Wall clock time and date at job start Tue Mar 31 2020 12:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.41598 * 113.99716 * 2 1 4 4 C 1.46496 * 120.00139 * 276.55450 * 3 2 1 5 5 C 1.53002 * 109.47353 * 266.92857 * 4 3 2 6 6 C 1.53184 * 109.53941 * 292.68319 * 5 4 3 7 7 C 1.53086 * 109.16183 * 183.15523 * 6 5 4 8 8 O 1.42900 * 109.41684 * 57.60753 * 7 6 5 9 9 C 1.42902 * 114.09845 * 298.84413 * 8 7 6 10 10 C 1.53086 * 109.41432 * 61.15562 * 9 8 7 11 11 C 1.34781 * 119.99704 * 96.56255 * 3 2 1 12 12 O 1.21589 * 119.99386 * 183.66608 * 11 3 2 13 13 C 1.47641 * 120.00413 * 3.65729 * 11 3 2 14 14 C 1.40012 * 119.89553 * 188.37266 * 13 11 3 15 15 C 1.36310 * 120.10501 * 180.25871 * 14 13 11 16 16 C 1.40890 * 119.89331 * 359.51831 * 15 14 13 17 17 C 1.41108 * 120.10467 * 180.22952 * 16 15 14 18 18 H 1.08000 * 120.00187 * 211.40072 * 17 16 15 19 19 C 1.40230 * 119.99918 * 31.40947 * 17 16 15 20 20 N 1.30647 * 119.99782 * 7.87940 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 187.88096 * 19 17 16 22 22 H 1.48501 * 109.47467 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47006 * 119.99951 * 21 19 17 24 24 H 1.48497 * 109.47446 * 239.99824 * 21 19 17 25 25 C 1.40886 * 119.79112 * 0.50169 * 16 15 14 26 26 C 1.36320 * 119.89151 * 359.73406 * 25 16 15 27 27 H 1.08996 * 109.47097 * 60.00326 * 1 2 3 28 28 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47351 * 300.00281 * 1 2 3 30 30 H 1.09007 * 109.46629 * 26.92514 * 4 3 2 31 31 H 1.09000 * 109.47288 * 146.92149 * 4 3 2 32 32 H 1.08989 * 109.54540 * 52.94770 * 5 4 3 33 33 H 1.09003 * 109.52008 * 303.05977 * 6 5 4 34 34 H 1.08997 * 109.52154 * 63.24312 * 6 5 4 35 35 H 1.09003 * 109.47769 * 297.62246 * 7 6 5 36 36 H 1.09007 * 109.48108 * 177.59510 * 7 6 5 37 37 H 1.09000 * 109.47804 * 301.17367 * 9 8 7 38 38 H 1.09004 * 109.48900 * 181.15056 * 9 8 7 39 39 H 1.09007 * 109.52103 * 182.48412 * 10 9 8 40 40 H 1.09000 * 109.52432 * 62.30237 * 10 9 8 41 41 H 1.07998 * 119.94754 * 359.97438 * 14 13 11 42 42 H 1.07997 * 120.05510 * 179.72402 * 15 14 13 43 43 H 0.97002 * 119.99528 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.05691 * 179.70861 * 25 16 15 45 45 H 1.08003 * 119.94442 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1705 2.0217 -1.2604 5 6 3.5668 1.7526 -1.8252 6 6 4.6202 2.3846 -0.9102 7 6 6.0075 2.1785 -1.5238 8 8 6.0374 2.7497 -2.8333 9 6 5.1060 2.1654 -3.7461 10 6 3.6825 2.3710 -3.2218 11 6 2.4009 1.8549 1.1596 12 8 2.8336 2.9912 1.1683 13 6 2.3090 1.0903 2.4193 14 6 2.5526 1.7277 3.6419 15 6 2.4740 1.0246 4.8070 16 6 2.1372 -0.3432 4.7804 17 6 2.0499 -1.0742 5.9843 18 1 2.2966 -2.1255 5.9968 19 6 1.6428 -0.4354 7.1644 20 7 1.1976 0.7921 7.1226 21 14 1.7369 -1.3398 8.7961 22 1 2.2726 -2.7069 8.5743 23 1 2.6343 -0.6011 9.7204 24 1 0.3794 -1.4301 9.3912 25 6 1.8934 -0.9802 3.5477 26 6 1.9790 -0.2700 2.3873 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.4187 1.6866 -1.9750 31 1 2.0507 3.0902 -1.0812 32 1 3.7339 0.6774 -1.8875 33 1 4.4216 3.4516 -0.8088 34 1 4.5817 1.9112 0.0709 35 1 6.2219 1.1117 -1.5874 36 1 6.7573 2.6634 -0.8984 37 1 5.3086 1.0984 -3.8389 38 1 5.2063 2.6406 -4.7219 39 1 2.9734 1.8877 -3.8940 40 1 3.4649 3.4376 -3.1671 41 1 2.8076 2.7769 3.6615 42 1 2.6665 1.5159 5.7493 43 1 0.9163 1.2340 7.9390 44 1 1.6395 -2.0297 3.5220 45 1 1.7919 -0.7573 1.4418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282410466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:03 Heat of formation + Delta-G solvation = -69.507389 kcal Electronic energy + Delta-G solvation = -27392.112136 eV Core-core repulsion = 23569.033776 eV Total energy + Delta-G solvation = -3823.078360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29606 -40.10875 -38.94978 -38.35954 -36.04141 -35.50450 -33.07190 -32.02953 -31.91588 -31.37683 -28.92285 -27.70676 -26.90923 -24.51890 -24.41387 -23.21470 -22.57048 -21.25461 -21.01829 -19.43492 -18.85763 -17.74474 -17.45457 -17.20913 -16.91924 -16.62593 -16.24147 -16.03218 -15.71691 -15.45451 -15.18603 -15.08644 -14.90081 -14.53128 -14.46301 -13.91751 -13.76035 -13.58916 -13.48439 -13.20047 -13.02829 -12.85152 -12.72069 -12.57177 -12.32288 -12.25883 -12.06964 -11.85819 -11.57753 -11.51423 -11.25487 -11.19652 -11.05589 -10.63770 -10.47792 -9.91480 -9.53171 -9.30996 -8.70803 -6.50422 0.39791 0.94102 1.18769 1.37715 1.40095 1.54222 2.03684 2.17561 2.78881 2.96689 3.18344 3.67745 3.68340 3.77776 3.90157 4.08618 4.24810 4.26052 4.40317 4.41007 4.43632 4.45850 4.47645 4.55225 4.65843 4.72473 4.76665 4.78864 4.80634 4.88539 4.96182 4.98627 5.06188 5.14856 5.21088 5.27722 5.30765 5.36829 5.54738 5.65541 5.82161 5.96162 6.04121 6.25710 6.26323 6.55552 6.59834 6.80024 6.91044 7.23449 8.23693 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.003005 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.410068 B = 9315.351286 C = 9821.127865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.145 6.145 3 N -0.478 5.478 4 C 0.121 3.879 5 C -0.098 4.098 6 C -0.139 4.139 7 C 0.065 3.935 8 O -0.403 6.403 9 C 0.055 3.945 10 C -0.140 4.140 11 C 0.584 3.416 12 O -0.571 6.571 13 C -0.289 4.289 14 C -0.052 4.052 15 C -0.194 4.194 16 C 0.104 3.896 17 C -0.479 4.479 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.818 5.818 21 Si 0.991 3.009 22 H -0.253 1.253 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.249 4.249 26 C -0.051 4.051 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.292 0.708 44 H 0.111 0.889 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -1.863 -17.130 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.148 6.148 3 N -0.256 5.256 4 C 0.002 3.998 5 C -0.117 4.117 6 C -0.177 4.177 7 C -0.012 4.012 8 O -0.322 6.322 9 C -0.021 4.021 10 C -0.178 4.178 11 C 0.381 3.619 12 O -0.454 6.454 13 C -0.293 4.293 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.101 3.899 17 C -0.507 4.507 18 H 0.106 0.894 19 C -0.186 4.186 20 N -0.443 5.443 21 Si 0.811 3.189 22 H -0.176 1.176 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.268 4.268 26 C -0.069 4.069 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.148 -1.110 -17.065 17.101 hybrid contribution -0.551 -0.141 1.439 1.548 sum -0.403 -1.251 -15.625 15.680 Atomic orbital electron populations 1.23536 0.80353 1.05549 1.01485 1.90422 1.21739 1.07101 1.95502 1.49894 1.58855 1.10043 1.06814 1.21907 0.98001 0.96225 0.83676 1.21581 0.93989 1.00638 0.95537 1.22129 0.96042 1.01013 0.98549 1.22556 0.96580 0.98269 0.83759 1.87888 1.60241 1.62614 1.21493 1.22790 0.87586 0.98688 0.93069 1.22160 0.98679 1.01993 0.94958 1.18427 0.75691 0.84720 0.83099 1.90689 1.49685 1.19151 1.85846 1.19228 1.22718 0.95737 0.91639 1.20591 0.96350 0.97824 0.92410 1.20955 1.07804 0.96193 0.96445 1.18210 0.85562 0.92382 0.93702 1.20112 1.39594 0.97835 0.93194 0.89430 1.26974 0.91461 0.95445 1.04729 1.69790 1.29132 1.13364 1.32015 0.85010 0.79115 0.79300 0.75442 1.17628 1.19054 1.18889 1.21105 1.12830 1.00099 0.92761 1.21976 0.92914 0.92593 0.99402 0.90790 0.84994 0.94642 0.86893 0.90311 0.90421 0.92556 0.93636 0.92557 0.89125 0.92329 0.86848 0.87872 0.91207 0.88883 0.87837 0.89734 0.87079 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.27 10.72 113.37 1.22 0.94 16 2 O -0.14 -4.15 7.63 -38.78 -0.30 -4.44 16 3 N -0.48 -15.32 2.93 -466.15 -1.37 -16.69 16 4 C 0.12 2.98 5.33 86.38 0.46 3.44 16 5 C -0.10 -2.25 2.47 -10.67 -0.03 -2.27 16 6 C -0.14 -4.08 4.08 30.68 0.13 -3.96 16 7 C 0.07 1.65 6.84 72.01 0.49 2.14 16 8 O -0.40 -9.90 10.77 -148.98 -1.60 -11.51 16 9 C 0.05 0.94 6.84 72.01 0.49 1.43 16 10 C -0.14 -2.31 5.42 30.68 0.17 -2.14 16 11 C 0.58 24.28 6.28 86.73 0.54 24.83 16 12 O -0.57 -25.97 14.02 -4.00 -0.06 -26.03 16 13 C -0.29 -13.46 5.89 -19.94 -0.12 -13.58 16 14 C -0.05 -2.68 9.52 22.25 0.21 -2.47 16 15 C -0.19 -10.53 8.58 22.47 0.19 -10.34 16 16 C 0.10 5.55 5.53 -21.28 -0.12 5.43 16 17 C -0.48 -24.74 9.05 23.46 0.21 -24.52 16 18 H 0.09 4.27 7.86 -2.91 -0.02 4.25 16 19 C 0.03 1.46 5.29 85.35 0.45 1.92 16 20 N -0.82 -41.90 10.86 21.87 0.24 -41.66 16 21 Si 0.99 36.47 29.57 68.60 2.03 38.50 16 22 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 23 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 C -0.25 -11.76 9.73 22.47 0.22 -11.54 16 26 C -0.05 -2.21 8.70 22.25 0.19 -2.02 16 27 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 28 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 1.95 8.11 -2.38 -0.02 1.93 16 31 H 0.08 2.16 7.46 -2.39 -0.02 2.14 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.85 7.94 -2.39 -0.02 1.83 16 34 H 0.04 1.63 6.15 -2.39 -0.01 1.62 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 4.73 7.65 -2.91 -0.02 4.70 16 42 H 0.10 5.85 6.31 -2.91 -0.02 5.83 16 43 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.16 5.96 4.22 -49.56 -0.21 5.76 16 Total: -1.00 -64.96 360.81 4.45 -60.51 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.79 Total: 34.03 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 4.72 Total: -32.71 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -1.13 Total: -58.35 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.96 Total: -41.98 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -64.96 4.45 -60.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282410466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.994 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds