Wall clock time and date at job start Tue Mar 31 2020 12:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00371 * 2 1 4 4 O 1.20824 * 119.99584 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00089 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47218 * 165.02899 * 5 3 2 7 7 H 1.08998 * 110.73149 * 48.83451 * 6 5 3 8 8 C 1.54939 * 110.67192 * 171.93562 * 6 5 3 9 9 C 1.54592 * 103.08611 * 155.93464 * 8 6 5 10 10 C 1.53994 * 105.13959 * 337.95219 * 9 8 6 11 11 N 1.47898 * 107.05645 * 358.77492 * 10 9 8 12 12 C 1.46903 * 110.99947 * 145.84807 * 11 10 9 13 13 C 1.50690 * 109.47379 * 59.63633 * 12 11 10 14 14 C 1.38309 * 119.92861 * 269.07499 * 13 12 11 15 15 C 1.38102 * 120.06494 * 179.72878 * 14 13 12 16 16 C 1.38875 * 119.93140 * 0.54110 * 15 14 13 17 17 O 1.35754 * 120.06563 * 179.75199 * 16 15 14 18 18 C 1.34828 * 116.99883 * 185.74021 * 17 16 15 19 19 H 1.08006 * 120.00097 * 354.73677 * 18 17 16 20 20 C 1.38654 * 120.00281 * 174.73202 * 18 17 16 21 21 N 1.31557 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47558 * 60.00225 * 22 20 18 24 24 H 1.48502 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47161 * 300.00063 * 22 20 18 26 26 C 1.38874 * 119.86728 * 359.72746 * 16 15 14 27 27 C 1.38105 * 119.92569 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46809 * 59.99981 * 1 2 3 29 29 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47082 * 300.00029 * 1 2 3 31 31 H 1.09000 * 109.47455 * 45.02883 * 5 3 2 32 32 H 1.09008 * 109.47306 * 285.02609 * 5 3 2 33 33 H 1.08998 * 110.72222 * 37.48275 * 8 6 5 34 34 H 1.08997 * 110.72158 * 274.38566 * 8 6 5 35 35 H 1.09003 * 110.30910 * 96.86874 * 9 8 6 36 36 H 1.08997 * 110.30801 * 218.93632 * 9 8 6 37 37 H 1.09004 * 109.91781 * 118.12714 * 10 9 8 38 38 H 1.08998 * 109.91786 * 239.22313 * 10 9 8 39 39 H 1.09004 * 109.47385 * 179.64016 * 12 11 10 40 40 H 1.09008 * 109.46849 * 299.63055 * 12 11 10 41 41 H 1.08002 * 119.96775 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.03108 * 180.27433 * 15 14 13 43 43 H 0.96996 * 120.00051 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.04291 * 179.97438 * 26 16 15 45 45 H 1.07999 * 119.96693 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0029 2.6929 -0.3722 7 1 3.4593 3.4314 0.2171 8 6 5.5317 2.8616 -0.1847 9 6 5.8755 4.0250 -1.1430 10 6 4.7314 4.0489 -2.1734 11 7 3.8146 2.9404 -1.8295 12 6 2.4211 3.2984 -2.1262 13 6 2.2843 3.6105 -3.5941 14 6 2.4513 4.9083 -4.0421 15 6 2.3321 5.1965 -5.3874 16 6 2.0330 4.1837 -6.2892 17 8 1.9101 4.4648 -7.6117 18 6 1.5026 3.4619 -8.4154 19 1 1.3722 2.4676 -8.0144 20 6 1.2508 3.7070 -9.7567 21 7 1.4101 4.9181 -10.2452 22 14 0.6855 2.3176 -10.8700 23 1 -0.5946 1.7643 -10.3601 24 1 0.4874 2.8364 -12.2473 25 1 1.7150 1.2476 -10.8879 26 6 1.8603 2.8825 -5.8356 27 6 1.9859 2.5998 -4.4896 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9675 0.5683 -0.7261 32 1 3.9428 1.0279 0.9934 33 1 6.0586 1.9531 -0.4763 34 1 5.7668 3.1282 0.8456 35 1 5.9120 4.9673 -0.5963 36 1 6.8285 3.8383 -1.6379 37 1 4.2014 4.9998 -2.1179 38 1 5.1322 3.9054 -3.1768 39 1 1.7689 2.4634 -1.8699 40 1 2.1382 4.1733 -1.5407 41 1 2.6792 5.6964 -3.3397 42 1 2.4670 6.2094 -5.7373 43 1 1.2343 5.0895 -11.1836 44 1 1.6272 2.0927 -6.5343 45 1 1.8514 1.5882 -4.1361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269665743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:33 Heat of formation + Delta-G solvation = -100.033284 kcal Electronic energy + Delta-G solvation = -26922.830953 eV Core-core repulsion = 23098.428891 eV Total energy + Delta-G solvation = -3824.402062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75071 -40.86799 -39.86121 -38.19489 -37.43087 -34.48389 -33.64239 -32.85840 -31.84208 -30.24583 -29.02141 -27.58186 -27.01144 -25.66787 -23.71648 -22.68992 -22.26598 -21.34447 -20.79508 -19.86901 -18.84943 -18.58744 -17.91950 -17.56625 -16.80896 -16.50889 -16.38763 -16.10183 -16.07000 -15.50802 -15.18901 -15.10411 -14.70528 -14.51435 -14.39979 -14.15572 -13.74356 -13.54855 -13.42149 -13.27663 -13.20318 -12.87030 -12.81077 -12.50537 -12.38903 -12.23829 -12.17228 -12.05394 -11.97518 -11.90224 -11.57540 -11.36445 -11.29532 -11.17733 -10.79298 -9.81623 -9.41027 -8.92005 -8.48063 -6.16611 0.55433 0.64044 1.22685 1.34120 1.45001 1.50667 1.84355 2.17313 2.72762 3.02491 3.24270 3.47917 3.64302 3.71977 3.95272 3.99551 4.08123 4.12251 4.16153 4.25550 4.31129 4.33107 4.38655 4.43049 4.54624 4.56411 4.70411 4.72329 4.75658 4.76716 4.82244 4.99240 5.05921 5.08485 5.09112 5.13417 5.24911 5.27687 5.38398 5.47192 5.52791 5.67759 5.77376 6.00812 6.02587 6.06898 6.18648 6.76784 6.96273 7.76336 8.75014 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003110 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.756319 B = 8999.937118 C =10188.279140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.455 3.545 4 O -0.533 6.533 5 C -0.096 4.096 6 C 0.066 3.934 7 H 0.057 0.943 8 C -0.106 4.106 9 C -0.127 4.127 10 C 0.035 3.965 11 N -0.516 5.516 12 C 0.114 3.886 13 C -0.157 4.157 14 C -0.060 4.060 15 C -0.201 4.201 16 C 0.116 3.884 17 O -0.231 6.231 18 C -0.416 4.416 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.239 4.239 27 C -0.052 4.052 28 H 0.052 0.948 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 -10.079 24.986 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.423 6.423 5 C -0.133 4.133 6 C -0.042 4.042 7 H 0.075 0.925 8 C -0.144 4.144 9 C -0.166 4.166 10 C -0.092 4.092 11 N -0.241 5.241 12 C -0.013 4.013 13 C -0.158 4.158 14 C -0.078 4.078 15 C -0.220 4.220 16 C 0.066 3.934 17 O -0.138 6.138 18 C -0.492 4.492 19 H 0.118 0.882 20 C -0.219 4.219 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.181 1.181 26 C -0.259 4.259 27 C -0.071 4.071 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.154 0.846 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.552 -9.943 24.368 26.898 hybrid contribution -1.049 0.752 -0.758 1.497 sum 4.503 -9.191 23.611 25.733 Atomic orbital electron populations 1.23464 0.75398 1.05386 1.02174 1.86508 1.24502 1.33370 1.83778 1.24410 0.93445 0.80977 0.71096 1.90673 1.68294 1.37171 1.46182 1.21504 0.85520 0.99030 1.07271 1.22830 0.97833 0.95151 0.88430 0.92469 1.22495 0.92002 0.99355 1.00504 1.22396 0.98023 0.99631 0.96504 1.22807 0.94161 0.92515 0.99765 1.64962 1.04355 1.38682 1.16085 1.21063 0.90406 0.99907 0.89928 1.19654 1.07170 0.93087 0.95903 1.20810 0.97201 0.96573 0.93256 1.20391 1.10831 0.97777 0.92994 1.19871 0.94403 0.94423 0.84713 1.83941 1.76488 1.39493 1.13847 1.21791 1.46672 0.89999 0.90767 0.88212 1.26600 0.96568 1.00927 0.97823 1.70178 1.47757 1.22592 1.15368 0.84655 0.79342 0.76008 0.76259 1.18200 1.19474 1.18058 1.21222 1.11341 0.96048 0.97250 1.20792 0.96022 0.99011 0.91228 0.92945 0.85404 0.91736 0.86160 0.83489 0.89306 0.88448 0.90568 0.90218 0.94312 0.92287 0.90183 0.94862 0.84564 0.86793 0.91782 0.86235 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.37 -6.93 10.56 -51.40 -0.54 -7.48 16 3 C 0.46 9.30 6.71 71.23 0.48 9.78 16 4 O -0.53 -14.07 12.55 21.97 0.28 -13.79 16 5 C -0.10 -1.34 5.53 29.85 0.17 -1.18 16 6 C 0.07 1.15 2.31 45.17 0.10 1.26 16 7 H 0.06 1.16 7.40 -2.39 -0.02 1.14 16 8 C -0.11 -1.29 6.48 31.80 0.21 -1.09 16 9 C -0.13 -2.03 6.93 31.47 0.22 -1.82 16 10 C 0.04 0.84 5.43 86.45 0.47 1.31 16 11 N -0.52 -12.67 5.04 -861.55 -4.35 -17.02 16 12 C 0.11 3.37 3.70 85.55 0.32 3.69 16 13 C -0.16 -5.58 4.88 -19.84 -0.10 -5.67 16 14 C -0.06 -2.22 8.57 22.25 0.19 -2.02 16 15 C -0.20 -9.05 9.99 22.39 0.22 -8.83 16 16 C 0.12 6.07 6.65 22.57 0.15 6.22 16 17 O -0.23 -14.35 9.76 -22.77 -0.22 -14.57 16 18 C -0.42 -24.90 9.49 67.92 0.64 -24.25 16 19 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 20 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 21 N -0.92 -57.49 13.67 21.61 0.30 -57.20 16 22 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 26 C -0.24 -11.07 9.17 22.39 0.21 -10.87 16 27 C -0.05 -2.00 9.69 22.25 0.22 -1.78 16 28 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 31 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.15 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 0.97 6.34 -2.38 -0.02 0.95 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.44 4.83 -2.38 -0.01 2.43 16 40 H 0.03 1.01 7.94 -2.38 -0.02 0.99 16 41 H 0.14 4.20 7.18 -2.91 -0.02 4.18 16 42 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 45 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -76.16 364.34 3.63 -72.53 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.99 Total: 26.34 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 5.15 Total: -34.41 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -4.05 Total: -74.21 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.49 Total: -35.84 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -76.16 3.63 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269665743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.506 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds