Wall clock time and date at job start Tue Mar 31 2020 12:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99981 * 2 1 4 4 H 1.09010 * 109.46930 * 30.62799 * 3 2 1 5 5 C 1.50699 * 109.47235 * 270.63032 * 3 2 1 6 6 O 1.21287 * 119.99908 * 355.00234 * 5 3 2 7 7 N 1.34777 * 120.00041 * 174.99547 * 5 3 2 8 8 C 1.39920 * 120.00107 * 174.85900 * 7 5 3 9 9 C 1.38930 * 120.04349 * 146.64247 * 8 7 5 10 10 C 1.38119 * 120.04223 * 179.70048 * 9 8 7 11 11 C 1.38214 * 120.12434 * 0.60050 * 10 9 8 12 12 C 1.38770 * 120.08012 * 359.67301 * 11 10 9 13 13 O 1.35908 * 120.01720 * 180.02562 * 12 11 10 14 14 C 1.42903 * 116.99930 * 0.02720 * 13 12 11 15 15 C 1.52998 * 109.46734 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46979 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00232 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47256 * 59.99829 * 20 18 16 22 22 H 1.48497 * 109.47296 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46919 * 300.00182 * 20 18 16 24 24 C 1.38618 * 119.96292 * 0.02580 * 12 11 10 25 25 C 1.53000 * 109.47171 * 150.62632 * 3 2 1 26 26 C 1.52993 * 117.50098 * 227.98942 * 25 3 2 27 27 C 1.52989 * 117.50177 * 296.65673 * 25 3 2 28 28 H 1.08999 * 109.47122 * 184.72775 * 1 2 3 29 29 H 1.09000 * 109.47067 * 304.72876 * 1 2 3 30 30 H 1.09002 * 109.47000 * 64.73550 * 1 2 3 31 31 H 0.97004 * 120.00062 * 354.86456 * 7 5 3 32 32 H 1.08001 * 119.97817 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.94016 * 180.29503 * 10 9 8 34 34 H 1.07999 * 119.95989 * 179.70185 * 11 10 9 35 35 H 1.09004 * 109.47004 * 300.00010 * 14 13 12 36 36 H 1.08995 * 109.46968 * 59.99693 * 14 13 12 37 37 H 1.09000 * 109.46881 * 299.99377 * 15 14 13 38 38 H 1.08995 * 109.47574 * 60.00149 * 15 14 13 39 39 H 0.96996 * 119.99884 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.06345 * 180.02562 * 24 12 11 41 41 H 1.09000 * 115.54348 * 82.32648 * 25 3 2 42 42 H 1.09000 * 117.50231 * 215.00519 * 26 25 3 43 43 H 1.08999 * 117.49890 * 0.03243 * 26 25 3 44 44 H 1.09003 * 117.49867 * 359.97211 * 27 25 3 45 45 H 1.08999 * 117.50276 * 144.97139 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3501 1.9971 0.5236 5 6 2.2003 1.7707 -1.4207 6 8 1.9556 1.0210 -2.3422 7 7 2.6421 3.0199 -1.6673 8 6 2.9212 3.4170 -2.9796 9 6 2.7003 4.7317 -3.3705 10 6 2.9817 5.1251 -4.6642 11 6 3.4718 4.2098 -5.5765 12 6 3.6890 2.8939 -5.1932 13 8 4.1715 1.9950 -6.0912 14 6 4.4332 2.4739 -7.4119 15 6 4.9673 1.3279 -8.2734 16 6 5.2440 1.8331 -9.6660 17 1 5.0571 2.8680 -9.9120 18 6 5.7356 0.9741 -10.6259 19 7 5.9627 -0.2862 -10.3264 20 14 6.0779 1.6002 -12.3523 21 1 7.0871 2.6879 -12.2934 22 1 6.5963 0.4879 -13.1885 23 1 4.8215 2.1224 -12.9476 24 6 3.4137 2.4968 -3.8940 25 6 3.3661 1.2601 0.7075 26 6 3.6476 2.3299 1.7644 27 6 3.3768 0.8848 2.1907 28 1 -0.3633 -1.0242 0.0847 29 1 -0.3633 0.5855 0.8446 30 1 -0.3633 0.4386 -0.9294 31 1 2.7666 3.6438 -0.9350 32 1 2.3124 5.4477 -2.6610 33 1 2.8138 6.1487 -4.9649 34 1 3.6863 4.5191 -6.5887 35 1 3.5113 2.8581 -7.8484 36 1 5.1747 3.2717 -7.3687 37 1 5.8894 0.9443 -7.8366 38 1 4.2262 0.5299 -8.3166 39 1 6.3089 -0.8903 -11.0017 40 1 3.5826 1.4731 -3.5938 41 1 4.2038 0.9231 0.0970 42 1 4.6705 2.6966 1.8494 43 1 2.8666 3.0657 1.9561 44 1 2.4178 0.6706 2.6626 45 1 4.2214 0.3005 2.5559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279434315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:14 Heat of formation + Delta-G solvation = -91.628605 kcal Electronic energy + Delta-G solvation = -25910.729166 eV Core-core repulsion = 22086.691559 eV Total energy + Delta-G solvation = -3824.037608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92330 -40.81575 -39.29159 -38.23855 -37.36628 -35.75078 -35.35934 -32.62780 -31.42954 -30.62935 -29.32518 -27.18551 -26.92336 -24.39357 -23.60296 -23.21686 -22.87984 -22.02007 -21.28205 -19.77572 -18.89905 -18.43267 -17.74338 -17.24175 -17.00268 -16.87946 -16.82131 -16.72282 -16.47114 -15.84779 -15.77416 -15.40773 -14.63711 -14.52878 -14.45313 -14.35398 -14.30147 -13.96917 -13.38974 -13.25590 -12.74891 -12.66035 -12.65423 -12.61553 -12.40858 -12.30233 -12.20287 -11.86797 -11.76654 -11.60344 -11.44449 -11.42535 -11.24203 -11.17256 -10.63842 -10.41717 -9.46132 -9.04519 -8.28092 -6.43017 0.18009 0.45889 1.39224 1.40312 1.44508 1.52494 1.77747 2.26168 2.40008 2.50792 2.79759 3.05895 3.18345 3.42720 3.71581 3.77737 3.88547 3.99389 4.14183 4.17229 4.18176 4.23561 4.23774 4.31958 4.42176 4.47367 4.52678 4.55779 4.67752 4.73396 4.79624 4.83286 5.02510 5.14803 5.21937 5.25435 5.28637 5.29988 5.38107 5.41892 5.49092 5.65804 5.86747 5.94141 6.04290 6.36507 6.53376 6.71777 7.03614 7.27370 8.85307 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002318 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.810436 B =12076.460313 C =12747.844514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.381 6.381 3 C 0.117 3.883 4 H 0.129 0.871 5 C 0.483 3.517 6 O -0.554 6.554 7 N -0.648 5.648 8 C 0.178 3.822 9 C -0.172 4.172 10 C -0.051 4.051 11 C -0.234 4.234 12 C 0.123 3.877 13 O -0.348 6.348 14 C 0.085 3.915 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.981 3.019 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.262 1.262 24 C -0.190 4.190 25 C -0.184 4.184 26 C -0.143 4.143 27 C -0.158 4.158 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.433 0.567 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.066 0.934 37 H -0.004 1.004 38 H -0.007 1.007 39 H 0.267 0.733 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 14.001 29.470 34.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.056 3.944 4 H 0.146 0.854 5 C 0.271 3.729 6 O -0.430 6.430 7 N -0.297 5.297 8 C 0.083 3.917 9 C -0.192 4.192 10 C -0.069 4.069 11 C -0.253 4.253 12 C 0.077 3.923 13 O -0.263 6.263 14 C 0.011 3.989 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.093 0.907 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.211 4.211 25 C -0.203 4.203 26 C -0.180 4.180 27 C -0.195 4.195 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.274 0.726 32 H 0.190 0.810 33 H 0.186 0.814 34 H 0.151 0.849 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.048 12.854 28.855 33.148 hybrid contribution 0.320 -0.377 -1.241 1.336 sum -9.728 12.477 27.613 31.825 Atomic orbital electron populations 1.23071 0.79226 1.04448 1.00626 1.88020 1.21651 1.26069 1.94109 1.21654 0.96610 0.87091 0.89073 0.85365 1.22371 0.75680 0.81323 0.93513 1.90799 1.49573 1.54959 1.47687 1.43352 1.64841 1.14490 1.07000 1.17456 0.95932 0.93481 0.84796 1.21149 1.05890 0.94201 0.97938 1.21175 0.93955 1.00053 0.91735 1.21542 1.08868 0.92319 1.02589 1.19266 0.93901 0.89588 0.89543 1.86103 1.79036 1.38672 1.22439 1.22903 0.99591 0.98355 0.78061 1.18981 0.94870 0.93328 0.93858 1.21366 1.44629 0.97209 0.95159 0.90720 1.26133 0.94690 0.94829 1.04354 1.70138 1.45248 1.05589 1.36341 0.85269 0.79197 0.77990 0.77187 1.18512 1.20819 1.18706 1.20226 1.07796 1.00784 0.92269 1.21999 0.95004 1.10120 0.93182 1.23303 1.04909 0.91958 0.97834 1.22977 1.04268 0.98861 0.93374 0.88399 0.90479 0.95320 0.72627 0.80992 0.81368 0.84859 0.92016 0.91559 0.98567 0.98893 0.92417 0.87807 0.89307 0.87014 0.85539 0.87458 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.86 113.37 1.23 1.59 16 2 O -0.38 -8.58 9.85 -129.99 -1.28 -9.86 16 3 C 0.12 1.96 2.69 29.85 0.08 2.04 16 4 H 0.13 1.03 7.51 -2.38 -0.02 1.01 16 5 C 0.48 12.10 6.86 87.66 0.60 12.70 16 6 O -0.55 -20.96 14.17 15.94 0.23 -20.73 16 7 N -0.65 -12.44 5.30 -303.55 -1.61 -14.05 16 8 C 0.18 4.71 6.28 38.14 0.24 4.95 16 9 C -0.17 -3.35 9.96 22.41 0.22 -3.13 16 10 C -0.05 -1.11 10.03 22.24 0.22 -0.89 16 11 C -0.23 -7.33 9.04 22.39 0.20 -7.13 16 12 C 0.12 4.90 6.68 22.49 0.15 5.05 16 13 O -0.35 -16.79 10.13 -92.51 -0.94 -17.73 16 14 C 0.09 4.01 4.68 71.98 0.34 4.34 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 17 H 0.07 4.01 7.74 -2.91 -0.02 3.99 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.93 -59.08 13.29 21.45 0.28 -58.79 16 20 Si 0.98 44.56 29.54 68.60 2.03 46.58 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 C -0.19 -7.11 8.59 22.49 0.19 -6.91 16 25 C -0.18 -2.61 5.31 -10.80 -0.06 -2.66 16 26 C -0.14 -0.84 10.18 30.62 0.31 -0.53 16 27 C -0.16 -1.53 10.21 30.62 0.31 -1.22 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 0.67 7.98 -2.39 -0.02 0.65 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.43 3.84 8.82 -92.71 -0.82 3.03 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 35 H 0.06 2.72 7.66 -2.38 -0.02 2.70 16 36 H 0.07 2.86 7.66 -2.39 -0.02 2.84 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.10 4.55 6.39 -2.91 -0.02 4.54 16 41 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.13 0.06 8.07 -2.39 -0.02 0.04 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -85.83 382.56 3.79 -82.04 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.18 Total: 13.97 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.90 Total: -21.42 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.32 Total: -72.84 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.99 Total: -48.32 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -85.83 3.79 -82.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279434315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.589 kcal (2) G-P(sol) polarization free energy of solvation -85.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds