Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99667 * 2 1 4 4 C 1.52992 * 109.47082 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47585 * 64.99748 * 4 3 2 6 6 C 1.35907 * 117.00236 * 180.02562 * 5 4 3 7 7 C 1.38898 * 119.97190 * 0.25690 * 6 5 4 8 8 C 1.38290 * 120.28940 * 180.30075 * 7 6 5 9 9 C 1.37940 * 120.23101 * 359.71840 * 8 7 6 10 10 C 1.39832 * 119.93938 * 0.02562 * 9 8 7 11 11 C 1.47209 * 120.14444 * 179.97438 * 10 9 8 12 12 C 1.34814 * 120.00061 * 0.02562 * 11 10 9 13 13 C 1.46435 * 119.99844 * 179.97438 * 12 11 10 14 14 O 1.21692 * 119.99783 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99696 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00148 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47456 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47341 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99782 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00058 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99923 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47491 * 89.99457 * 22 20 18 24 24 H 1.48502 * 109.46802 * 209.99867 * 22 20 18 25 25 H 1.48499 * 109.46703 * 329.99324 * 22 20 18 26 26 C 1.38381 * 119.96963 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 300.00041 * 1 2 3 29 29 H 1.09001 * 109.47618 * 59.99803 * 1 2 3 30 30 H 1.08999 * 109.47544 * 59.99983 * 3 2 1 31 31 H 1.09006 * 109.47233 * 300.00126 * 3 2 1 32 32 H 1.09004 * 109.46845 * 304.99959 * 4 3 2 33 33 H 1.09007 * 109.47620 * 184.99865 * 4 3 2 34 34 H 1.08001 * 119.85674 * 359.97438 * 7 6 5 35 35 H 1.08002 * 119.88519 * 179.70089 * 8 7 6 36 36 H 1.08006 * 120.03093 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.00436 * 180.02562 * 11 10 9 38 38 H 1.08000 * 119.99502 * 359.97438 * 12 11 10 39 39 H 0.97008 * 120.00268 * 0.02562 * 15 13 12 40 40 H 1.08995 * 109.47653 * 300.00403 * 16 15 13 41 41 H 1.09002 * 109.46887 * 60.00319 * 16 15 13 42 42 H 1.09003 * 109.47342 * 300.00217 * 17 16 15 43 43 H 1.09001 * 109.47196 * 60.00623 * 17 16 15 44 44 H 0.97011 * 119.99864 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.11922 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3019 0.3979 -1.3836 7 6 6.1816 0.7900 -0.3827 8 6 7.5438 0.6138 -0.5430 9 6 8.0392 0.0417 -1.6962 10 6 7.1620 -0.3614 -2.7078 11 6 7.6858 -0.9719 -3.9407 12 6 9.0138 -1.1439 -4.0961 13 6 9.5348 -1.7517 -5.3223 14 8 8.7689 -2.1019 -6.2007 15 7 10.8625 -1.9231 -5.4779 16 6 11.3837 -2.5317 -6.7043 17 6 12.9098 -2.6089 -6.6266 18 6 13.4460 -3.2344 -7.8885 19 1 12.7663 -3.5461 -8.6678 20 6 14.8043 -3.4097 -8.0478 21 7 15.6319 -3.0306 -7.0986 22 14 15.4690 -4.1843 -9.6122 23 1 15.7397 -3.1223 -10.6142 24 1 16.7279 -4.9110 -9.3085 25 1 14.4676 -5.1357 -10.1576 26 6 5.7854 -0.1829 -2.5428 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5683 0.8410 33 1 3.9784 2.1767 0.0889 34 1 5.8004 1.2392 0.5224 35 1 8.2222 0.9254 0.2375 36 1 9.1037 -0.0940 -1.8182 37 1 7.0062 -1.2820 -4.7207 38 1 9.6934 -0.8334 -3.3163 39 1 11.4730 -1.6443 -4.7775 40 1 10.9739 -3.5356 -6.8144 41 1 11.0943 -1.9250 -7.5623 42 1 13.3193 -1.6048 -6.5168 43 1 13.1997 -3.2154 -5.7686 44 1 16.5876 -3.1543 -7.2105 45 1 5.1020 -0.4927 -3.3196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275544112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = -112.319970 kcal Electronic energy + Delta-G solvation = -24233.830823 eV Core-core repulsion = 20408.895971 eV Total energy + Delta-G solvation = -3824.934853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19137 -40.64088 -39.15722 -38.24285 -36.63923 -34.81660 -34.76326 -32.39352 -31.80301 -30.80936 -29.91889 -27.31453 -27.03293 -25.30124 -23.86376 -23.59328 -22.79091 -21.88012 -20.54504 -18.92538 -18.59451 -18.19525 -17.82945 -17.40185 -16.89644 -16.57347 -16.47103 -16.41983 -16.35309 -16.17449 -15.68515 -15.44159 -14.82785 -14.63824 -14.47036 -14.26745 -14.17043 -13.84370 -13.26681 -13.25241 -13.21761 -12.94445 -12.66803 -12.53678 -12.44035 -12.39039 -12.24669 -11.96766 -11.76901 -11.67346 -11.46583 -11.17923 -10.95799 -10.68455 -10.59937 -10.05877 -9.49384 -9.09144 -8.23698 -6.34080 -0.50461 0.46651 0.98178 1.42350 1.42759 1.54305 2.13035 2.29234 2.31449 2.48317 2.79374 2.89159 3.11127 3.61390 3.78311 3.94421 3.96864 4.08157 4.12160 4.20951 4.31868 4.34139 4.35927 4.49103 4.49847 4.50299 4.50952 4.53519 4.58397 4.72729 4.85445 4.85896 4.92752 5.09190 5.23123 5.28802 5.31010 5.45306 5.50385 5.58645 5.63787 5.75769 5.79246 6.16669 6.17047 6.44205 6.64603 6.78849 7.26814 7.35218 8.88110 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037808 B = 0.001514 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.412795 B =18490.541970 C =19112.027955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.057 3.943 4 C 0.052 3.948 5 O -0.330 6.330 6 C 0.115 3.885 7 C -0.198 4.198 8 C -0.079 4.079 9 C -0.144 4.144 10 C -0.043 4.043 11 C -0.023 4.023 12 C -0.196 4.196 13 C 0.533 3.467 14 O -0.599 6.599 15 N -0.710 5.710 16 C 0.139 3.861 17 C 0.022 3.978 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.413 0.587 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.266 0.734 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.174 13.174 22.457 36.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.022 4.022 5 O -0.244 6.244 6 C 0.070 3.930 7 C -0.216 4.216 8 C -0.097 4.097 9 C -0.162 4.162 10 C -0.043 4.043 11 C -0.043 4.043 12 C -0.217 4.217 13 C 0.324 3.676 14 O -0.482 6.482 15 N -0.359 5.359 16 C 0.015 3.985 17 C -0.015 4.015 18 C -0.587 4.587 19 H 0.076 0.924 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.167 4.167 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.140 0.860 38 H 0.182 0.818 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.549 12.717 21.753 36.603 hybrid contribution 0.635 -0.169 -0.616 0.901 sum -25.914 12.548 21.137 35.718 Atomic orbital electron populations 1.22912 0.79391 1.03674 1.01054 1.87923 1.21585 1.28710 1.95672 1.22773 0.91033 0.85217 1.02842 1.23168 0.94402 0.99330 0.85336 1.86118 1.19913 1.77487 1.40888 1.18968 0.83001 0.96335 0.94662 1.21696 0.94261 1.05694 0.99951 1.21258 0.94927 0.96075 0.97436 1.21650 1.00662 1.00264 0.93593 1.18739 0.92540 0.99073 0.93996 1.22313 0.95417 0.91725 0.94843 1.22980 0.97156 1.04279 0.97249 1.18965 0.82151 0.78550 0.87936 1.90758 1.58157 1.53716 1.45618 1.46031 1.07117 1.61618 1.21175 1.21244 0.95361 0.96230 0.85648 1.19143 0.89122 0.96507 0.96742 1.21473 0.92630 1.41043 1.03558 0.92414 1.25849 0.97246 0.95865 1.00059 1.70057 1.03431 1.48194 1.34815 0.85452 0.77806 0.78680 0.79155 1.19748 1.20411 1.19176 1.20685 0.94766 1.03540 0.97752 0.89235 0.92265 0.93448 0.88119 0.92062 0.90565 0.87843 0.82773 0.82327 0.83479 0.85974 0.81844 0.75040 0.93594 0.93552 0.97121 0.97132 0.92525 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.65 10.67 -144.34 -1.54 -8.19 16 3 C 0.06 0.56 6.32 71.98 0.45 1.01 16 4 C 0.05 0.56 5.12 71.98 0.37 0.93 16 5 O -0.33 -6.35 10.10 -87.87 -0.89 -7.23 16 6 C 0.12 2.23 6.68 22.46 0.15 2.38 16 7 C -0.20 -2.78 9.04 22.44 0.20 -2.58 16 8 C -0.08 -1.05 10.02 22.21 0.22 -0.83 16 9 C -0.14 -2.41 9.41 22.59 0.21 -2.20 16 10 C -0.04 -0.92 5.87 -20.16 -0.12 -1.04 16 11 C -0.02 -0.57 9.46 23.84 0.23 -0.35 16 12 C -0.20 -5.00 9.41 23.62 0.22 -4.77 16 13 C 0.53 18.90 7.74 86.38 0.67 19.57 16 14 O -0.60 -26.26 16.23 -4.32 -0.07 -26.33 16 15 N -0.71 -25.42 5.55 -467.37 -2.59 -28.01 16 16 C 0.14 6.16 5.61 86.38 0.48 6.64 16 17 C 0.02 1.14 5.09 29.85 0.15 1.29 16 18 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 22 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 C -0.15 -3.25 9.73 22.68 0.22 -3.03 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.74 7.64 -2.38 -0.02 0.72 16 33 H 0.10 0.55 7.67 -2.38 -0.02 0.53 16 34 H 0.15 1.23 6.28 -2.91 -0.02 1.21 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.92 6.16 -2.91 -0.02 1.90 16 37 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 38 H 0.16 2.92 6.07 -2.91 -0.02 2.91 16 39 H 0.41 12.31 8.45 -92.70 -0.78 11.52 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 45 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -75.49 387.00 2.84 -72.65 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.21 Total: 16.62 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.41 Total: -11.36 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.31 Total: -82.13 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -2.50 Total: -41.75 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -75.49 2.84 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275544112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.674 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds