Wall clock time and date at job start Tue Mar 31 2020 12:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.41598 * 113.99716 * 2 1 4 4 C 1.46496 * 120.00139 * 276.55450 * 3 2 1 5 5 C 1.53002 * 109.47353 * 266.92857 * 4 3 2 6 6 C 1.53184 * 109.53941 * 292.68319 * 5 4 3 7 7 C 1.53086 * 109.16183 * 183.15523 * 6 5 4 8 8 O 1.42900 * 109.41684 * 57.60753 * 7 6 5 9 9 C 1.42902 * 114.09845 * 298.84413 * 8 7 6 10 10 C 1.53086 * 109.41432 * 61.15562 * 9 8 7 11 11 C 1.34781 * 119.99704 * 96.56255 * 3 2 1 12 12 O 1.21589 * 119.99386 * 183.66608 * 11 3 2 13 13 C 1.47641 * 120.00413 * 3.65729 * 11 3 2 14 14 C 1.40012 * 119.89553 * 188.37266 * 13 11 3 15 15 C 1.36310 * 120.10501 * 180.25871 * 14 13 11 16 16 C 1.40890 * 119.89331 * 359.51831 * 15 14 13 17 17 C 1.41108 * 120.10467 * 180.22952 * 16 15 14 18 18 H 1.08000 * 120.00187 * 211.40072 * 17 16 15 19 19 C 1.40230 * 119.99918 * 31.40947 * 17 16 15 20 20 N 1.30647 * 119.99782 * 7.87940 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 187.88096 * 19 17 16 22 22 H 1.48501 * 109.47467 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47006 * 119.99951 * 21 19 17 24 24 H 1.48497 * 109.47446 * 239.99824 * 21 19 17 25 25 C 1.40886 * 119.79112 * 0.50169 * 16 15 14 26 26 C 1.36320 * 119.89151 * 359.73406 * 25 16 15 27 27 H 1.08996 * 109.47097 * 60.00326 * 1 2 3 28 28 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47351 * 300.00281 * 1 2 3 30 30 H 1.09007 * 109.46629 * 26.92514 * 4 3 2 31 31 H 1.09000 * 109.47288 * 146.92149 * 4 3 2 32 32 H 1.08989 * 109.54540 * 52.94770 * 5 4 3 33 33 H 1.09003 * 109.52008 * 303.05977 * 6 5 4 34 34 H 1.08997 * 109.52154 * 63.24312 * 6 5 4 35 35 H 1.09003 * 109.47769 * 297.62246 * 7 6 5 36 36 H 1.09007 * 109.48108 * 177.59510 * 7 6 5 37 37 H 1.09000 * 109.47804 * 301.17367 * 9 8 7 38 38 H 1.09004 * 109.48900 * 181.15056 * 9 8 7 39 39 H 1.09007 * 109.52103 * 182.48412 * 10 9 8 40 40 H 1.09000 * 109.52432 * 62.30237 * 10 9 8 41 41 H 1.07998 * 119.94754 * 359.97438 * 14 13 11 42 42 H 1.07997 * 120.05510 * 179.72402 * 15 14 13 43 43 H 0.97002 * 119.99528 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.05691 * 179.70861 * 25 16 15 45 45 H 1.08003 * 119.94442 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1705 2.0217 -1.2604 5 6 3.5668 1.7526 -1.8252 6 6 4.6202 2.3846 -0.9102 7 6 6.0075 2.1785 -1.5238 8 8 6.0374 2.7497 -2.8333 9 6 5.1060 2.1654 -3.7461 10 6 3.6825 2.3710 -3.2218 11 6 2.4009 1.8549 1.1596 12 8 2.8336 2.9912 1.1683 13 6 2.3090 1.0903 2.4193 14 6 2.5526 1.7277 3.6419 15 6 2.4740 1.0246 4.8070 16 6 2.1372 -0.3432 4.7804 17 6 2.0499 -1.0742 5.9843 18 1 2.2966 -2.1255 5.9968 19 6 1.6428 -0.4354 7.1644 20 7 1.1976 0.7921 7.1226 21 14 1.7369 -1.3398 8.7961 22 1 2.2726 -2.7069 8.5743 23 1 2.6343 -0.6011 9.7204 24 1 0.3794 -1.4301 9.3912 25 6 1.8934 -0.9802 3.5477 26 6 1.9790 -0.2700 2.3873 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.4187 1.6866 -1.9750 31 1 2.0507 3.0902 -1.0812 32 1 3.7339 0.6774 -1.8875 33 1 4.4216 3.4516 -0.8088 34 1 4.5817 1.9112 0.0709 35 1 6.2219 1.1117 -1.5874 36 1 6.7573 2.6634 -0.8984 37 1 5.3086 1.0984 -3.8389 38 1 5.2063 2.6406 -4.7219 39 1 2.9734 1.8877 -3.8940 40 1 3.4649 3.4376 -3.1671 41 1 2.8076 2.7769 3.6615 42 1 2.6665 1.5159 5.7493 43 1 0.9163 1.2340 7.9390 44 1 1.6395 -2.0297 3.5220 45 1 1.7919 -0.7573 1.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282410466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:04 Heat of formation + Delta-G solvation = -54.011989 kcal Electronic energy + Delta-G solvation = -27391.440205 eV Core-core repulsion = 23569.033776 eV Total energy + Delta-G solvation = -3822.406429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.94168 -38.92464 -37.23499 -36.91454 -34.88496 -33.73765 -31.80918 -31.03869 -30.13265 -29.52153 -27.65636 -26.34487 -25.47431 -23.53341 -23.17534 -21.49909 -20.87536 -20.02543 -19.72098 -17.60344 -17.33358 -16.40248 -16.30090 -15.97129 -15.50081 -15.39317 -14.89407 -14.69118 -14.44510 -14.37096 -13.79829 -13.56758 -13.47318 -13.07366 -12.84026 -12.70819 -12.35792 -12.15466 -12.07951 -11.80066 -11.69684 -11.39526 -11.30044 -11.24187 -11.07471 -10.91090 -10.59768 -10.49285 -10.37876 -10.27445 -9.84167 -9.63801 -9.41598 -9.29350 -8.91318 -8.58418 -7.63953 -7.43844 -6.91209 -4.59318 2.16012 2.25387 2.92130 2.97965 3.02931 3.09535 3.72841 3.80710 3.85888 4.47143 4.59249 4.68499 4.73262 4.85509 5.02492 5.19284 5.28608 5.32570 5.42433 5.45493 5.47795 5.57254 5.61402 5.64614 5.71370 5.75485 5.81099 5.93201 6.01544 6.08415 6.28476 6.32237 6.49098 6.51164 6.80118 6.87384 6.90068 7.11049 7.16451 7.17414 7.54021 7.66833 7.76210 7.92104 8.06983 8.18003 8.48424 8.68548 8.78808 8.84312 10.00313 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.003005 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.410068 B = 9315.351286 C = 9821.127865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.136 6.136 3 N -0.485 5.485 4 C 0.124 3.876 5 C -0.103 4.103 6 C -0.143 4.143 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.063 3.937 10 C -0.148 4.148 11 C 0.583 3.417 12 O -0.549 6.549 13 C -0.281 4.281 14 C -0.040 4.040 15 C -0.176 4.176 16 C 0.132 3.868 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.071 3.929 20 N -0.784 5.784 21 Si 0.916 3.084 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.238 4.238 26 C -0.060 4.060 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.284 0.716 44 H 0.095 0.905 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -0.300 -14.818 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.139 6.139 3 N -0.266 5.266 4 C 0.003 3.997 5 C -0.122 4.122 6 C -0.181 4.181 7 C -0.016 4.016 8 O -0.305 6.305 9 C -0.014 4.014 10 C -0.187 4.187 11 C 0.382 3.618 12 O -0.430 6.430 13 C -0.285 4.285 14 C -0.059 4.059 15 C -0.195 4.195 16 C 0.129 3.871 17 C -0.477 4.477 18 H 0.101 0.899 19 C -0.148 4.148 20 N -0.408 5.408 21 Si 0.740 3.260 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.258 4.258 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.968 0.462 -14.699 14.739 hybrid contribution -0.761 -0.674 0.894 1.354 sum 0.207 -0.212 -13.805 13.808 Atomic orbital electron populations 1.23279 0.82462 1.03489 1.01268 1.90522 1.19696 1.08146 1.95572 1.50124 1.59863 1.09699 1.06883 1.21633 0.96212 0.97119 0.84782 1.21610 0.95575 1.00604 0.94449 1.22243 0.93829 1.02592 0.99440 1.22647 0.97751 0.97751 0.83452 1.87905 1.59170 1.61958 1.21502 1.22508 0.88231 0.97803 0.92837 1.22191 0.97868 1.02148 0.96466 1.18812 0.75400 0.85109 0.82433 1.90703 1.48789 1.18365 1.85102 1.18880 1.23785 0.94900 0.90955 1.20517 0.95833 0.97926 0.91667 1.21040 1.06137 0.95557 0.96763 1.17876 0.84775 0.92222 0.92268 1.19840 1.38164 0.97390 0.92306 0.89925 1.26064 0.92588 0.94793 1.01388 1.69723 1.28611 1.11855 1.30613 0.86131 0.78871 0.80601 0.80429 1.18247 1.19534 1.19753 1.20856 1.12789 0.99191 0.92941 1.21658 0.94416 0.93209 0.98585 0.93581 0.88022 0.92295 0.90651 0.89244 0.90611 0.90467 0.90209 0.93474 0.88918 0.93400 0.89148 0.90991 0.90836 0.88361 0.86080 0.90476 0.88684 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 10.72 101.05 1.08 0.99 16 2 O -0.14 -2.14 7.63 -11.47 -0.09 -2.23 16 3 N -0.49 -8.14 2.93 -61.31 -0.18 -8.32 16 4 C 0.12 1.66 5.33 -4.04 -0.02 1.64 16 5 C -0.10 -1.29 2.47 -90.43 -0.22 -1.51 16 6 C -0.14 -2.09 4.08 -26.59 -0.11 -2.20 16 7 C 0.06 0.78 6.84 37.20 0.25 1.03 16 8 O -0.39 -5.04 10.77 -35.23 -0.38 -5.42 16 9 C 0.06 0.64 6.84 37.20 0.25 0.89 16 10 C -0.15 -1.47 5.42 -26.60 -0.14 -1.61 16 11 C 0.58 12.03 6.28 -12.42 -0.08 11.95 16 12 O -0.55 -12.11 14.02 5.29 0.07 -12.04 16 13 C -0.28 -6.41 5.89 -104.73 -0.62 -7.02 16 14 C -0.04 -0.97 9.52 -39.61 -0.38 -1.35 16 15 C -0.18 -4.51 8.58 -39.27 -0.34 -4.84 16 16 C 0.13 3.38 5.53 -106.80 -0.59 2.79 16 17 C -0.45 -11.29 9.05 -37.75 -0.34 -11.64 16 18 H 0.08 1.99 7.86 -52.49 -0.41 1.57 16 19 C 0.07 1.70 5.29 -17.31 -0.09 1.61 16 20 N -0.78 -19.43 10.86 55.56 0.60 -18.83 16 21 Si 0.92 17.74 29.57 -169.99 -5.03 12.72 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 26 C -0.06 -1.32 8.70 -39.61 -0.34 -1.66 16 27 H 0.05 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.09 1.28 7.46 -51.93 -0.39 0.89 16 32 H 0.08 0.98 8.14 -51.94 -0.42 0.56 16 33 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 34 H 0.08 1.39 6.15 -51.93 -0.32 1.07 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.34 7.65 -52.49 -0.40 1.93 16 42 H 0.12 3.20 6.31 -52.49 -0.33 2.86 16 43 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.13 2.57 4.22 -55.43 -0.23 2.34 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -28.47 360.81 -8.33 -36.80 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.70 Total: 8.80 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.07 Total: -16.92 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.42 Total: -27.15 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.39 Total: -19.69 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.47 -8.33 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282410466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.213 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds