Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34236 * 116.99713 * 2 1 4 4 O 1.20825 * 120.00110 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99477 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46755 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47159 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47310 * 299.99875 * 7 6 5 9 9 N 1.46497 * 109.47200 * 180.02562 * 8 7 6 10 10 C 1.39668 * 119.99931 * 154.99921 * 9 8 7 11 11 C 1.39011 * 120.04085 * 359.97438 * 10 9 8 12 12 C 1.38149 * 120.06218 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14087 * 359.72248 * 12 11 10 14 14 C 1.38918 * 120.07843 * 0.55432 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.71957 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31560 * 119.99556 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00143 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47154 * 210.00012 * 20 18 16 23 23 H 1.48499 * 109.47084 * 330.00172 * 20 18 16 24 24 C 1.38749 * 120.03916 * 179.97438 * 10 9 8 25 25 C 1.52993 * 109.46843 * 59.99861 * 8 7 6 26 26 C 1.52995 * 109.47531 * 299.99369 * 5 3 2 27 27 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47547 * 300.00079 * 1 2 3 29 29 H 1.08994 * 109.47707 * 60.00203 * 1 2 3 30 30 H 1.09001 * 109.47613 * 60.00256 * 5 3 2 31 31 H 1.08994 * 109.47678 * 59.99841 * 6 5 3 32 32 H 1.09000 * 109.47088 * 299.99617 * 6 5 3 33 33 H 1.09006 * 109.47181 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47364 * 60.00173 * 7 6 5 35 35 H 1.08997 * 109.46508 * 300.00090 * 8 7 6 36 36 H 0.97004 * 120.00080 * 334.99274 * 9 8 7 37 37 H 1.07992 * 119.96556 * 0.02562 * 11 10 9 38 38 H 1.07990 * 119.92905 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95764 * 180.29755 * 13 12 11 40 40 H 0.97002 * 119.99346 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.07271 * 359.95570 * 24 10 9 42 42 H 1.08994 * 109.47620 * 60.00297 * 25 8 7 43 43 H 1.09000 * 109.47024 * 180.02562 * 25 8 7 44 44 H 1.09001 * 109.47397 * 300.01020 * 26 5 3 45 45 H 1.09006 * 109.47073 * 60.00201 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 6 5.5279 2.8223 -0.0011 8 6 6.0750 2.1292 1.2485 9 7 7.5379 2.2065 1.2488 10 6 8.2405 2.1383 2.4540 11 6 7.5525 1.9977 3.6537 12 6 8.2470 1.9308 4.8460 13 6 9.6272 1.9976 4.8497 14 6 10.3204 2.1439 3.6548 15 8 11.6760 2.2151 3.6602 16 6 12.2927 2.2353 2.4613 17 1 11.7082 2.2781 1.5541 18 6 13.6771 2.2013 2.3932 19 7 14.2787 2.2215 1.2233 20 14 14.6879 2.1267 3.9622 21 1 14.9193 0.7080 4.3350 22 1 15.9932 2.8000 3.7426 23 1 13.9549 2.8127 5.0564 24 6 9.6261 2.2109 2.4552 25 6 5.6412 0.6621 1.2490 26 6 4.1138 0.5812 1.2483 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8908 31 1 3.6107 3.2365 0.8888 32 1 3.6100 3.2360 -0.8911 33 1 5.8370 3.8676 -0.0019 34 1 5.9178 2.3279 -0.8908 35 1 5.6851 2.6237 2.1382 36 1 8.0186 2.3049 0.4120 37 1 6.4741 1.9407 3.6535 38 1 7.7104 1.8211 5.7767 39 1 10.1673 1.9401 5.7832 40 1 15.2473 2.1973 1.1757 41 1 10.1632 2.3194 1.5245 42 1 6.0309 0.1676 0.3593 43 1 6.0305 0.1684 2.1394 44 1 3.7244 1.0751 2.1385 45 1 3.8048 -0.4641 1.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277229597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -99.347807 kcal Electronic energy + Delta-G solvation = -26187.416956 eV Core-core repulsion = 22363.044619 eV Total energy + Delta-G solvation = -3824.372337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04812 -39.45872 -38.59237 -36.99825 -36.52323 -34.30998 -32.29573 -31.18533 -30.79723 -29.02124 -28.31131 -27.31219 -25.15699 -23.76888 -23.01391 -21.72665 -21.38877 -20.36284 -19.96500 -17.92128 -17.81902 -17.46433 -17.08853 -16.73637 -15.99744 -15.30120 -15.14100 -14.71694 -14.48557 -14.28346 -14.02769 -13.82106 -13.63569 -13.38129 -13.17966 -13.13939 -12.91652 -12.51749 -12.40975 -12.21579 -12.08766 -11.84200 -11.76279 -11.48510 -11.39720 -11.16707 -10.92305 -10.85391 -10.75744 -10.57666 -10.48711 -10.43104 -10.16469 -9.42565 -9.38742 -8.78920 -7.45274 -6.83024 -6.36870 -4.03473 1.86141 2.31354 2.35849 2.48127 3.25494 3.29122 3.44447 3.67659 4.24043 4.28306 4.35554 4.42192 4.64038 4.72110 4.76959 4.81224 4.90484 4.92655 4.96605 5.09603 5.14709 5.16723 5.18493 5.20648 5.43879 5.53991 5.64128 5.70380 5.76552 5.86454 5.89413 5.92762 6.04207 6.07466 6.16295 6.21267 6.34853 6.53851 6.60123 6.98643 7.24457 7.30250 7.39866 7.54793 7.83588 7.94680 8.08320 8.21438 8.99411 9.64239 10.71058 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.002290 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787185 B =12225.927092 C =12675.375447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.507 6.507 5 C -0.080 4.080 6 C -0.098 4.098 7 C -0.126 4.126 8 C 0.155 3.845 9 N -0.748 5.748 10 C 0.250 3.750 11 C -0.273 4.273 12 C -0.041 4.041 13 C -0.238 4.238 14 C 0.195 3.805 15 O -0.219 6.219 16 C -0.385 4.385 17 H 0.105 0.895 18 C 0.061 3.939 19 N -0.883 5.883 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.291 4.291 25 C -0.134 4.134 26 C -0.107 4.107 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.396 0.604 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.278 0.722 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.239 -3.774 -2.670 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.395 6.395 5 C -0.099 4.099 6 C -0.137 4.137 7 C -0.164 4.164 8 C 0.049 3.951 9 N -0.379 5.379 10 C 0.149 3.851 11 C -0.296 4.296 12 C -0.060 4.060 13 C -0.259 4.259 14 C 0.143 3.857 15 O -0.124 6.124 16 C -0.461 4.461 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.521 5.521 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.314 4.314 25 C -0.173 4.173 26 C -0.145 4.145 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.264 -3.469 -2.556 24.644 hybrid contribution 0.442 0.001 -0.013 0.443 sum -23.822 -3.468 -2.569 24.209 Atomic orbital electron populations 1.23272 0.76428 1.03731 1.02534 1.86527 1.23364 1.33588 1.83997 1.23941 0.92169 0.81228 0.71869 1.90668 1.67256 1.36394 1.45158 1.21203 0.86394 0.99829 1.02511 1.21388 0.95252 0.93067 1.03949 1.21808 0.94540 1.01844 0.98226 1.20811 0.81162 0.94729 0.98409 1.44612 1.04255 1.82717 1.06273 1.17473 0.90342 0.91709 0.85572 1.20165 0.98230 1.19747 0.91448 1.20376 0.92920 0.96110 0.96612 1.20027 0.93625 1.16198 0.96043 1.18808 0.83332 0.90775 0.92830 1.83585 1.14836 1.80735 1.33195 1.20748 0.90824 1.51738 0.82795 0.87727 1.24465 0.95779 0.95848 0.98036 1.69651 1.10470 1.48607 1.23420 0.86188 0.78838 0.78921 0.82999 1.19950 1.20908 1.18344 1.20620 0.91999 1.19572 0.99255 1.22065 0.93708 0.97946 1.03612 1.21505 0.96368 1.01030 0.95645 0.88060 0.91881 0.91943 0.87148 0.90652 0.90655 0.90478 0.91157 0.90287 0.76986 0.87558 0.87120 0.87008 0.91189 0.85227 0.91315 0.90396 0.91233 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.13 10.47 -39.27 -0.41 -3.54 16 3 C 0.46 4.50 7.26 36.01 0.26 4.76 16 4 O -0.51 -6.22 15.73 -18.75 -0.29 -6.51 16 5 C -0.08 -0.64 2.63 -91.77 -0.24 -0.88 16 6 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 7 C -0.13 -1.10 5.39 -26.73 -0.14 -1.25 16 8 C 0.15 1.66 2.15 -67.94 -0.15 1.52 16 9 N -0.75 -10.44 5.25 -52.19 -0.27 -10.71 16 10 C 0.25 4.45 6.63 -83.81 -0.56 3.90 16 11 C -0.27 -4.55 8.85 -39.33 -0.35 -4.89 16 12 C -0.04 -0.71 10.03 -39.64 -0.40 -1.11 16 13 C -0.24 -4.83 9.99 -39.35 -0.39 -5.23 16 14 C 0.20 4.58 6.64 -39.14 -0.26 4.32 16 15 O -0.22 -5.85 8.58 0.03 0.00 -5.85 16 16 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 17 H 0.11 3.03 5.43 -52.49 -0.29 2.74 16 18 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 19 N -0.88 -25.63 13.96 55.48 0.77 -24.86 16 20 Si 0.90 21.90 28.62 -169.99 -4.86 17.04 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.29 -6.27 9.01 -39.20 -0.35 -6.62 16 25 C -0.13 -1.30 5.44 -26.76 -0.15 -1.44 16 26 C -0.11 -0.86 5.13 -26.76 -0.14 -1.00 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.90 6.48 -51.93 -0.34 0.57 16 36 H 0.40 5.28 8.61 -40.82 -0.35 4.93 16 37 H 0.11 1.51 6.10 -52.49 -0.32 1.19 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 2.95 5.64 -52.48 -0.30 2.66 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.59 8.11 -51.93 -0.42 0.16 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -31.70 367.40 -7.85 -39.55 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.61 Total: 5.92 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.70 Total: -16.57 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.50 Total: -35.57 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.71 Total: -15.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.70 -7.85 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277229597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.797 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds