Wall clock time and date at job start Tue Mar 31 2020 12:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 119.99800 * 2 1 4 4 N 1.46496 * 109.47089 * 126.18113 * 3 2 1 5 5 C 1.46503 * 119.99667 * 277.31711 * 4 3 2 6 6 C 1.50699 * 109.46909 * 269.99752 * 5 4 3 7 7 H 1.07999 * 120.00249 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99851 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00055 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00038 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47338 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47043 * 120.00439 * 10 8 6 13 13 H 1.48497 * 109.47302 * 240.00381 * 10 8 6 14 14 C 1.34773 * 120.00024 * 97.31617 * 4 3 2 15 15 O 1.21562 * 119.99818 * 185.61844 * 14 4 3 16 16 C 1.47857 * 120.00160 * 5.62134 * 14 4 3 17 17 C 1.39595 * 120.12026 * 131.24478 * 16 14 4 18 18 C 1.37967 * 119.96659 * 180.02562 * 17 16 14 19 19 C 1.38283 * 120.20674 * 359.71748 * 18 17 16 20 20 C 1.38809 * 120.23757 * 0.55812 * 19 18 17 21 21 O 1.35910 * 119.98600 * 179.72109 * 20 19 18 22 22 C 1.42899 * 116.99971 * 359.72471 * 21 20 19 23 23 C 1.53001 * 109.47329 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.47130 * 64.99587 * 23 22 21 25 25 C 1.42896 * 114.00110 * 179.97438 * 24 23 22 26 26 C 1.38495 * 120.02715 * 359.44269 * 20 19 18 27 27 H 1.08000 * 120.00502 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00063 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00479 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46738 * 6.17849 * 3 2 1 31 31 H 1.09004 * 109.47175 * 246.17881 * 3 2 1 32 32 H 1.08999 * 109.47522 * 30.00445 * 5 4 3 33 33 H 1.09006 * 109.47099 * 150.00300 * 5 4 3 34 34 H 0.96992 * 120.00007 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.01666 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.89573 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.88133 * 180.27692 * 19 18 17 38 38 H 1.08994 * 109.47195 * 299.99914 * 22 21 20 39 39 H 1.08999 * 109.47266 * 59.99797 * 22 21 20 40 40 H 1.08992 * 109.47555 * 185.00152 * 23 22 21 41 41 H 1.09007 * 109.46667 * 305.00344 * 23 22 21 42 42 H 1.08996 * 109.47403 * 300.00351 * 25 24 23 43 43 H 1.09007 * 109.47066 * 60.00645 * 25 24 23 44 44 H 1.09005 * 109.47214 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.09926 * 180.25378 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0137 1.3204 1.1148 5 6 2.5605 1.6881 2.4586 6 6 2.7028 3.1764 2.6470 7 1 3.0915 3.7875 1.8458 8 6 2.3367 3.7581 3.8423 9 7 1.8638 3.0140 4.8182 10 14 2.5124 5.6031 4.0756 11 1 3.0636 6.2085 2.8368 12 1 1.1813 6.1944 4.3651 13 1 3.4314 5.8733 5.2104 14 6 4.3048 0.9962 0.9042 15 8 5.0707 0.9093 1.8442 16 6 4.7896 0.7464 -0.4700 17 6 5.9559 1.3643 -0.9246 18 6 6.4052 1.1293 -2.2077 19 6 5.7068 0.2783 -3.0445 20 6 4.5430 -0.3362 -2.6033 21 8 3.8575 -1.1673 -3.4319 22 6 4.3890 -1.3578 -4.7446 23 6 3.4885 -2.3173 -5.5252 24 8 2.2069 -1.7158 -5.7198 25 6 1.2848 -2.5335 -6.4430 26 6 4.0831 -0.1073 -1.3171 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3602 2.1306 0.1106 31 1 2.6046 1.4123 -0.9401 32 1 1.5149 1.4047 2.5797 33 1 3.1660 1.1683 3.2012 34 1 1.6067 3.4231 5.6591 35 1 6.5058 2.0267 -0.2724 36 1 7.3079 1.6077 -2.5581 37 1 6.0657 0.0946 -4.0464 38 1 4.4324 -0.3992 -5.2616 39 1 5.3923 -1.7777 -4.6730 40 1 3.9398 -2.5323 -6.4938 41 1 3.3731 -3.2447 -4.9642 42 1 1.6906 -2.7525 -7.4306 43 1 1.1236 -3.4657 -5.9014 44 1 0.3369 -2.0059 -6.5489 45 1 3.1799 -0.5881 -0.9712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292521975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:45 Heat of formation + Delta-G solvation = -57.934529 kcal Electronic energy + Delta-G solvation = -26660.167344 eV Core-core repulsion = 22837.590821 eV Total energy + Delta-G solvation = -3822.576523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41502 -39.17255 -38.08415 -36.81723 -35.71172 -33.18485 -32.07768 -31.54098 -30.95635 -29.35571 -27.53270 -26.68723 -25.57984 -24.30301 -23.09054 -22.53292 -21.57576 -20.10534 -19.07351 -17.70727 -17.17205 -16.58229 -16.44392 -16.31438 -15.93705 -15.65462 -15.55274 -15.37097 -14.86292 -14.51691 -14.37334 -14.09824 -13.44754 -13.37263 -12.91053 -12.79918 -12.73002 -12.48673 -12.11439 -11.99322 -11.67234 -11.65386 -11.53786 -11.24013 -11.10400 -11.00954 -10.94553 -10.71752 -10.57849 -10.16760 -10.08110 -9.62118 -9.18163 -9.07316 -8.72941 -8.40864 -8.19603 -7.67419 -6.01857 -4.06602 1.12620 1.48483 2.54060 2.95840 3.31863 3.33590 3.36582 3.39757 3.44478 3.81302 4.12131 4.46677 4.49232 4.70331 4.78253 4.80725 4.88433 4.95308 5.00995 5.04469 5.11795 5.22379 5.31964 5.34160 5.35194 5.38521 5.42996 5.53452 5.57843 5.75322 5.98116 6.10531 6.23227 6.29344 6.41174 6.56521 6.66732 6.75094 6.88191 6.98856 7.13924 7.34800 7.47929 7.56422 7.94825 8.25591 8.39036 8.89599 9.05840 9.58241 11.06354 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.003204 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.979629 B = 8737.228930 C = 9769.195036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.169 4.169 3 C 0.128 3.872 4 N -0.583 5.583 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.548 3.452 15 O -0.532 6.532 16 C -0.072 4.072 17 C -0.110 4.110 18 C -0.086 4.086 19 C -0.201 4.201 20 C 0.122 3.878 21 O -0.305 6.305 22 C 0.061 3.939 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.031 3.969 26 C -0.133 4.133 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -10.737 -23.887 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.188 4.188 3 C 0.004 3.996 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.334 3.666 15 O -0.410 6.410 16 C -0.076 4.076 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.220 4.220 20 C 0.077 3.923 21 O -0.219 6.219 22 C -0.015 4.015 23 C -0.014 4.014 24 O -0.301 6.301 25 C -0.066 4.066 26 C -0.152 4.152 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.359 -10.678 -23.059 25.521 hybrid contribution 0.219 0.738 -0.130 0.781 sum 2.578 -9.940 -23.190 25.361 Atomic orbital electron populations 1.23793 0.95741 1.01769 1.00242 1.23389 0.96386 0.98795 1.00191 1.20785 0.92830 0.95372 0.90595 1.48165 1.06766 1.64812 1.11537 1.19334 0.95580 0.95687 0.76727 1.21479 1.42926 0.92521 0.99658 0.92317 1.24933 0.95084 0.98435 0.95621 1.69948 1.43373 1.35348 1.04581 0.86445 0.77659 0.85119 0.78225 1.19759 1.20970 1.20879 1.18172 0.82838 0.78118 0.87448 1.90768 1.55068 1.51977 1.43209 1.20052 0.95569 0.97462 0.94488 1.21127 0.95407 1.00368 0.95950 1.20847 0.99259 0.97040 0.93266 1.21284 0.96998 1.02535 1.01144 1.18788 0.91363 0.91672 0.90488 1.86136 1.50387 1.61946 1.23435 1.22813 0.96413 1.00260 0.81977 1.22572 0.84603 0.95961 0.98288 1.87991 1.22720 1.43002 1.76404 1.22765 0.93481 0.95503 0.94809 1.20981 1.01815 1.01250 0.91121 0.88241 0.88709 0.87522 0.89634 0.89787 0.94638 0.93610 0.92773 0.85018 0.85394 0.85611 0.91062 0.90497 0.91218 0.92022 0.94178 0.93885 0.89386 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 14.32 29.02 0.42 -2.11 16 2 C -0.17 -2.67 8.56 -36.02 -0.31 -2.97 16 3 C 0.13 2.29 5.34 -5.19 -0.03 2.26 16 4 N -0.58 -13.01 2.45 -177.54 -0.43 -13.45 16 5 C 0.25 6.59 5.21 -5.19 -0.03 6.56 16 6 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.55 12.27 7.23 -12.33 -0.09 12.18 16 15 O -0.53 -14.06 16.58 5.31 0.09 -13.97 16 16 C -0.07 -1.29 4.96 -104.99 -0.52 -1.81 16 17 C -0.11 -1.72 9.72 -39.17 -0.38 -2.10 16 18 C -0.09 -1.06 10.03 -39.66 -0.40 -1.46 16 19 C -0.20 -2.33 9.03 -39.35 -0.36 -2.69 16 20 C 0.12 1.65 6.68 -39.28 -0.26 1.39 16 21 O -0.31 -3.83 10.10 -24.31 -0.25 -4.07 16 22 C 0.06 0.51 5.12 37.16 0.19 0.70 16 23 C 0.06 0.46 6.32 37.16 0.23 0.70 16 24 O -0.38 -3.82 10.67 -40.08 -0.43 -4.25 16 25 C 0.03 0.20 11.01 101.05 1.11 1.32 16 26 C -0.13 -2.07 7.42 -39.02 -0.29 -2.36 16 27 H 0.10 1.38 7.85 -52.49 -0.41 0.96 16 28 H 0.09 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.11 1.63 6.51 -52.49 -0.34 1.28 16 30 H 0.09 1.56 7.78 -51.93 -0.40 1.16 16 31 H 0.08 1.38 5.27 -51.93 -0.27 1.11 16 32 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 38 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.08 0.48 7.64 -51.93 -0.40 0.09 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.15 2.24 4.14 -52.48 -0.22 2.02 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -34.98 379.30 -7.22 -42.19 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.50 Total: 1.08 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.13 Total: -4.19 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.30 Total: -39.55 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.59 Total: -22.29 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.98 -7.22 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292521975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.743 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds