Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34236 * 116.99713 * 2 1 4 4 O 1.20825 * 120.00110 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99477 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46755 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47159 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47310 * 299.99875 * 7 6 5 9 9 N 1.46497 * 109.47200 * 180.02562 * 8 7 6 10 10 C 1.39668 * 119.99931 * 154.99921 * 9 8 7 11 11 C 1.39011 * 120.04085 * 359.97438 * 10 9 8 12 12 C 1.38149 * 120.06218 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14087 * 359.72248 * 12 11 10 14 14 C 1.38918 * 120.07843 * 0.55432 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.71957 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31560 * 119.99556 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00143 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47154 * 210.00012 * 20 18 16 23 23 H 1.48499 * 109.47084 * 330.00172 * 20 18 16 24 24 C 1.38749 * 120.03916 * 179.97438 * 10 9 8 25 25 C 1.52993 * 109.46843 * 59.99861 * 8 7 6 26 26 C 1.52995 * 109.47531 * 299.99369 * 5 3 2 27 27 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47547 * 300.00079 * 1 2 3 29 29 H 1.08994 * 109.47707 * 60.00203 * 1 2 3 30 30 H 1.09001 * 109.47613 * 60.00256 * 5 3 2 31 31 H 1.08994 * 109.47678 * 59.99841 * 6 5 3 32 32 H 1.09000 * 109.47088 * 299.99617 * 6 5 3 33 33 H 1.09006 * 109.47181 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47364 * 60.00173 * 7 6 5 35 35 H 1.08997 * 109.46508 * 300.00090 * 8 7 6 36 36 H 0.97004 * 120.00080 * 334.99274 * 9 8 7 37 37 H 1.07992 * 119.96556 * 0.02562 * 11 10 9 38 38 H 1.07990 * 119.92905 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95764 * 180.29755 * 13 12 11 40 40 H 0.97002 * 119.99346 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.07271 * 359.95570 * 24 10 9 42 42 H 1.08994 * 109.47620 * 60.00297 * 25 8 7 43 43 H 1.09000 * 109.47024 * 180.02562 * 25 8 7 44 44 H 1.09001 * 109.47397 * 300.01020 * 26 5 3 45 45 H 1.09006 * 109.47073 * 60.00201 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 6 5.5279 2.8223 -0.0011 8 6 6.0750 2.1292 1.2485 9 7 7.5379 2.2065 1.2488 10 6 8.2405 2.1383 2.4540 11 6 7.5525 1.9977 3.6537 12 6 8.2470 1.9308 4.8460 13 6 9.6272 1.9976 4.8497 14 6 10.3204 2.1439 3.6548 15 8 11.6760 2.2151 3.6602 16 6 12.2927 2.2353 2.4613 17 1 11.7082 2.2781 1.5541 18 6 13.6771 2.2013 2.3932 19 7 14.2787 2.2215 1.2233 20 14 14.6879 2.1267 3.9622 21 1 14.9193 0.7080 4.3350 22 1 15.9932 2.8000 3.7426 23 1 13.9549 2.8127 5.0564 24 6 9.6261 2.2109 2.4552 25 6 5.6412 0.6621 1.2490 26 6 4.1138 0.5812 1.2483 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8908 31 1 3.6107 3.2365 0.8888 32 1 3.6100 3.2360 -0.8911 33 1 5.8370 3.8676 -0.0019 34 1 5.9178 2.3279 -0.8908 35 1 5.6851 2.6237 2.1382 36 1 8.0186 2.3049 0.4120 37 1 6.4741 1.9407 3.6535 38 1 7.7104 1.8211 5.7767 39 1 10.1673 1.9401 5.7832 40 1 15.2473 2.1973 1.1757 41 1 10.1632 2.3194 1.5245 42 1 6.0309 0.1676 0.3593 43 1 6.0305 0.1684 2.1394 44 1 3.7244 1.0751 2.1385 45 1 3.8048 -0.4641 1.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277229597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -117.779608 kcal Electronic energy + Delta-G solvation = -26188.216219 eV Core-core repulsion = 22363.044619 eV Total energy + Delta-G solvation = -3825.171600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78008 -40.90688 -39.76873 -38.27224 -37.46794 -35.52716 -34.35005 -32.04900 -31.76676 -30.54173 -29.34586 -28.19355 -27.11473 -24.64136 -23.84254 -23.18757 -22.49005 -21.48749 -20.83956 -19.74047 -19.08898 -18.58476 -17.80443 -17.50460 -17.20326 -16.84619 -16.44487 -16.01604 -15.66848 -15.45536 -15.31442 -15.09456 -14.91016 -14.62223 -14.22111 -14.09179 -14.03813 -13.94189 -13.72528 -13.27524 -13.15788 -12.92451 -12.72755 -12.68587 -12.46818 -12.35153 -12.13764 -12.04801 -11.87903 -11.79801 -11.54505 -11.40410 -11.37351 -11.18999 -10.92502 -10.58111 -9.15050 -8.46876 -8.21193 -6.18744 0.76758 0.91376 1.13446 1.32611 1.37379 1.53835 1.74760 2.30573 2.53402 2.84653 3.17756 3.28602 3.55261 3.64727 3.75125 4.01212 4.15650 4.21335 4.26430 4.31144 4.32683 4.33516 4.40860 4.48628 4.49552 4.60385 4.66359 4.72155 4.81430 4.82741 4.92841 5.04702 5.09011 5.10111 5.16152 5.18347 5.33402 5.38641 5.42277 5.47891 5.51779 5.78849 5.87277 5.93748 6.20661 6.63810 6.69738 6.88527 6.88670 7.66357 8.64836 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.002290 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787185 B =12225.927092 C =12675.375447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.077 4.077 6 C -0.092 4.092 7 C -0.118 4.118 8 C 0.151 3.849 9 N -0.741 5.741 10 C 0.257 3.743 11 C -0.257 4.257 12 C -0.028 4.028 13 C -0.252 4.252 14 C 0.157 3.843 15 O -0.247 6.247 16 C -0.393 4.393 17 H 0.080 0.920 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.264 1.264 24 C -0.312 4.312 25 C -0.128 4.128 26 C -0.098 4.098 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.398 0.602 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.283 0.717 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.991 -4.626 -1.492 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.428 6.428 5 C -0.096 4.096 6 C -0.130 4.130 7 C -0.156 4.156 8 C 0.046 3.954 9 N -0.370 5.370 10 C 0.152 3.848 11 C -0.279 4.279 12 C -0.046 4.046 13 C -0.273 4.273 14 C 0.108 3.892 15 O -0.154 6.154 16 C -0.470 4.470 17 H 0.098 0.902 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.188 1.188 24 C -0.336 4.336 25 C -0.167 4.167 26 C -0.137 4.137 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.088 -4.337 -1.401 27.468 hybrid contribution 0.881 0.236 -0.432 1.009 sum -26.206 -4.101 -1.834 26.589 Atomic orbital electron populations 1.23530 0.75068 1.05614 1.02428 1.86518 1.24771 1.33000 1.83556 1.24189 0.92658 0.81037 0.70936 1.90660 1.68012 1.37378 1.46735 1.21223 0.85485 0.99605 1.03289 1.21309 0.94533 0.93466 1.03741 1.21729 0.94804 1.01498 0.97576 1.21063 0.78802 0.95990 0.99520 1.44809 1.05731 1.81237 1.05179 1.17556 0.89107 0.90442 0.87649 1.20628 0.99964 1.16819 0.90538 1.20876 0.91627 0.93459 0.98664 1.20302 0.95105 1.16808 0.95108 1.19409 0.82492 0.92515 0.94819 1.83527 1.16670 1.83353 1.31892 1.20687 0.91255 1.51987 0.83037 0.90244 1.25276 0.96739 0.95782 1.01261 1.69734 1.11020 1.50654 1.25234 0.85225 0.77532 0.79241 0.78760 1.19095 1.19267 1.18846 1.20582 0.93843 1.21348 0.97837 1.21968 0.94882 0.96568 1.03240 1.21427 0.94829 1.01739 0.95666 0.85246 0.92071 0.92035 0.85475 0.91333 0.90517 0.90835 0.90150 0.90245 0.76806 0.84013 0.82701 0.86294 0.90719 0.87854 0.91043 0.91509 0.91062 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.47 10.47 -51.48 -0.54 -6.01 16 3 C 0.47 8.06 7.26 71.24 0.52 8.58 16 4 O -0.54 -12.41 15.73 21.97 0.35 -12.07 16 5 C -0.08 -1.02 2.63 -11.54 -0.03 -1.05 16 6 C -0.09 -1.33 4.49 30.60 0.14 -1.19 16 7 C -0.12 -1.80 5.39 30.59 0.16 -1.63 16 8 C 0.15 2.84 2.15 44.99 0.10 2.94 16 9 N -0.74 -19.67 5.25 -319.03 -1.67 -21.34 16 10 C 0.26 8.85 6.63 38.20 0.25 9.10 16 11 C -0.26 -7.69 8.85 22.43 0.20 -7.50 16 12 C -0.03 -0.86 10.03 22.23 0.22 -0.64 16 13 C -0.25 -10.00 9.99 22.42 0.22 -9.78 16 14 C 0.16 7.60 6.64 22.56 0.15 7.75 16 15 O -0.25 -13.81 8.58 -22.82 -0.20 -14.00 16 16 C -0.39 -23.61 9.95 67.92 0.68 -22.93 16 17 H 0.08 4.99 5.43 -2.91 -0.02 4.98 16 18 C 0.01 0.43 5.49 84.83 0.47 0.89 16 19 N -0.93 -55.92 13.96 21.61 0.30 -55.62 16 20 Si 0.97 46.35 28.62 68.60 1.96 48.31 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 24 C -0.31 -13.94 9.01 22.52 0.20 -13.74 16 25 C -0.13 -2.09 5.44 30.58 0.17 -1.92 16 26 C -0.10 -1.26 5.13 30.58 0.16 -1.10 16 27 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 29 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.08 1.12 8.10 -2.39 -0.02 1.11 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.54 6.48 -2.39 -0.02 1.52 16 36 H 0.40 10.44 8.61 -92.71 -0.80 9.64 16 37 H 0.14 3.30 6.10 -2.91 -0.02 3.28 16 38 H 0.16 3.48 8.06 -2.92 -0.02 3.45 16 39 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.10 5.10 5.64 -2.91 -0.02 5.08 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.28 7.71 -2.39 -0.02 1.26 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 1.01 8.11 -2.38 -0.02 1.00 16 Total: -1.00 -72.24 367.40 5.21 -67.03 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.21 Total: 24.44 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.80 Total: -30.75 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -1.37 Total: -76.96 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.39 Total: -32.08 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal Total: -72.24 5.21 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277229597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.746 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds