Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99667 * 2 1 4 4 C 1.52992 * 109.47082 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47585 * 64.99748 * 4 3 2 6 6 C 1.35907 * 117.00236 * 180.02562 * 5 4 3 7 7 C 1.38898 * 119.97190 * 0.25690 * 6 5 4 8 8 C 1.38290 * 120.28940 * 180.30075 * 7 6 5 9 9 C 1.37940 * 120.23101 * 359.71840 * 8 7 6 10 10 C 1.39832 * 119.93938 * 0.02562 * 9 8 7 11 11 C 1.47209 * 120.14444 * 179.97438 * 10 9 8 12 12 C 1.34814 * 120.00061 * 0.02562 * 11 10 9 13 13 C 1.46435 * 119.99844 * 179.97438 * 12 11 10 14 14 O 1.21692 * 119.99783 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99696 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00148 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47456 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47341 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99782 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00058 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99923 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47491 * 89.99457 * 22 20 18 24 24 H 1.48502 * 109.46802 * 209.99867 * 22 20 18 25 25 H 1.48499 * 109.46703 * 329.99324 * 22 20 18 26 26 C 1.38381 * 119.96963 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 300.00041 * 1 2 3 29 29 H 1.09001 * 109.47618 * 59.99803 * 1 2 3 30 30 H 1.08999 * 109.47544 * 59.99983 * 3 2 1 31 31 H 1.09006 * 109.47233 * 300.00126 * 3 2 1 32 32 H 1.09004 * 109.46845 * 304.99959 * 4 3 2 33 33 H 1.09007 * 109.47620 * 184.99865 * 4 3 2 34 34 H 1.08001 * 119.85674 * 359.97438 * 7 6 5 35 35 H 1.08002 * 119.88519 * 179.70089 * 8 7 6 36 36 H 1.08006 * 120.03093 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.00436 * 180.02562 * 11 10 9 38 38 H 1.08000 * 119.99502 * 359.97438 * 12 11 10 39 39 H 0.97008 * 120.00268 * 0.02562 * 15 13 12 40 40 H 1.08995 * 109.47653 * 300.00403 * 16 15 13 41 41 H 1.09002 * 109.46887 * 60.00319 * 16 15 13 42 42 H 1.09003 * 109.47342 * 300.00217 * 17 16 15 43 43 H 1.09001 * 109.47196 * 60.00623 * 17 16 15 44 44 H 0.97011 * 119.99864 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.11922 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3019 0.3979 -1.3836 7 6 6.1816 0.7900 -0.3827 8 6 7.5438 0.6138 -0.5430 9 6 8.0392 0.0417 -1.6962 10 6 7.1620 -0.3614 -2.7078 11 6 7.6858 -0.9719 -3.9407 12 6 9.0138 -1.1439 -4.0961 13 6 9.5348 -1.7517 -5.3223 14 8 8.7689 -2.1019 -6.2007 15 7 10.8625 -1.9231 -5.4779 16 6 11.3837 -2.5317 -6.7043 17 6 12.9098 -2.6089 -6.6266 18 6 13.4460 -3.2344 -7.8885 19 1 12.7663 -3.5461 -8.6678 20 6 14.8043 -3.4097 -8.0478 21 7 15.6319 -3.0306 -7.0986 22 14 15.4690 -4.1843 -9.6122 23 1 15.7397 -3.1223 -10.6142 24 1 16.7279 -4.9110 -9.3085 25 1 14.4676 -5.1357 -10.1576 26 6 5.7854 -0.1829 -2.5428 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5683 0.8410 33 1 3.9784 2.1767 0.0889 34 1 5.8004 1.2392 0.5224 35 1 8.2222 0.9254 0.2375 36 1 9.1037 -0.0940 -1.8182 37 1 7.0062 -1.2820 -4.7207 38 1 9.6934 -0.8334 -3.3163 39 1 11.4730 -1.6443 -4.7775 40 1 10.9739 -3.5356 -6.8144 41 1 11.0943 -1.9250 -7.5623 42 1 13.3193 -1.6048 -6.5168 43 1 13.1997 -3.2154 -5.7686 44 1 16.5876 -3.1543 -7.2105 45 1 5.1020 -0.4927 -3.3196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275544112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -89.812093 kcal Electronic energy + Delta-G solvation = -24232.854809 eV Core-core repulsion = 20408.895971 eV Total energy + Delta-G solvation = -3823.958838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49454 -39.25090 -38.54961 -37.60212 -34.91884 -33.79725 -32.81809 -31.80870 -30.46511 -29.71591 -28.97636 -26.87476 -25.38708 -24.23886 -23.01377 -22.82343 -21.20718 -20.67342 -19.44610 -18.11008 -17.36211 -17.19204 -16.77328 -16.38810 -16.03119 -15.90269 -15.62116 -15.37188 -14.83303 -14.80180 -14.62779 -14.33835 -13.73471 -13.65752 -13.28744 -13.13477 -13.01247 -12.81970 -12.45100 -12.28398 -12.06944 -11.89571 -11.69584 -11.42686 -11.19120 -11.09503 -11.02892 -10.62971 -10.38721 -10.26214 -10.25221 -9.83096 -9.47923 -9.20552 -8.74206 -8.53410 -8.39610 -8.23514 -6.08194 -4.10911 0.39560 1.17953 1.93455 2.73516 3.17529 3.30737 3.36733 3.40948 3.45970 3.74083 3.77574 4.28194 4.42376 4.48992 4.51428 4.56689 4.67151 4.69449 4.79822 4.85564 4.87201 4.93295 4.98469 5.10555 5.20074 5.20472 5.26081 5.28984 5.46280 5.64125 5.92328 5.97523 6.12658 6.18304 6.36968 6.38726 6.48712 6.50721 6.56985 6.75818 6.93704 7.07744 7.53345 7.63139 7.90115 8.04478 8.29265 8.67192 8.95081 9.53932 11.03410 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037808 B = 0.001514 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.412795 B =18490.541970 C =19112.027955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.307 6.307 6 C 0.128 3.872 7 C -0.206 4.206 8 C -0.080 4.080 9 C -0.142 4.142 10 C -0.025 4.025 11 C -0.042 4.042 12 C -0.186 4.186 13 C 0.534 3.466 14 O -0.554 6.554 15 N -0.715 5.715 16 C 0.121 3.879 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.132 4.132 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.399 0.601 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.262 0.738 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 12.033 20.551 35.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.221 6.221 6 C 0.083 3.917 7 C -0.225 4.225 8 C -0.098 4.098 9 C -0.160 4.160 10 C -0.025 4.025 11 C -0.062 4.062 12 C -0.207 4.207 13 C 0.322 3.678 14 O -0.435 6.435 15 N -0.364 5.364 16 C -0.002 4.002 17 C -0.026 4.026 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.150 4.150 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.332 11.557 19.815 34.922 hybrid contribution 0.721 0.118 -0.142 0.744 sum -25.612 11.675 19.673 34.341 Atomic orbital electron populations 1.22777 0.80654 1.03155 1.00003 1.87977 1.19967 1.26978 1.95416 1.22578 0.91496 0.85914 1.01499 1.22844 0.93787 0.98221 0.86599 1.86139 1.19978 1.76981 1.38971 1.18834 0.82394 0.96035 0.94439 1.21326 0.94319 1.07134 0.99708 1.20868 0.94487 0.97148 0.97300 1.21377 1.00035 1.00896 0.93719 1.18817 0.92195 0.97497 0.93986 1.22272 0.95794 0.93427 0.94685 1.23155 0.96548 1.02749 0.98249 1.18317 0.82935 0.79494 0.87082 1.90783 1.57299 1.51738 1.43683 1.46246 1.06435 1.61688 1.21996 1.21742 0.97541 0.96690 0.84201 1.19334 0.87181 0.97879 0.98175 1.21059 0.91991 1.40491 1.02488 0.92234 1.24991 0.97007 0.95523 0.96738 1.69959 1.03014 1.47387 1.32966 0.86511 0.78400 0.79431 0.83212 1.20563 1.21170 1.19721 1.20595 0.94620 1.02748 0.97056 0.89349 0.94044 0.93820 0.91046 0.91958 0.90990 0.90350 0.85563 0.85420 0.85097 0.84461 0.85305 0.76762 0.92451 0.92460 0.95903 0.95890 0.92866 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.19 10.67 -40.08 -0.43 -3.62 16 3 C 0.06 0.35 6.32 37.15 0.23 0.58 16 4 C 0.06 0.39 5.12 37.15 0.19 0.58 16 5 O -0.31 -3.07 10.10 -24.30 -0.25 -3.32 16 6 C 0.13 1.31 6.68 -39.28 -0.26 1.05 16 7 C -0.21 -1.75 9.04 -39.32 -0.36 -2.10 16 8 C -0.08 -0.67 10.02 -39.67 -0.40 -1.07 16 9 C -0.14 -1.37 9.41 -39.09 -0.37 -1.74 16 10 C -0.02 -0.27 5.87 -105.08 -0.62 -0.89 16 11 C -0.04 -0.52 9.46 -37.15 -0.35 -0.87 16 12 C -0.19 -2.44 9.41 -37.50 -0.35 -2.80 16 13 C 0.53 9.38 7.74 -12.96 -0.10 9.28 16 14 O -0.55 -11.79 16.23 5.20 0.08 -11.71 16 15 N -0.71 -12.75 5.55 -61.71 -0.34 -13.09 16 16 C 0.12 2.61 5.61 -4.05 -0.02 2.59 16 17 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 22 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.13 -1.44 9.73 -38.95 -0.38 -1.82 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 7.64 -51.93 -0.40 0.03 16 33 H 0.08 0.32 7.67 -51.93 -0.40 -0.07 16 34 H 0.13 0.76 6.28 -52.49 -0.33 0.43 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 1.07 6.16 -52.48 -0.32 0.75 16 37 H 0.14 1.80 7.52 -52.49 -0.39 1.40 16 38 H 0.13 1.31 6.07 -52.49 -0.32 0.99 16 39 H 0.40 6.04 8.45 -40.82 -0.35 5.70 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.24 8.31 -40.81 -0.34 6.90 16 45 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -34.47 387.00 -8.30 -42.77 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.70 Total: 1.26 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.22 Total: -9.13 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.39 Total: -38.56 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.59 Total: -18.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.47 -8.30 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275544112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.043 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds