Wall clock time and date at job start Tue Mar 31 2020 12:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99525 * 2 1 4 4 O 1.20821 * 120.00460 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99443 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47271 * 60.00618 * 5 3 2 7 7 N 1.46905 * 109.46958 * 179.97438 * 5 3 2 8 8 C 1.46901 * 110.99795 * 275.00329 * 7 5 3 9 9 C 1.53003 * 109.46720 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46964 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47365 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99304 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00136 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99536 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00132 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47005 * 89.99803 * 15 13 11 17 17 H 1.48497 * 109.46833 * 209.99765 * 15 13 11 18 18 H 1.48497 * 109.46673 * 329.99632 * 15 13 11 19 19 C 1.50696 * 109.47112 * 299.99997 * 5 3 2 20 20 C 1.38293 * 120.11375 * 280.02119 * 19 5 3 21 21 C 1.37934 * 120.34618 * 179.83089 * 20 19 5 22 22 C 1.39282 * 120.24319 * 359.96010 * 21 20 19 23 23 C 1.38884 * 118.87810 * 0.37225 * 22 21 20 24 24 C 1.37741 * 120.78134 * 359.48106 * 23 22 21 25 25 C 1.51638 * 107.04617 * 179.44718 * 23 22 21 26 26 C 1.54706 * 101.95770 * 344.59228 * 25 23 22 27 27 O 1.36143 * 129.88949 * 180.99829 * 22 21 20 28 28 H 1.09009 * 109.47156 * 59.99960 * 1 2 3 29 29 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47522 * 300.00392 * 1 2 3 31 31 H 1.00893 * 111.00172 * 151.04560 * 7 5 3 32 32 H 1.08997 * 109.46653 * 299.99406 * 8 7 5 33 33 H 1.09000 * 109.47474 * 59.99855 * 8 7 5 34 34 H 1.08995 * 109.46987 * 299.99700 * 9 8 7 35 35 H 1.09000 * 109.47221 * 59.99755 * 9 8 7 36 36 H 1.08995 * 109.47439 * 299.99932 * 10 9 8 37 37 H 1.09000 * 109.46936 * 60.00089 * 10 9 8 38 38 H 0.97013 * 119.99578 * 180.02562 * 14 13 11 39 39 H 1.07991 * 119.82735 * 359.81614 * 20 19 5 40 40 H 1.08002 * 119.88046 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.01235 * 180.36358 * 24 23 22 42 42 H 1.09002 * 110.93994 * 102.77103 * 25 23 22 43 43 H 1.08997 * 110.93769 * 226.42283 * 25 23 22 44 44 H 1.09003 * 110.74785 * 143.62371 * 26 25 23 45 45 H 1.08994 * 110.75591 * 266.97977 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8892 7 7 3.9828 2.6837 -0.0002 8 6 4.0179 3.2215 -1.3667 9 6 4.4543 4.6874 -1.3267 10 6 4.4915 5.2475 -2.7501 11 6 4.9208 6.6915 -2.7107 12 1 5.1450 7.1625 -1.7650 13 6 5.0282 7.4109 -3.8819 14 7 5.4023 8.6713 -3.8474 15 14 4.6410 6.5960 -5.5176 16 1 3.2006 6.7749 -5.8310 17 1 5.4615 7.2186 -6.5873 18 1 4.9532 5.1466 -5.4345 19 6 4.1046 0.5920 1.2314 20 6 4.1046 1.2516 2.4469 21 6 4.5930 0.6299 3.5771 22 6 5.0900 -0.6692 3.5039 23 6 5.0911 -1.3187 2.2763 24 6 4.6002 -0.6970 1.1494 25 6 5.6943 -2.6918 2.5004 26 6 6.3642 -2.5255 3.8849 27 8 5.5957 -1.4671 4.4842 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.8755 2.7971 0.4561 32 1 4.7256 2.6475 -1.9649 33 1 3.0251 3.1504 -1.8109 34 1 3.7464 5.2611 -0.7286 35 1 5.4471 4.7590 -0.8824 36 1 5.1997 4.6738 -3.3479 37 1 3.4989 5.1759 -3.1947 38 1 5.4775 9.1776 -4.6715 39 1 3.7205 2.2589 2.5114 40 1 4.5898 1.1522 4.5224 41 1 4.6017 -1.2159 0.2022 42 1 4.9191 -3.4574 2.5321 43 1 6.4349 -2.9216 1.7344 44 1 6.2793 -3.4427 4.4677 45 1 7.4080 -2.2311 3.7761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289317259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:12 Heat of formation + Delta-G solvation = -90.174009 kcal Electronic energy + Delta-G solvation = -26258.156775 eV Core-core repulsion = 22434.182243 eV Total energy + Delta-G solvation = -3823.974532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45861 -40.51833 -38.33080 -36.74982 -35.81959 -33.73210 -32.99925 -32.02994 -30.39118 -29.50106 -28.37429 -27.05421 -25.22435 -23.86189 -22.59458 -22.06804 -21.95917 -20.52508 -19.94058 -17.89010 -17.68733 -16.92972 -16.80350 -16.66343 -16.51576 -16.31113 -15.51747 -15.11594 -14.52282 -14.36372 -14.15252 -13.81065 -13.63778 -13.52357 -13.37897 -13.22731 -13.00559 -12.83563 -12.59932 -12.30485 -12.14479 -12.04602 -11.67167 -11.59488 -11.26307 -11.05793 -10.99378 -10.84150 -10.74865 -10.40781 -9.93500 -9.70348 -9.59007 -9.16698 -9.13754 -8.50094 -8.46405 -8.37174 -6.00106 -3.97551 0.93624 1.05049 2.24951 2.56230 2.91102 3.33672 3.37326 3.40376 3.43826 3.97679 4.12648 4.31419 4.42596 4.48749 4.54131 4.61614 4.78402 4.85602 4.98183 4.98883 5.06135 5.10664 5.13505 5.28552 5.33848 5.34105 5.38501 5.40231 5.62178 5.69209 5.76498 5.90047 6.06785 6.15546 6.21775 6.28452 6.34403 6.50542 6.58646 6.85314 6.93668 7.02709 7.36703 7.37211 7.51012 7.82653 7.84525 8.59229 9.05699 9.62579 11.13490 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002710 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.912479 B =10328.324706 C =11321.729673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.474 6.474 5 C 0.148 3.852 6 H 0.088 0.912 7 N -0.667 5.667 8 C 0.056 3.944 9 C -0.097 4.097 10 C -0.013 4.013 11 C -0.517 4.517 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.123 4.123 20 C -0.057 4.057 21 C -0.138 4.138 22 C 0.111 3.889 23 C -0.179 4.179 24 C -0.045 4.045 25 C -0.109 4.109 26 C 0.051 3.949 27 O -0.306 6.306 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.356 0.644 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -28.077 13.841 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.357 6.357 5 C 0.037 3.963 6 H 0.105 0.895 7 N -0.301 5.301 8 C -0.072 4.072 9 C -0.135 4.135 10 C -0.051 4.051 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.124 4.124 20 C -0.075 4.075 21 C -0.157 4.157 22 C 0.066 3.934 23 C -0.180 4.180 24 C -0.063 4.063 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.220 6.220 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.963 -27.357 14.096 30.917 hybrid contribution 0.387 -0.762 -1.444 1.678 sum -2.577 -28.119 12.652 30.941 Atomic orbital electron populations 1.23219 0.76609 1.03327 1.02585 1.86486 1.23126 1.33748 1.84599 1.23620 0.91556 0.81416 0.73204 1.90699 1.66206 1.36078 1.42747 1.19691 0.88092 0.91534 0.96996 0.89454 1.60069 1.36350 1.12726 1.20961 1.22296 1.00854 0.97528 0.86484 1.21416 1.00464 0.91631 0.99990 1.19539 0.96232 0.96949 0.92332 1.21145 1.45256 0.94141 0.94985 0.90968 1.25040 0.94739 0.94702 0.99135 1.69925 1.48348 1.08336 1.27796 0.86767 0.78530 0.80143 0.83767 1.20313 1.21463 1.19104 1.19304 1.03882 0.95013 0.94172 1.20911 0.95806 1.00322 0.90492 1.20279 1.04017 0.91407 0.99966 1.19642 0.95043 0.91547 0.87171 1.20648 1.06579 0.96434 0.94314 1.20108 0.95503 0.93241 0.97464 1.21777 1.00478 0.94705 0.97629 1.23866 0.95327 0.90092 0.93107 1.86857 1.65030 1.39078 1.31006 0.91936 0.88372 0.91988 0.82273 0.95293 0.91104 0.91625 0.92866 0.96850 0.97027 0.92809 0.83718 0.85042 0.85393 0.89124 0.88962 0.87601 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.36 10.48 -39.26 -0.41 -4.78 16 3 C 0.46 6.49 7.12 36.01 0.26 6.75 16 4 O -0.47 -8.25 15.67 -18.75 -0.29 -8.54 16 5 C 0.15 1.81 2.73 -70.01 -0.19 1.62 16 6 H 0.09 0.94 7.67 -51.93 -0.40 0.55 16 7 N -0.67 -9.38 5.23 -109.18 -0.57 -9.95 16 8 C 0.06 0.93 5.38 -3.82 -0.02 0.91 16 9 C -0.10 -1.96 5.41 -26.73 -0.14 -2.10 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 12 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 15 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 C -0.12 -1.33 4.64 -104.56 -0.49 -1.82 16 20 C -0.06 -0.62 8.99 -39.67 -0.36 -0.98 16 21 C -0.14 -1.44 10.06 -39.30 -0.40 -1.83 16 22 C 0.11 1.17 7.04 -38.95 -0.27 0.90 16 23 C -0.18 -1.67 6.27 -104.10 -0.65 -2.32 16 24 C -0.04 -0.42 9.66 -39.72 -0.38 -0.81 16 25 C -0.11 -0.68 7.11 -26.52 -0.19 -0.87 16 26 C 0.05 0.31 8.01 38.06 0.30 0.62 16 27 O -0.31 -3.07 11.11 -20.19 -0.22 -3.29 16 28 H 0.06 0.60 8.13 -51.92 -0.42 0.17 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 31 H 0.36 4.48 7.99 -39.30 -0.31 4.17 16 32 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.07 1.26 7.62 -51.93 -0.40 0.87 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 38 H 0.26 7.70 8.31 -40.81 -0.34 7.36 16 39 H 0.15 1.61 7.71 -52.49 -0.40 1.20 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.13 0.99 8.04 -52.49 -0.42 0.57 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -34.91 376.32 -8.67 -43.58 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.93 Total: 0.02 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.01 Total: -12.54 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.20 Total: -37.62 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.93 Total: -16.61 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.91 -8.67 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289317259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.592 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds