Wall clock time and date at job start Tue Mar 31 2020 12:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 119.99800 * 2 1 4 4 N 1.46496 * 109.47089 * 126.18113 * 3 2 1 5 5 C 1.46503 * 119.99667 * 277.31711 * 4 3 2 6 6 C 1.50699 * 109.46909 * 269.99752 * 5 4 3 7 7 H 1.07999 * 120.00249 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99851 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00055 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00038 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47338 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47043 * 120.00439 * 10 8 6 13 13 H 1.48497 * 109.47302 * 240.00381 * 10 8 6 14 14 C 1.34773 * 120.00024 * 97.31617 * 4 3 2 15 15 O 1.21562 * 119.99818 * 185.61844 * 14 4 3 16 16 C 1.47857 * 120.00160 * 5.62134 * 14 4 3 17 17 C 1.39595 * 120.12026 * 131.24478 * 16 14 4 18 18 C 1.37967 * 119.96659 * 180.02562 * 17 16 14 19 19 C 1.38283 * 120.20674 * 359.71748 * 18 17 16 20 20 C 1.38809 * 120.23757 * 0.55812 * 19 18 17 21 21 O 1.35910 * 119.98600 * 179.72109 * 20 19 18 22 22 C 1.42899 * 116.99971 * 359.72471 * 21 20 19 23 23 C 1.53001 * 109.47329 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.47130 * 64.99587 * 23 22 21 25 25 C 1.42896 * 114.00110 * 179.97438 * 24 23 22 26 26 C 1.38495 * 120.02715 * 359.44269 * 20 19 18 27 27 H 1.08000 * 120.00502 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00063 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00479 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46738 * 6.17849 * 3 2 1 31 31 H 1.09004 * 109.47175 * 246.17881 * 3 2 1 32 32 H 1.08999 * 109.47522 * 30.00445 * 5 4 3 33 33 H 1.09006 * 109.47099 * 150.00300 * 5 4 3 34 34 H 0.96992 * 120.00007 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.01666 * 359.97438 * 17 16 14 36 36 H 1.08006 * 119.89573 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.88133 * 180.27692 * 19 18 17 38 38 H 1.08994 * 109.47195 * 299.99914 * 22 21 20 39 39 H 1.08999 * 109.47266 * 59.99797 * 22 21 20 40 40 H 1.08992 * 109.47555 * 185.00152 * 23 22 21 41 41 H 1.09007 * 109.46667 * 305.00344 * 23 22 21 42 42 H 1.08996 * 109.47403 * 300.00351 * 25 24 23 43 43 H 1.09007 * 109.47066 * 60.00645 * 25 24 23 44 44 H 1.09005 * 109.47214 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.09926 * 180.25378 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0137 1.3204 1.1148 5 6 2.5605 1.6881 2.4586 6 6 2.7028 3.1764 2.6470 7 1 3.0915 3.7875 1.8458 8 6 2.3367 3.7581 3.8423 9 7 1.8638 3.0140 4.8182 10 14 2.5124 5.6031 4.0756 11 1 3.0636 6.2085 2.8368 12 1 1.1813 6.1944 4.3651 13 1 3.4314 5.8733 5.2104 14 6 4.3048 0.9962 0.9042 15 8 5.0707 0.9093 1.8442 16 6 4.7896 0.7464 -0.4700 17 6 5.9559 1.3643 -0.9246 18 6 6.4052 1.1293 -2.2077 19 6 5.7068 0.2783 -3.0445 20 6 4.5430 -0.3362 -2.6033 21 8 3.8575 -1.1673 -3.4319 22 6 4.3890 -1.3578 -4.7446 23 6 3.4885 -2.3173 -5.5252 24 8 2.2069 -1.7158 -5.7198 25 6 1.2848 -2.5335 -6.4430 26 6 4.0831 -0.1073 -1.3171 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3602 2.1306 0.1106 31 1 2.6046 1.4123 -0.9401 32 1 1.5149 1.4047 2.5797 33 1 3.1660 1.1683 3.2012 34 1 1.6067 3.4231 5.6591 35 1 6.5058 2.0267 -0.2724 36 1 7.3079 1.6077 -2.5581 37 1 6.0657 0.0946 -4.0464 38 1 4.4324 -0.3992 -5.2616 39 1 5.3923 -1.7777 -4.6730 40 1 3.9398 -2.5323 -6.4938 41 1 3.3731 -3.2447 -4.9642 42 1 1.6906 -2.7525 -7.4306 43 1 1.1236 -3.4657 -5.9014 44 1 0.3369 -2.0059 -6.5489 45 1 3.1799 -0.5881 -0.9712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292521975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:44 Heat of formation + Delta-G solvation = -80.673307 kcal Electronic energy + Delta-G solvation = -26661.153371 eV Core-core repulsion = 22837.590821 eV Total energy + Delta-G solvation = -3823.562550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62532 -40.50190 -38.85065 -37.86314 -37.39388 -35.17383 -33.75773 -32.53675 -32.01399 -30.29124 -29.49617 -27.24320 -27.07722 -25.81518 -24.39541 -23.58563 -22.82899 -21.43387 -20.34894 -19.05709 -18.64607 -17.84389 -17.70836 -17.51069 -17.12671 -16.99207 -16.41713 -16.28329 -16.15401 -15.99042 -15.75845 -15.47736 -14.63493 -14.59434 -14.40258 -14.18033 -13.92533 -13.67163 -13.34024 -13.18915 -13.03589 -12.90690 -12.84404 -12.65515 -12.60370 -12.32593 -12.29174 -12.22973 -11.88161 -11.77519 -11.66327 -10.85131 -10.66539 -10.61972 -10.41930 -9.93846 -9.57386 -9.23198 -8.24304 -6.39530 -0.04903 0.39863 1.27835 1.36088 1.38306 1.50625 1.72088 2.11273 2.33378 2.43834 2.76328 2.85466 3.05385 3.53305 3.78352 3.94072 4.04478 4.09348 4.15800 4.17166 4.20746 4.27254 4.38359 4.39568 4.47814 4.54784 4.56094 4.60577 4.75080 4.78147 4.86260 4.90803 4.98776 5.00578 5.16826 5.19769 5.32489 5.44242 5.47311 5.64042 5.65852 5.71852 5.89294 6.02703 6.22822 6.44239 6.59374 6.69535 7.18715 7.34969 8.83744 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.003204 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.979629 B = 8737.228930 C = 9769.195036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.190 4.190 3 C 0.130 3.870 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.971 3.029 11 H -0.267 1.267 12 H -0.268 1.268 13 H -0.280 1.280 14 C 0.542 3.458 15 O -0.589 6.589 16 C -0.096 4.096 17 C -0.128 4.128 18 C -0.071 4.071 19 C -0.182 4.182 20 C 0.126 3.874 21 O -0.322 6.322 22 C 0.049 3.951 23 C 0.058 3.942 24 O -0.417 6.417 25 C 0.026 3.974 26 C -0.142 4.142 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.026 0.974 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -10.558 -27.538 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.316 5.316 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.795 3.205 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.205 1.205 14 C 0.331 3.669 15 O -0.471 6.471 16 C -0.099 4.099 17 C -0.147 4.147 18 C -0.089 4.089 19 C -0.200 4.200 20 C 0.080 3.920 21 O -0.236 6.236 22 C -0.026 4.026 23 C -0.018 4.018 24 O -0.336 6.336 25 C -0.070 4.070 26 C -0.161 4.161 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.044 0.956 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.768 -10.518 -26.769 28.894 hybrid contribution 0.047 0.567 0.872 1.041 sum 2.815 -9.951 -25.897 27.885 Atomic orbital electron populations 1.24060 0.95143 1.03185 0.97254 1.23253 0.96965 0.97781 1.02862 1.20932 0.92135 0.96516 0.89578 1.48143 1.07948 1.64476 1.11010 1.18779 0.93919 0.94606 0.78462 1.21702 1.43392 0.93289 1.00042 0.92839 1.25879 0.94336 1.03737 0.95065 1.70065 1.43809 1.37626 1.05134 0.85322 0.78282 0.78714 0.78226 1.19077 1.19265 1.20534 1.18970 0.82143 0.76658 0.89156 1.90707 1.56354 1.54524 1.45551 1.19622 0.97504 1.00493 0.92263 1.21204 0.94906 1.00842 0.97736 1.21209 1.00047 0.96292 0.91333 1.21744 0.95336 1.00306 1.02623 1.18783 0.91804 0.91607 0.89786 1.86136 1.50997 1.61382 1.25067 1.23240 0.97983 1.01334 0.79995 1.22764 0.83903 0.95414 0.99701 1.87936 1.24068 1.44512 1.77130 1.22897 0.93259 0.95290 0.95534 1.20852 1.01776 1.01284 0.92224 0.87846 0.86184 0.87193 0.90318 0.88232 0.95637 0.98196 0.92284 0.86326 0.81516 0.81306 0.90169 0.87667 0.88022 0.92145 0.92293 0.93552 0.89302 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 14.32 67.79 0.97 -3.42 16 2 C -0.19 -6.11 8.56 25.66 0.22 -5.89 16 3 C 0.13 4.86 5.34 85.64 0.46 5.31 16 4 N -0.59 -27.93 2.45 -833.89 -2.04 -29.97 16 5 C 0.26 15.10 5.21 85.63 0.45 15.55 16 6 C -0.55 -32.77 9.39 25.60 0.24 -32.53 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.53 5.46 84.66 0.46 0.99 16 9 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 10 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.54 25.99 7.23 86.79 0.63 26.61 16 15 O -0.59 -33.73 16.58 -3.91 -0.06 -33.80 16 16 C -0.10 -3.53 4.96 -20.10 -0.10 -3.63 16 17 C -0.13 -4.02 9.72 22.53 0.22 -3.80 16 18 C -0.07 -1.53 10.03 22.22 0.22 -1.31 16 19 C -0.18 -3.48 9.03 22.42 0.20 -3.28 16 20 C 0.13 3.12 6.68 22.47 0.15 3.27 16 21 O -0.32 -7.27 10.10 -87.90 -0.89 -8.15 16 22 C 0.05 0.64 5.12 71.98 0.37 1.01 16 23 C 0.06 0.69 6.32 71.98 0.45 1.14 16 24 O -0.42 -7.44 10.67 -144.34 -1.54 -8.98 16 25 C 0.03 0.29 11.01 113.37 1.25 1.54 16 26 C -0.14 -4.45 7.42 22.63 0.17 -4.28 16 27 H 0.10 2.77 7.85 -2.91 -0.02 2.75 16 28 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.11 3.46 6.51 -2.91 -0.02 3.44 16 30 H 0.08 2.98 7.78 -2.39 -0.02 2.96 16 31 H 0.10 3.37 5.27 -2.38 -0.01 3.35 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 33 H 0.00 0.00 7.35 -2.38 -0.02 -0.02 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.17 1.80 6.28 -2.91 -0.02 1.79 16 38 H 0.08 0.92 7.67 -2.39 -0.02 0.91 16 39 H 0.11 0.78 7.64 -2.39 -0.02 0.76 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.14 4.41 4.14 -2.91 -0.01 4.40 16 Total: -1.00 -81.46 379.30 5.12 -76.34 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.98 Total: 16.40 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.36 Total: -2.70 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -1.75 Total: -87.06 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.49 Total: -50.93 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -81.46 5.12 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292521975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.335 kcal (2) G-P(sol) polarization free energy of solvation -81.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds