Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99945 * 2 1 4 4 C 1.52998 * 109.47201 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47274 * 64.99899 * 4 3 2 6 6 C 1.42900 * 114.00071 * 180.02562 * 5 4 3 7 7 H 1.08992 * 110.88527 * 32.42913 * 6 5 4 8 8 C 1.55160 * 111.03872 * 156.33141 * 6 5 4 9 9 C 1.54320 * 102.94416 * 153.58767 * 8 6 5 10 10 N 1.47021 * 107.26861 * 337.81029 * 9 8 6 11 11 C 1.34781 * 125.64650 * 178.97364 * 10 9 8 12 12 O 1.21585 * 120.00139 * 174.77738 * 11 10 9 13 13 C 1.47644 * 119.99865 * 354.77963 * 11 10 9 14 14 C 1.40013 * 119.89824 * 8.00091 * 13 11 10 15 15 C 1.36317 * 120.10974 * 179.71754 * 14 13 11 16 16 C 1.40888 * 119.88856 * 0.57989 * 15 14 13 17 17 C 1.41105 * 120.10275 * 179.67653 * 16 15 14 18 18 H 1.08000 * 120.00205 * 214.82281 * 17 16 15 19 19 C 1.40224 * 120.00086 * 34.81943 * 17 16 15 20 20 N 1.30639 * 120.00080 * 355.51723 * 19 17 16 21 21 Si 1.86808 * 119.99881 * 175.51396 * 19 17 16 22 22 H 1.48494 * 109.47160 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47003 * 120.00238 * 21 19 17 24 24 H 1.48494 * 109.46916 * 239.99938 * 21 19 17 25 25 C 1.40892 * 119.79335 * 359.69379 * 16 15 14 26 26 C 1.36312 * 119.89123 * 0.02562 * 25 16 15 27 27 C 1.47415 * 108.70672 * 358.93879 * 10 9 8 28 28 H 1.09000 * 109.46852 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.46969 * 60.00074 * 1 2 3 30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46833 * 59.99981 * 3 2 1 32 32 H 1.09002 * 109.46779 * 300.00258 * 3 2 1 33 33 H 1.09001 * 109.47006 * 304.99998 * 4 3 2 34 34 H 1.08999 * 109.47371 * 185.00103 * 4 3 2 35 35 H 1.09004 * 110.71943 * 271.95791 * 8 6 5 36 36 H 1.09005 * 110.72035 * 35.04789 * 8 6 5 37 37 H 1.09000 * 109.87780 * 97.22264 * 9 8 6 38 38 H 1.08999 * 109.88358 * 218.23670 * 9 8 6 39 39 H 1.08005 * 119.94458 * 0.02562 * 14 13 11 40 40 H 1.07994 * 120.05409 * 180.29878 * 15 14 13 41 41 H 0.97003 * 120.00138 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.04946 * 179.97438 * 25 16 15 43 43 H 1.07997 * 119.94517 * 179.97438 * 26 25 16 44 44 H 1.09006 * 110.36941 * 265.29135 * 27 10 9 45 45 H 1.08998 * 110.37166 * 142.97007 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3245 7 1 5.8235 0.2376 -0.3451 8 6 5.7425 -0.7170 -2.3174 9 6 7.1465 -0.3102 -2.8122 10 7 7.2852 1.1366 -2.5902 11 6 8.3779 1.8734 -2.8728 12 8 8.3488 3.0811 -2.7358 13 6 9.6101 1.2138 -3.3488 14 6 9.5939 -0.1497 -3.6662 15 6 10.7276 -0.7617 -4.1115 16 6 11.9201 -0.0225 -4.2406 17 6 13.0979 -0.6530 -4.6946 18 1 14.0578 -0.3507 -4.3026 19 6 13.0222 -1.6722 -5.6548 20 7 11.8573 -2.0984 -6.0645 21 14 14.5872 -2.4203 -6.3482 22 1 15.7663 -1.7677 -5.7245 23 1 14.6134 -3.8754 -6.0527 24 1 14.6259 -2.2130 -7.8181 25 6 11.9328 1.3481 -3.9145 26 6 10.7927 1.9526 -3.4755 27 6 6.0311 1.6480 -2.0082 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 0.8409 34 1 3.9786 2.1766 0.0889 35 1 5.7774 -1.6791 -1.8063 36 1 5.0329 -0.7467 -3.1443 37 1 7.9085 -0.8467 -2.2469 38 1 7.2451 -0.5358 -3.8740 39 1 8.6803 -0.7165 -3.5627 40 1 10.7129 -1.8124 -4.3607 41 1 11.8049 -2.8031 -6.7290 42 1 12.8447 1.9185 -4.0115 43 1 10.8016 3.0030 -3.2249 44 1 5.3794 2.0351 -2.7915 45 1 6.2430 2.4236 -1.2722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275520607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -100.643618 kcal Electronic energy + Delta-G solvation = -26070.298207 eV Core-core repulsion = 22245.869679 eV Total energy + Delta-G solvation = -3824.428528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39157 -39.75160 -38.94620 -38.50049 -37.25520 -35.59857 -32.87033 -31.81698 -31.38353 -30.84279 -29.48009 -27.58927 -27.10233 -25.14392 -23.52942 -23.22914 -22.66354 -21.97560 -20.72153 -19.29185 -18.41441 -18.18954 -17.56966 -17.30551 -16.89810 -16.63716 -16.38666 -16.04892 -15.91924 -15.60509 -15.06831 -14.89325 -14.79514 -14.61220 -14.20760 -14.18069 -14.02242 -13.58774 -13.45836 -13.29724 -13.16678 -12.83989 -12.72861 -12.56668 -12.38635 -12.37913 -12.21915 -11.95640 -11.72254 -11.66705 -11.21397 -11.07251 -10.80077 -10.61867 -10.55509 -9.75574 -9.55448 -9.25509 -8.63834 -6.51110 0.39499 1.13246 1.40874 1.42018 1.55710 1.90918 2.08742 2.20241 2.67803 2.79902 2.87877 3.40292 3.56123 3.64137 3.95230 4.05504 4.10560 4.14801 4.21889 4.27357 4.42478 4.44293 4.45619 4.53005 4.56813 4.60423 4.63453 4.67798 4.73503 4.82137 4.89153 4.95229 4.97711 5.07032 5.09370 5.15124 5.30549 5.36555 5.64036 5.80756 5.97001 6.03320 6.14871 6.25584 6.28237 6.50654 6.59067 6.82147 6.90772 7.27056 8.27565 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026221 B = 0.002310 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.610387 B =12116.732086 C =13017.327312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.061 3.939 4 C 0.052 3.948 5 O -0.376 6.376 6 C 0.087 3.913 7 H 0.092 0.908 8 C -0.118 4.118 9 C 0.092 3.908 10 N -0.619 5.619 11 C 0.583 3.417 12 O -0.604 6.604 13 C -0.276 4.276 14 C -0.097 4.097 15 C -0.185 4.185 16 C 0.095 3.905 17 C -0.480 4.480 18 H 0.081 0.919 19 C 0.031 3.969 20 N -0.817 5.817 21 Si 0.992 3.008 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.268 1.268 25 C -0.239 4.239 26 C -0.044 4.044 27 C 0.085 3.915 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.163 0.837 40 H 0.124 0.876 41 H 0.292 0.708 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 -1.884 9.533 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.295 6.295 6 C 0.028 3.972 7 H 0.110 0.890 8 C -0.155 4.155 9 C -0.030 4.030 10 N -0.352 5.352 11 C 0.379 3.621 12 O -0.489 6.489 13 C -0.280 4.280 14 C -0.115 4.115 15 C -0.205 4.205 16 C 0.092 3.908 17 C -0.509 4.509 18 H 0.099 0.901 19 C -0.185 4.185 20 N -0.443 5.443 21 Si 0.813 3.187 22 H -0.182 1.182 23 H -0.185 1.185 24 H -0.192 1.192 25 C -0.258 4.258 26 C -0.063 4.063 27 C -0.038 4.038 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.180 0.820 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.888 -1.620 9.297 20.225 hybrid contribution 0.784 0.465 -0.410 1.000 sum -17.104 -1.155 8.887 19.309 Atomic orbital electron populations 1.22903 0.79655 1.03679 1.00800 1.87915 1.21313 1.28482 1.95603 1.22683 0.91702 0.85104 1.02052 1.22833 0.94090 0.98528 0.86945 1.87967 1.20409 1.81661 1.39428 1.23138 0.81376 0.93416 0.99281 0.88969 1.22778 0.94238 0.98920 0.99599 1.22664 0.98275 0.80253 1.01805 1.48081 1.13514 1.09971 1.63668 1.18225 0.82648 0.85361 0.75835 1.90616 1.84842 1.15651 1.57780 1.19203 0.93305 0.95782 1.19725 1.22289 1.00083 0.93392 0.95706 1.21345 0.93462 1.00651 1.05000 1.18277 0.94559 0.91106 0.86849 1.20022 0.94427 1.16037 1.20431 0.90085 1.26889 1.01270 0.94685 0.95608 1.69714 1.27091 1.22932 1.24546 0.84990 0.77055 0.78442 0.78243 1.18246 1.18488 1.19238 1.20978 0.97773 0.95080 1.12016 1.20530 0.92341 0.98018 0.95403 1.22693 0.85069 0.98094 0.97899 0.92687 0.93617 0.88930 0.89357 0.92452 0.91587 0.90312 0.86846 0.89154 0.89415 0.90003 0.82044 0.85781 0.89691 0.87628 0.87957 0.91508 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.80 10.67 -144.34 -1.54 -9.34 16 3 C 0.06 0.89 6.32 71.98 0.45 1.35 16 4 C 0.05 0.86 6.20 71.98 0.45 1.30 16 5 O -0.38 -8.22 10.12 -144.34 -1.46 -9.68 16 6 C 0.09 1.87 3.49 31.99 0.11 1.99 16 7 H 0.09 1.77 7.90 -2.39 -0.02 1.75 16 8 C -0.12 -2.39 6.69 31.78 0.21 -2.18 16 9 C 0.09 2.47 4.87 86.73 0.42 2.89 16 10 N -0.62 -21.13 3.33 -832.01 -2.77 -23.90 16 11 C 0.58 25.63 7.80 86.73 0.68 26.31 16 12 O -0.60 -29.94 16.65 -3.98 -0.07 -30.01 16 13 C -0.28 -12.88 5.89 -19.93 -0.12 -13.00 16 14 C -0.10 -4.28 8.52 22.25 0.19 -4.09 16 15 C -0.19 -9.21 8.61 22.47 0.19 -9.01 16 16 C 0.10 5.01 5.55 -21.28 -0.12 4.89 16 17 C -0.48 -24.69 9.03 23.46 0.21 -24.48 16 18 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 19 C 0.03 1.48 5.42 85.35 0.46 1.94 16 20 N -0.82 -39.77 10.59 21.87 0.23 -39.54 16 21 Si 0.99 36.02 29.56 68.60 2.03 38.05 16 22 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 25 C -0.24 -12.02 9.73 22.47 0.22 -11.80 16 26 C -0.04 -2.14 9.52 22.25 0.21 -1.92 16 27 C 0.09 2.41 6.62 86.86 0.58 2.98 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.09 2.33 6.67 -2.39 -0.02 2.32 16 38 H 0.08 2.27 6.78 -2.39 -0.02 2.25 16 39 H 0.16 5.82 2.72 -9.26 -0.03 5.79 16 40 H 0.12 6.28 6.13 -2.91 -0.02 6.26 16 41 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 43 H 0.10 4.86 7.65 -2.91 -0.02 4.84 16 44 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 Total: -1.00 -67.01 369.04 2.80 -64.21 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.98 Total: 31.50 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 5.40 Total: -21.29 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -2.54 Total: -63.44 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -3.07 Total: -49.03 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -67.01 2.80 -64.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275520607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.436 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds