Wall clock time and date at job start Tue Mar 31 2020 12:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46883 * 261.14068 * 3 2 1 5 5 C 1.37098 * 120.00133 * 88.26230 * 4 3 2 6 6 H 1.08001 * 119.99907 * 167.02012 * 5 4 3 7 7 C 1.38943 * 119.99994 * 347.29749 * 5 4 3 8 8 N 1.31413 * 119.99882 * 333.34416 * 7 5 4 9 9 Si 1.86797 * 120.00286 * 153.34855 * 7 5 4 10 10 H 1.48501 * 109.47083 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47767 * 119.99566 * 9 7 5 12 12 H 1.48504 * 109.46992 * 240.00119 * 9 7 5 13 13 C 1.34779 * 119.99946 * 268.25951 * 4 3 2 14 14 O 1.21296 * 120.00061 * 4.46368 * 13 4 3 15 15 C 1.50703 * 119.99986 * 184.46769 * 13 4 3 16 16 C 1.52997 * 109.46853 * 301.14363 * 15 13 4 17 17 C 1.53002 * 109.47071 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46981 * 0.02562 * 17 16 15 19 19 C 1.50703 * 109.47199 * 180.02562 * 18 17 16 20 20 O 1.20825 * 119.99790 * 239.99950 * 19 18 17 21 21 O 1.34229 * 120.00057 * 59.99721 * 19 18 17 22 22 C 1.45203 * 116.99856 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47257 * 60.00277 * 18 17 16 24 24 C 1.53002 * 109.46899 * 299.99773 * 23 18 17 25 25 C 1.53006 * 109.47385 * 300.00084 * 18 17 16 26 26 C 1.52997 * 109.46850 * 59.99810 * 25 18 17 27 27 H 4.40632 * 5.51449 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46966 * 141.14272 * 3 2 1 29 29 H 1.09001 * 109.47119 * 21.13906 * 3 2 1 30 30 H 0.97003 * 119.99676 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47237 * 299.99789 * 16 15 13 32 32 H 1.09000 * 109.47429 * 60.00298 * 16 15 13 33 33 H 1.09001 * 109.47327 * 240.00379 * 17 16 15 34 34 H 1.08992 * 109.47479 * 120.00094 * 17 16 15 35 35 H 1.09004 * 109.46631 * 60.00266 * 22 21 19 36 36 H 1.09002 * 109.46869 * 180.02562 * 22 21 19 37 37 H 1.08996 * 109.46983 * 300.00431 * 22 21 19 38 38 H 1.08993 * 109.47516 * 180.02562 * 23 18 17 39 39 H 1.08996 * 109.47505 * 59.99458 * 23 18 17 40 40 H 1.09001 * 109.47534 * 239.99862 * 24 23 18 41 41 H 1.09005 * 109.47057 * 119.99979 * 24 23 18 42 42 H 1.08993 * 109.47407 * 179.97438 * 25 18 17 43 43 H 1.09001 * 109.47174 * 300.00306 * 25 18 17 44 44 H 1.09001 * 109.47252 * 239.99969 * 26 25 18 45 45 H 1.09001 * 109.47234 * 120.00163 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.2136 1.3647 5 6 3.3292 -0.8575 2.1980 6 1 3.8798 -0.7323 3.1186 7 6 2.8233 -2.1054 1.8553 8 7 1.7679 -2.1956 1.0776 9 14 3.6435 -3.6549 2.5001 10 1 4.8046 -3.2841 3.3482 11 1 2.6687 -4.4319 3.3070 12 1 4.1096 -4.4805 1.3571 13 6 3.3916 1.4625 1.8011 14 8 3.1430 2.4156 1.0933 15 6 3.9885 1.6748 3.1685 16 6 3.0629 1.0733 4.2280 17 6 3.6686 1.2894 5.6163 18 6 4.9976 2.0355 5.4824 19 6 5.5946 2.2478 6.8498 20 8 5.8055 3.3683 7.2495 21 8 5.8918 1.1921 7.6236 22 6 6.4636 1.4716 8.9287 23 6 4.7567 3.3908 4.8146 24 6 4.1510 3.1747 3.4263 25 6 5.9621 1.2103 4.6280 26 6 5.3563 0.9942 3.2398 27 1 -1.0500 0.0002 -0.0001 28 1 3.0089 0.8011 -0.6448 29 1 3.0097 -0.9577 -0.3706 30 1 1.4146 -3.0668 0.8386 31 1 2.0886 1.5593 4.1774 32 1 2.9462 0.0052 4.0444 33 1 3.8399 0.3239 6.0923 34 1 2.9819 1.8776 6.2248 35 1 5.7649 2.0734 9.5101 36 1 6.6563 0.5335 9.4494 37 1 7.3989 2.0176 8.8062 38 1 5.7035 3.9221 4.7188 39 1 4.0696 3.9787 5.4232 40 1 4.8101 3.6037 2.6715 41 1 3.1763 3.6601 3.3755 42 1 6.9087 1.7420 4.5323 43 1 6.1338 0.2447 5.1038 44 1 5.2404 -0.0740 3.0561 45 1 6.0155 1.4231 2.4850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293689839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:46 Heat of formation + Delta-G solvation = -48.628230 kcal Electronic energy + Delta-G solvation = -28824.699805 eV Core-core repulsion = 25002.526833 eV Total energy + Delta-G solvation = -3822.172971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39187 -39.85776 -37.83137 -36.40363 -35.19035 -32.33229 -31.75497 -31.14489 -30.61247 -30.39468 -27.81485 -26.46271 -25.04411 -23.33795 -22.47552 -22.33573 -20.79352 -19.32624 -18.16164 -17.68250 -17.04507 -16.94321 -16.41369 -16.35197 -15.34590 -15.25239 -14.78538 -14.39489 -14.37434 -13.85381 -13.72990 -13.27101 -12.79274 -12.67582 -12.44795 -12.29701 -12.15031 -12.01024 -11.81205 -11.73973 -11.71387 -11.57794 -11.48678 -11.28586 -11.11416 -10.94875 -10.82463 -10.48118 -10.40600 -10.07159 -9.95403 -9.52070 -9.30294 -9.25605 -9.03719 -8.68679 -8.26995 -7.95561 -6.40473 -3.93699 2.24436 2.73308 3.04335 3.18742 3.20195 3.71330 3.93450 4.12123 4.35083 4.58151 4.74411 4.75966 4.89931 4.99101 5.00436 5.06504 5.24167 5.37570 5.53541 5.58997 5.61731 5.63899 5.66978 5.69135 5.73391 5.74532 5.83008 5.98195 6.24976 6.29792 6.33270 6.39108 6.47961 6.53849 6.60759 6.66175 6.72514 6.78499 6.80574 6.89807 7.02239 7.21105 7.41258 7.61984 7.78161 8.25110 8.99122 9.07636 9.42053 9.83079 10.54143 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.004996 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.643413 B = 5603.133608 C = 6790.974419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.093 4.093 3 C 0.242 3.758 4 N -0.435 5.435 5 C -0.360 4.360 6 H 0.126 0.874 7 C 0.041 3.959 8 N -0.836 5.836 9 Si 0.902 3.098 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.470 3.530 14 O -0.603 6.603 15 C -0.050 4.050 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.044 4.044 19 C 0.472 3.528 20 O -0.512 6.512 21 O -0.354 6.354 22 C 0.034 3.966 23 C -0.094 4.094 24 C -0.089 4.089 25 C -0.101 4.101 26 C -0.118 4.118 27 H 0.194 0.806 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.269 0.731 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 1.860 9.296 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.095 4.095 3 C 0.119 3.881 4 N -0.152 5.152 5 C -0.486 4.486 6 H 0.143 0.857 7 C -0.166 4.166 8 N -0.471 5.471 9 Si 0.728 3.272 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.205 1.205 13 C 0.259 3.741 14 O -0.489 6.489 15 C -0.053 4.053 16 C -0.160 4.160 17 C -0.139 4.139 18 C -0.045 4.045 19 C 0.316 3.684 20 O -0.400 6.400 21 O -0.270 6.270 22 C -0.060 4.060 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.155 4.155 27 H 0.212 0.788 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.695 2.469 8.997 11.483 hybrid contribution 0.042 -0.899 0.668 1.121 sum 6.737 1.569 9.665 11.885 Atomic orbital electron populations 1.24083 0.95222 1.07272 1.02793 1.22942 0.94172 0.94644 0.97708 1.18012 0.84535 1.00720 0.84818 1.43687 1.55731 1.05195 1.10620 1.20055 1.36006 0.86480 1.06087 0.85709 1.25256 0.94587 0.99408 0.97390 1.70200 1.16859 1.25083 1.34975 0.86265 0.79859 0.82156 0.78883 1.18892 1.20887 1.20547 1.19956 0.83408 0.82704 0.88068 1.90539 1.58983 1.40990 1.58418 1.20285 0.95652 0.95415 0.93912 1.21970 0.97430 1.05647 0.91002 1.21599 0.93275 0.99898 0.99157 1.20573 0.97307 0.99273 0.87346 1.24054 0.74410 0.82562 0.87417 1.90624 1.50175 1.25274 1.73904 1.86558 1.73906 1.37877 1.28690 1.23235 0.98324 1.02833 0.81635 1.21480 1.01642 0.93504 0.96494 1.21332 1.01529 0.95051 0.94735 1.21571 0.96794 0.99497 0.96020 1.21807 0.94661 1.03983 0.95086 0.78840 0.91307 0.88795 0.92013 0.92116 0.86587 0.90675 0.92075 0.92114 0.88240 0.92132 0.91454 0.91447 0.91327 0.91364 0.91937 0.90598 0.87878 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.22 19.16 29.55 0.57 -5.65 16 2 C -0.09 -2.25 11.07 -37.12 -0.41 -2.66 16 3 C 0.24 5.65 5.18 -6.83 -0.04 5.61 16 4 N -0.44 -10.10 2.59 -117.93 -0.30 -10.41 16 5 C -0.36 -8.08 6.69 -14.94 -0.10 -8.18 16 6 H 0.13 2.58 3.09 -52.49 -0.16 2.42 16 7 C 0.04 0.94 4.80 -17.47 -0.08 0.86 16 8 N -0.84 -20.42 9.19 55.50 0.51 -19.91 16 9 Si 0.90 17.85 29.63 -169.99 -5.04 12.81 16 10 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.47 10.65 6.47 -10.98 -0.07 10.58 16 14 O -0.60 -15.35 15.58 5.54 0.09 -15.26 16 15 C -0.05 -0.91 0.49 -155.66 -0.08 -0.98 16 16 C -0.12 -2.16 4.61 -26.73 -0.12 -2.28 16 17 C -0.10 -1.49 4.92 -26.73 -0.13 -1.62 16 18 C -0.04 -0.63 0.71 -155.66 -0.11 -0.74 16 19 C 0.47 6.86 6.55 36.01 0.24 7.09 16 20 O -0.51 -8.42 15.73 -18.75 -0.29 -8.71 16 21 O -0.35 -4.57 10.37 -39.25 -0.41 -4.98 16 22 C 0.03 0.32 10.56 101.05 1.07 1.39 16 23 C -0.09 -1.40 4.28 -26.73 -0.11 -1.51 16 24 C -0.09 -1.51 4.28 -26.70 -0.11 -1.63 16 25 C -0.10 -1.41 4.92 -26.73 -0.13 -1.54 16 26 C -0.12 -1.92 4.70 -26.76 -0.13 -2.05 16 27 H 0.19 3.64 7.80 -54.09 -0.42 3.22 16 28 H 0.07 1.56 7.43 -51.93 -0.39 1.18 16 29 H 0.09 2.18 6.79 -51.93 -0.35 1.83 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.12 2.22 4.53 -51.93 -0.24 1.99 16 33 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.10 1.79 4.98 -51.93 -0.26 1.53 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -28.67 352.33 -6.33 -35.00 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.43 Total: 9.47 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.24 Total: -3.32 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.21 Total: -30.32 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.62 Total: -28.95 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.04 Total: 12.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.67 -6.33 -35.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293689839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.630 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds