Wall clock time and date at job start Tue Mar 31 2020 12:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00371 * 2 1 4 4 O 1.20824 * 119.99584 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00089 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47218 * 165.02899 * 5 3 2 7 7 H 1.08998 * 110.73149 * 48.83451 * 6 5 3 8 8 C 1.54939 * 110.67192 * 171.93562 * 6 5 3 9 9 C 1.54592 * 103.08611 * 155.93464 * 8 6 5 10 10 C 1.53994 * 105.13959 * 337.95219 * 9 8 6 11 11 N 1.47898 * 107.05645 * 358.77492 * 10 9 8 12 12 C 1.46903 * 110.99947 * 145.84807 * 11 10 9 13 13 C 1.50690 * 109.47379 * 59.63633 * 12 11 10 14 14 C 1.38309 * 119.92861 * 269.07499 * 13 12 11 15 15 C 1.38102 * 120.06494 * 179.72878 * 14 13 12 16 16 C 1.38875 * 119.93140 * 0.54110 * 15 14 13 17 17 O 1.35754 * 120.06563 * 179.75199 * 16 15 14 18 18 C 1.34828 * 116.99883 * 185.74021 * 17 16 15 19 19 H 1.08006 * 120.00097 * 354.73677 * 18 17 16 20 20 C 1.38654 * 120.00281 * 174.73202 * 18 17 16 21 21 N 1.31557 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47558 * 60.00225 * 22 20 18 24 24 H 1.48502 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47161 * 300.00063 * 22 20 18 26 26 C 1.38874 * 119.86728 * 359.72746 * 16 15 14 27 27 C 1.38105 * 119.92569 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46809 * 59.99981 * 1 2 3 29 29 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47082 * 300.00029 * 1 2 3 31 31 H 1.09000 * 109.47455 * 45.02883 * 5 3 2 32 32 H 1.09008 * 109.47306 * 285.02609 * 5 3 2 33 33 H 1.08998 * 110.72222 * 37.48275 * 8 6 5 34 34 H 1.08997 * 110.72158 * 274.38566 * 8 6 5 35 35 H 1.09003 * 110.30910 * 96.86874 * 9 8 6 36 36 H 1.08997 * 110.30801 * 218.93632 * 9 8 6 37 37 H 1.09004 * 109.91781 * 118.12714 * 10 9 8 38 38 H 1.08998 * 109.91786 * 239.22313 * 10 9 8 39 39 H 1.09004 * 109.47385 * 179.64016 * 12 11 10 40 40 H 1.09008 * 109.46849 * 299.63055 * 12 11 10 41 41 H 1.08002 * 119.96775 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.03108 * 180.27433 * 15 14 13 43 43 H 0.96996 * 120.00051 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.04291 * 179.97438 * 26 16 15 45 45 H 1.07999 * 119.96693 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0029 2.6929 -0.3722 7 1 3.4593 3.4314 0.2171 8 6 5.5317 2.8616 -0.1847 9 6 5.8755 4.0250 -1.1430 10 6 4.7314 4.0489 -2.1734 11 7 3.8146 2.9404 -1.8295 12 6 2.4211 3.2984 -2.1262 13 6 2.2843 3.6105 -3.5941 14 6 2.4513 4.9083 -4.0421 15 6 2.3321 5.1965 -5.3874 16 6 2.0330 4.1837 -6.2892 17 8 1.9101 4.4648 -7.6117 18 6 1.5026 3.4619 -8.4154 19 1 1.3722 2.4676 -8.0144 20 6 1.2508 3.7070 -9.7567 21 7 1.4101 4.9181 -10.2452 22 14 0.6855 2.3176 -10.8700 23 1 -0.5946 1.7643 -10.3601 24 1 0.4874 2.8364 -12.2473 25 1 1.7150 1.2476 -10.8879 26 6 1.8603 2.8825 -5.8356 27 6 1.9859 2.5998 -4.4896 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9675 0.5683 -0.7261 32 1 3.9428 1.0279 0.9934 33 1 6.0586 1.9531 -0.4763 34 1 5.7668 3.1282 0.8456 35 1 5.9120 4.9673 -0.5963 36 1 6.8285 3.8383 -1.6379 37 1 4.2014 4.9998 -2.1179 38 1 5.1322 3.9054 -3.1768 39 1 1.7689 2.4634 -1.8699 40 1 2.1382 4.1733 -1.5407 41 1 2.6792 5.6964 -3.3397 42 1 2.4670 6.2094 -5.7373 43 1 1.2343 5.0895 -11.1836 44 1 1.6272 2.0927 -6.5343 45 1 1.8514 1.5882 -4.1361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269665743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:33 Heat of formation + Delta-G solvation = -79.237624 kcal Electronic energy + Delta-G solvation = -26921.929185 eV Core-core repulsion = 23098.428891 eV Total energy + Delta-G solvation = -3823.500294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86088 -39.33565 -38.58932 -36.62369 -36.42304 -32.82833 -32.12254 -31.96070 -30.12989 -28.79303 -28.26595 -26.30198 -25.55264 -24.23565 -22.04997 -21.64198 -21.09196 -20.22325 -19.79288 -17.94385 -17.75553 -17.08443 -16.90631 -16.70178 -15.81777 -15.36694 -14.82085 -14.58028 -14.50188 -14.14634 -13.80888 -13.54561 -13.51153 -13.39919 -13.06612 -12.66096 -12.52080 -12.47041 -12.33373 -12.15563 -11.97631 -11.63686 -11.50707 -11.26705 -11.20587 -11.10335 -10.85304 -10.69678 -10.66788 -10.64368 -10.51549 -10.37026 -10.13767 -9.28416 -8.79421 -8.31003 -8.11103 -7.11305 -6.41540 -4.00305 2.06576 2.27497 2.35455 2.56797 3.15189 3.16185 3.18978 3.97109 3.99918 4.40079 4.52330 4.68375 4.76692 4.89495 4.92522 5.01060 5.03961 5.11139 5.13766 5.20551 5.31771 5.35194 5.42565 5.48138 5.55752 5.56874 5.70251 5.77295 5.82201 5.84831 6.02405 6.05915 6.07008 6.22665 6.26704 6.29185 6.49029 6.76551 6.91887 7.01699 7.10180 7.17790 7.31922 7.47760 7.50238 7.59917 7.88730 8.03813 9.04201 9.75202 10.76650 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003110 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.756319 B = 8999.937118 C =10188.279140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.459 3.541 4 O -0.500 6.500 5 C -0.099 4.099 6 C 0.066 3.934 7 H 0.067 0.933 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.041 3.959 11 N -0.507 5.507 12 C 0.103 3.897 13 C -0.179 4.179 14 C -0.068 4.068 15 C -0.193 4.193 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.234 4.234 27 C -0.051 4.051 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -7.869 22.037 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.303 3.697 4 O -0.388 6.388 5 C -0.137 4.137 6 C -0.042 4.042 7 H 0.085 0.915 8 C -0.153 4.153 9 C -0.169 4.169 10 C -0.087 4.087 11 N -0.232 5.232 12 C -0.023 4.023 13 C -0.180 4.180 14 C -0.087 4.087 15 C -0.212 4.212 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.254 4.254 27 C -0.070 4.070 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.641 -7.708 21.352 23.170 hybrid contribution -0.816 0.059 -0.202 0.843 sum 3.824 -7.649 21.150 22.814 Atomic orbital electron populations 1.23268 0.76314 1.03634 1.02682 1.86505 1.23494 1.33667 1.84137 1.23836 0.92421 0.81293 0.72182 1.90687 1.67419 1.36195 1.44465 1.21377 0.87337 1.00039 1.04990 1.22723 0.96151 0.94387 0.90975 0.91505 1.22474 0.94038 0.99483 0.99351 1.22406 0.99254 0.98247 0.97034 1.22793 0.93052 0.93121 0.99685 1.65013 1.06102 1.38747 1.13357 1.21208 0.88538 1.00019 0.92561 1.19188 1.10901 0.93692 0.94226 1.20505 0.98668 0.95326 0.94212 1.20160 1.10891 0.98170 0.91993 1.19374 0.92535 0.92615 0.85341 1.83976 1.73846 1.38467 1.12006 1.21276 1.46083 0.89425 0.89991 0.89172 1.25275 0.96857 0.97851 0.96513 1.70030 1.45320 1.19858 1.14754 0.85795 0.79327 0.79645 0.78747 1.19530 1.20297 1.19499 1.21144 1.11239 0.97040 0.95936 1.20530 0.96722 0.97349 0.92428 0.91587 0.88203 0.92049 0.86833 0.87202 0.90418 0.91092 0.91704 0.90923 0.93547 0.89968 0.90121 0.94588 0.87626 0.86692 0.92024 0.85679 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.85 10.56 -39.25 -0.41 -4.27 16 3 C 0.46 5.25 6.71 36.00 0.24 5.49 16 4 O -0.50 -7.01 12.55 -18.75 -0.24 -7.25 16 5 C -0.10 -0.88 5.53 -27.89 -0.15 -1.03 16 6 C 0.07 0.69 2.31 -65.52 -0.15 0.54 16 7 H 0.07 0.78 7.40 -51.93 -0.38 0.39 16 8 C -0.12 -0.95 6.48 -24.87 -0.16 -1.12 16 9 C -0.13 -1.25 6.93 -25.38 -0.18 -1.43 16 10 C 0.04 0.53 5.43 -2.76 -0.01 0.51 16 11 N -0.51 -6.83 5.04 -223.67 -1.13 -7.95 16 12 C 0.10 1.62 3.70 -4.98 -0.02 1.60 16 13 C -0.18 -3.28 4.88 -104.58 -0.51 -3.79 16 14 C -0.07 -1.28 8.57 -39.61 -0.34 -1.62 16 15 C -0.19 -4.22 9.99 -39.40 -0.39 -4.62 16 16 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 18 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 20 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.62 6.34 -51.93 -0.33 0.29 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.31 4.83 -51.93 -0.25 1.06 16 40 H 0.04 0.58 7.94 -51.92 -0.41 0.17 16 41 H 0.11 1.72 7.18 -52.49 -0.38 1.34 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -32.81 364.34 -8.50 -41.31 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.53 Total: 4.51 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -1.42 Total: -17.42 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: -0.37 Total: -32.93 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.65 Total: -16.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.81 -8.50 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269665743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.933 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds