Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99945 * 2 1 4 4 C 1.52998 * 109.47201 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47274 * 64.99899 * 4 3 2 6 6 C 1.42900 * 114.00071 * 180.02562 * 5 4 3 7 7 H 1.08992 * 110.88527 * 32.42913 * 6 5 4 8 8 C 1.55160 * 111.03872 * 156.33141 * 6 5 4 9 9 C 1.54320 * 102.94416 * 153.58767 * 8 6 5 10 10 N 1.47021 * 107.26861 * 337.81029 * 9 8 6 11 11 C 1.34781 * 125.64650 * 178.97364 * 10 9 8 12 12 O 1.21585 * 120.00139 * 174.77738 * 11 10 9 13 13 C 1.47644 * 119.99865 * 354.77963 * 11 10 9 14 14 C 1.40013 * 119.89824 * 8.00091 * 13 11 10 15 15 C 1.36317 * 120.10974 * 179.71754 * 14 13 11 16 16 C 1.40888 * 119.88856 * 0.57989 * 15 14 13 17 17 C 1.41105 * 120.10275 * 179.67653 * 16 15 14 18 18 H 1.08000 * 120.00205 * 214.82281 * 17 16 15 19 19 C 1.40224 * 120.00086 * 34.81943 * 17 16 15 20 20 N 1.30639 * 120.00080 * 355.51723 * 19 17 16 21 21 Si 1.86808 * 119.99881 * 175.51396 * 19 17 16 22 22 H 1.48494 * 109.47160 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47003 * 120.00238 * 21 19 17 24 24 H 1.48494 * 109.46916 * 239.99938 * 21 19 17 25 25 C 1.40892 * 119.79335 * 359.69379 * 16 15 14 26 26 C 1.36312 * 119.89123 * 0.02562 * 25 16 15 27 27 C 1.47415 * 108.70672 * 358.93879 * 10 9 8 28 28 H 1.09000 * 109.46852 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.46969 * 60.00074 * 1 2 3 30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46833 * 59.99981 * 3 2 1 32 32 H 1.09002 * 109.46779 * 300.00258 * 3 2 1 33 33 H 1.09001 * 109.47006 * 304.99998 * 4 3 2 34 34 H 1.08999 * 109.47371 * 185.00103 * 4 3 2 35 35 H 1.09004 * 110.71943 * 271.95791 * 8 6 5 36 36 H 1.09005 * 110.72035 * 35.04789 * 8 6 5 37 37 H 1.09000 * 109.87780 * 97.22264 * 9 8 6 38 38 H 1.08999 * 109.88358 * 218.23670 * 9 8 6 39 39 H 1.08005 * 119.94458 * 0.02562 * 14 13 11 40 40 H 1.07994 * 120.05409 * 180.29878 * 15 14 13 41 41 H 0.97003 * 120.00138 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.04946 * 179.97438 * 25 16 15 43 43 H 1.07997 * 119.94517 * 179.97438 * 26 25 16 44 44 H 1.09006 * 110.36941 * 265.29135 * 27 10 9 45 45 H 1.08998 * 110.37166 * 142.97007 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3245 7 1 5.8235 0.2376 -0.3451 8 6 5.7425 -0.7170 -2.3174 9 6 7.1465 -0.3102 -2.8122 10 7 7.2852 1.1366 -2.5902 11 6 8.3779 1.8734 -2.8728 12 8 8.3488 3.0811 -2.7358 13 6 9.6101 1.2138 -3.3488 14 6 9.5939 -0.1497 -3.6662 15 6 10.7276 -0.7617 -4.1115 16 6 11.9201 -0.0225 -4.2406 17 6 13.0979 -0.6530 -4.6946 18 1 14.0578 -0.3507 -4.3026 19 6 13.0222 -1.6722 -5.6548 20 7 11.8573 -2.0984 -6.0645 21 14 14.5872 -2.4203 -6.3482 22 1 15.7663 -1.7677 -5.7245 23 1 14.6134 -3.8754 -6.0527 24 1 14.6259 -2.2130 -7.8181 25 6 11.9328 1.3481 -3.9145 26 6 10.7927 1.9526 -3.4755 27 6 6.0311 1.6480 -2.0082 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9786 2.1766 0.0889 35 1 5.7774 -1.6791 -1.8063 36 1 5.0329 -0.7467 -3.1443 37 1 7.9085 -0.8467 -2.2469 38 1 7.2451 -0.5358 -3.8740 39 1 8.6803 -0.7165 -3.5627 40 1 10.7129 -1.8124 -4.3607 41 1 11.8049 -2.8031 -6.7290 42 1 12.8447 1.9185 -4.0115 43 1 10.8016 3.0030 -3.2249 44 1 5.3794 2.0351 -2.7915 45 1 6.2430 2.4236 -1.2722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275520607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -82.208711 kcal Electronic energy + Delta-G solvation = -26069.498809 eV Core-core repulsion = 22245.869679 eV Total energy + Delta-G solvation = -3823.629130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96996 -38.66949 -37.80613 -36.99376 -36.03455 -33.78464 -31.54970 -30.36008 -29.97029 -29.47288 -28.16745 -26.58573 -25.80524 -23.75164 -22.78560 -21.69901 -21.08688 -20.58210 -19.13290 -17.51017 -17.45479 -16.91650 -16.65040 -16.02424 -15.61337 -15.49380 -15.19828 -14.88375 -14.75879 -14.11361 -13.98872 -13.60814 -13.29457 -13.03422 -12.91249 -12.82528 -12.56713 -12.42191 -12.21969 -11.82805 -11.80589 -11.66733 -11.55138 -11.25347 -11.22731 -11.05538 -10.78077 -10.68402 -10.54287 -10.01606 -9.95864 -9.76844 -9.46046 -9.29787 -8.96367 -8.27712 -7.69250 -7.39086 -6.85022 -4.60890 2.20553 2.93860 2.99231 3.02671 3.04849 3.13997 3.44211 3.70781 3.79097 3.87464 4.45230 4.58935 4.65462 4.70801 4.84290 4.91545 5.00206 5.01376 5.07365 5.18494 5.26221 5.35275 5.40984 5.43757 5.53430 5.60564 5.75826 5.84944 5.88421 5.98629 6.08189 6.17640 6.31772 6.64293 6.79588 6.80270 6.90771 7.04383 7.07345 7.17819 7.50537 7.63394 7.82937 7.91181 8.09651 8.13773 8.46920 8.69600 8.78855 8.96334 10.03703 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026221 B = 0.002310 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.610387 B =12116.732086 C =13017.327312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.364 6.364 6 C 0.075 3.925 7 H 0.078 0.922 8 C -0.130 4.130 9 C 0.101 3.899 10 N -0.623 5.623 11 C 0.587 3.413 12 O -0.571 6.571 13 C -0.266 4.266 14 C -0.107 4.107 15 C -0.167 4.167 16 C 0.124 3.876 17 C -0.450 4.450 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.793 5.793 21 Si 0.919 3.081 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.227 4.227 26 C -0.032 4.032 27 C 0.090 3.910 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.282 0.718 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 -0.557 9.029 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.282 6.282 6 C 0.016 3.984 7 H 0.096 0.904 8 C -0.167 4.167 9 C -0.022 4.022 10 N -0.359 5.359 11 C 0.385 3.615 12 O -0.452 6.452 13 C -0.270 4.270 14 C -0.125 4.125 15 C -0.186 4.186 16 C 0.121 3.879 17 C -0.479 4.479 18 H 0.100 0.900 19 C -0.148 4.148 20 N -0.418 5.418 21 Si 0.743 3.257 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.246 4.246 26 C -0.051 4.051 27 C -0.034 4.034 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.592 -0.272 8.772 18.770 hybrid contribution 0.557 0.010 -0.299 0.632 sum -16.035 -0.262 8.473 18.138 Atomic orbital electron populations 1.22744 0.81136 1.02847 0.99839 1.87969 1.19534 1.27360 1.95372 1.22575 0.92411 0.85460 1.00930 1.22589 0.93258 0.97941 0.87824 1.87975 1.20907 1.81415 1.37885 1.23262 0.81118 0.95105 0.98893 0.90377 1.22821 0.96534 0.97995 0.99393 1.22509 0.95890 0.82193 1.01592 1.48130 1.13852 1.08662 1.65249 1.18417 0.81847 0.85653 0.75631 1.90645 1.84057 1.14348 1.56195 1.18910 0.92767 0.95264 1.20109 1.21909 0.99363 0.93618 0.97586 1.21316 0.92810 1.00850 1.03665 1.17911 0.93546 0.90414 0.86062 1.19787 0.94532 1.14517 1.19068 0.90030 1.26037 0.97922 0.94887 0.95988 1.69680 1.25264 1.22616 1.24253 0.86072 0.81397 0.79040 0.79146 1.18330 1.19698 1.19717 1.20850 0.97189 0.95099 1.11499 1.20378 0.91891 0.97712 0.95156 1.22499 0.86350 0.96634 0.97936 0.94244 0.94008 0.89584 0.91821 0.92279 0.92227 0.91504 0.89469 0.89540 0.89890 0.89883 0.85561 0.85118 0.90653 0.88294 0.88155 0.91248 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.97 10.67 -40.08 -0.43 -4.40 16 3 C 0.06 0.53 6.32 37.16 0.23 0.76 16 4 C 0.06 0.56 6.20 37.16 0.23 0.79 16 5 O -0.36 -4.39 10.12 -40.08 -0.41 -4.80 16 6 C 0.07 0.90 3.49 -24.58 -0.09 0.82 16 7 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 8 C -0.13 -1.51 6.69 -24.90 -0.17 -1.67 16 9 C 0.10 1.46 4.87 -3.07 -0.01 1.44 16 10 N -0.62 -10.97 3.33 -176.95 -0.59 -11.56 16 11 C 0.59 12.90 7.80 -12.42 -0.10 12.80 16 12 O -0.57 -13.97 16.65 5.29 0.09 -13.88 16 13 C -0.27 -6.16 5.89 -104.73 -0.62 -6.78 16 14 C -0.11 -2.36 8.52 -39.61 -0.34 -2.70 16 15 C -0.17 -4.09 8.61 -39.27 -0.34 -4.43 16 16 C 0.12 3.18 5.55 -106.80 -0.59 2.58 16 17 C -0.45 -11.34 9.03 -37.75 -0.34 -11.68 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.66 5.42 -17.31 -0.09 1.56 16 20 N -0.79 -19.28 10.59 55.56 0.59 -18.70 16 21 Si 0.92 17.80 29.56 -169.99 -5.03 12.78 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.23 -5.53 9.73 -39.27 -0.38 -5.91 16 26 C -0.03 -0.77 9.52 -39.61 -0.38 -1.14 16 27 C 0.09 1.32 6.62 -2.54 -0.02 1.30 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.20 6.67 -51.93 -0.35 0.85 16 38 H 0.08 1.23 6.78 -51.93 -0.35 0.88 16 39 H 0.13 2.35 2.72 -59.25 -0.16 2.19 16 40 H 0.13 3.26 6.13 -52.49 -0.32 2.94 16 41 H 0.28 6.21 8.29 -40.82 -0.34 5.88 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.10 2.31 7.65 -52.49 -0.40 1.91 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -30.67 369.04 -8.70 -39.37 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.61 Total: 6.55 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -1.88 Total: -10.93 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.00 Total: -30.26 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.75 Total: -23.08 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.67 -8.70 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275520607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.834 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds