Wall clock time and date at job start Tue Mar 31 2020 12:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46883 * 261.14068 * 3 2 1 5 5 C 1.37098 * 120.00133 * 88.26230 * 4 3 2 6 6 H 1.08001 * 119.99907 * 167.02012 * 5 4 3 7 7 C 1.38943 * 119.99994 * 347.29749 * 5 4 3 8 8 N 1.31413 * 119.99882 * 333.34416 * 7 5 4 9 9 Si 1.86797 * 120.00286 * 153.34855 * 7 5 4 10 10 H 1.48501 * 109.47083 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47767 * 119.99566 * 9 7 5 12 12 H 1.48504 * 109.46992 * 240.00119 * 9 7 5 13 13 C 1.34779 * 119.99946 * 268.25951 * 4 3 2 14 14 O 1.21296 * 120.00061 * 4.46368 * 13 4 3 15 15 C 1.50703 * 119.99986 * 184.46769 * 13 4 3 16 16 C 1.52997 * 109.46853 * 301.14363 * 15 13 4 17 17 C 1.53002 * 109.47071 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46981 * 0.02562 * 17 16 15 19 19 C 1.50703 * 109.47199 * 180.02562 * 18 17 16 20 20 O 1.20825 * 119.99790 * 239.99950 * 19 18 17 21 21 O 1.34229 * 120.00057 * 59.99721 * 19 18 17 22 22 C 1.45203 * 116.99856 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47257 * 60.00277 * 18 17 16 24 24 C 1.53002 * 109.46899 * 299.99773 * 23 18 17 25 25 C 1.53006 * 109.47385 * 300.00084 * 18 17 16 26 26 C 1.52997 * 109.46850 * 59.99810 * 25 18 17 27 27 H 4.40632 * 5.51449 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46966 * 141.14272 * 3 2 1 29 29 H 1.09001 * 109.47119 * 21.13906 * 3 2 1 30 30 H 0.97003 * 119.99676 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47237 * 299.99789 * 16 15 13 32 32 H 1.09000 * 109.47429 * 60.00298 * 16 15 13 33 33 H 1.09001 * 109.47327 * 240.00379 * 17 16 15 34 34 H 1.08992 * 109.47479 * 120.00094 * 17 16 15 35 35 H 1.09004 * 109.46631 * 60.00266 * 22 21 19 36 36 H 1.09002 * 109.46869 * 180.02562 * 22 21 19 37 37 H 1.08996 * 109.46983 * 300.00431 * 22 21 19 38 38 H 1.08993 * 109.47516 * 180.02562 * 23 18 17 39 39 H 1.08996 * 109.47505 * 59.99458 * 23 18 17 40 40 H 1.09001 * 109.47534 * 239.99862 * 24 23 18 41 41 H 1.09005 * 109.47057 * 119.99979 * 24 23 18 42 42 H 1.08993 * 109.47407 * 179.97438 * 25 18 17 43 43 H 1.09001 * 109.47174 * 300.00306 * 25 18 17 44 44 H 1.09001 * 109.47252 * 239.99969 * 26 25 18 45 45 H 1.09001 * 109.47234 * 120.00163 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.2136 1.3647 5 6 3.3292 -0.8575 2.1980 6 1 3.8798 -0.7323 3.1186 7 6 2.8233 -2.1054 1.8553 8 7 1.7679 -2.1956 1.0776 9 14 3.6435 -3.6549 2.5001 10 1 4.8046 -3.2841 3.3482 11 1 2.6687 -4.4319 3.3070 12 1 4.1096 -4.4805 1.3571 13 6 3.3916 1.4625 1.8011 14 8 3.1430 2.4156 1.0933 15 6 3.9885 1.6748 3.1685 16 6 3.0629 1.0733 4.2280 17 6 3.6686 1.2894 5.6163 18 6 4.9976 2.0355 5.4824 19 6 5.5946 2.2478 6.8498 20 8 5.8055 3.3683 7.2495 21 8 5.8918 1.1921 7.6236 22 6 6.4636 1.4716 8.9287 23 6 4.7567 3.3908 4.8146 24 6 4.1510 3.1747 3.4263 25 6 5.9621 1.2103 4.6280 26 6 5.3563 0.9942 3.2398 27 1 -1.0500 0.0002 -0.0001 28 1 3.0089 0.8011 -0.6448 29 1 3.0097 -0.9577 -0.3706 30 1 1.4146 -3.0668 0.8386 31 1 2.0886 1.5593 4.1774 32 1 2.9462 0.0052 4.0444 33 1 3.8399 0.3239 6.0923 34 1 2.9819 1.8776 6.2248 35 1 5.7649 2.0734 9.5101 36 1 6.6563 0.5335 9.4494 37 1 7.3989 2.0176 8.8062 38 1 5.7035 3.9221 4.7188 39 1 4.0696 3.9787 5.4232 40 1 4.8101 3.6037 2.6715 41 1 3.1763 3.6601 3.3755 42 1 6.9087 1.7420 4.5323 43 1 6.1338 0.2447 5.1038 44 1 5.2404 -0.0740 3.0561 45 1 6.0155 1.4231 2.4850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293689839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:45 Heat of formation + Delta-G solvation = -62.602836 kcal Electronic energy + Delta-G solvation = -28825.305789 eV Core-core repulsion = 25002.526833 eV Total energy + Delta-G solvation = -3822.778956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66960 -41.16014 -39.37763 -37.47654 -37.01799 -33.92663 -33.51657 -32.68015 -31.87265 -31.79177 -28.72472 -28.15320 -26.76266 -24.64246 -23.73246 -23.65708 -22.04620 -20.95326 -19.84509 -18.86341 -18.59649 -18.34775 -17.78254 -17.43145 -16.72233 -16.56399 -16.28291 -16.10474 -15.75598 -15.59133 -15.12544 -14.26107 -14.16094 -14.12697 -13.94339 -13.84388 -13.64535 -13.35457 -13.15881 -13.04798 -12.96367 -12.95032 -12.72487 -12.69349 -12.68214 -12.33845 -11.99581 -11.91303 -11.74508 -11.39382 -11.23336 -11.09925 -11.02126 -10.83739 -10.54351 -10.48393 -10.03350 -9.76647 -8.16326 -5.73984 1.14491 1.45316 1.57408 1.67300 1.75320 1.95168 2.19098 2.39953 2.50661 3.11534 3.20615 3.48084 3.55203 3.63117 3.99736 4.02392 4.14818 4.25988 4.31592 4.35029 4.37749 4.38746 4.39820 4.43747 4.47622 4.51712 4.53805 4.74302 4.79589 4.91697 5.05394 5.10038 5.11273 5.17270 5.25208 5.31551 5.33505 5.39261 5.40239 5.44021 5.46268 5.54076 5.73868 5.86283 6.46935 6.72766 7.20596 7.23694 7.63635 8.04561 8.78920 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.004996 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.643413 B = 5603.133608 C = 6790.974419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.134 4.134 3 C 0.242 3.758 4 N -0.441 5.441 5 C -0.364 4.364 6 H 0.145 0.855 7 C 0.001 3.999 8 N -0.867 5.867 9 Si 0.966 3.034 10 H -0.244 1.244 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.455 3.545 14 O -0.640 6.640 15 C -0.047 4.047 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.043 4.043 19 C 0.480 3.520 20 O -0.534 6.534 21 O -0.356 6.356 22 C 0.026 3.974 23 C -0.086 4.086 24 C -0.082 4.082 25 C -0.095 4.095 26 C -0.112 4.112 27 H 0.228 0.772 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.266 0.734 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.241 0.976 11.773 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.158 5.158 5 C -0.490 4.490 6 H 0.161 0.839 7 C -0.204 4.204 8 N -0.503 5.503 9 Si 0.790 3.210 10 H -0.167 1.167 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.246 3.754 14 O -0.529 6.529 15 C -0.050 4.050 16 C -0.153 4.153 17 C -0.132 4.132 18 C -0.044 4.044 19 C 0.325 3.675 20 O -0.423 6.423 21 O -0.272 6.272 22 C -0.067 4.067 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.149 4.149 27 H 0.245 0.755 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.111 1.570 11.495 14.156 hybrid contribution -0.467 -0.604 -0.133 0.775 sum 7.644 0.967 11.362 13.728 Atomic orbital electron populations 1.24946 0.96251 1.05852 1.01391 1.23374 0.95045 0.96010 0.99116 1.17942 0.84671 1.00122 0.85344 1.43925 1.55379 1.05837 1.10611 1.20513 1.35712 0.86214 1.06556 0.83863 1.26020 0.94739 1.01873 0.97751 1.70318 1.18158 1.25292 1.36575 0.85282 0.79240 0.78327 0.78108 1.16721 1.21610 1.21307 1.20811 0.83090 0.82023 0.89484 1.90500 1.60513 1.41968 1.59893 1.20300 0.96758 0.96576 0.91335 1.21827 0.96690 1.04091 0.92708 1.21537 0.93479 1.01081 0.97097 1.20498 0.97293 0.98666 0.87933 1.23792 0.73981 0.82511 0.87263 1.90626 1.51211 1.26152 1.74347 1.86532 1.73704 1.37053 1.29902 1.23567 0.98209 1.04810 0.80126 1.21385 1.01831 0.94279 0.94842 1.21243 1.00646 0.93970 0.96194 1.21548 0.96990 1.00563 0.94107 1.21725 0.93330 1.02909 0.96974 0.75547 0.91786 0.89332 0.92404 0.93984 0.88095 0.89027 0.91193 0.92046 0.85100 0.91860 0.90628 0.91268 0.92094 0.93125 0.90347 0.88942 0.88756 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.06 19.16 74.32 1.42 -10.64 16 2 C -0.13 -6.63 11.07 31.12 0.34 -6.29 16 3 C 0.24 11.73 5.18 84.57 0.44 12.17 16 4 N -0.44 -20.93 2.59 -645.42 -1.67 -22.60 16 5 C -0.36 -16.28 6.69 84.04 0.56 -15.71 16 6 H 0.14 5.76 3.09 -2.91 -0.01 5.75 16 7 C 0.00 0.03 4.80 84.92 0.41 0.43 16 8 N -0.87 -42.82 9.19 21.66 0.20 -42.62 16 9 Si 0.97 35.91 29.63 68.60 2.03 37.94 16 10 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 11 H -0.29 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.29 -10.95 7.11 99.48 0.71 -10.24 16 13 C 0.46 21.16 6.47 87.66 0.57 21.73 16 14 O -0.64 -33.80 15.58 -3.08 -0.05 -33.84 16 15 C -0.05 -1.70 0.49 -52.93 -0.03 -1.73 16 16 C -0.12 -3.98 4.61 30.59 0.14 -3.84 16 17 C -0.09 -2.54 4.92 30.60 0.15 -2.39 16 18 C -0.04 -1.12 0.71 -52.92 -0.04 -1.16 16 19 C 0.48 12.45 6.55 71.24 0.47 12.92 16 20 O -0.53 -16.15 15.73 21.97 0.35 -15.81 16 21 O -0.36 -7.86 10.37 -51.41 -0.53 -8.39 16 22 C 0.03 0.40 10.56 113.37 1.20 1.60 16 23 C -0.09 -2.43 4.28 30.59 0.13 -2.29 16 24 C -0.08 -2.81 4.28 30.61 0.13 -2.68 16 25 C -0.09 -2.35 4.92 30.60 0.15 -2.20 16 26 C -0.11 -3.48 4.70 30.58 0.14 -3.34 16 27 H 0.23 8.24 7.80 -4.42 -0.03 8.21 16 28 H 0.06 3.07 7.43 -2.39 -0.02 3.05 16 29 H 0.09 4.29 6.79 -2.39 -0.02 4.28 16 30 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 3.79 4.53 -2.39 -0.01 3.78 16 33 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 38 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 40 H 0.06 2.14 8.09 -2.39 -0.02 2.13 16 41 H 0.05 1.87 8.11 -2.38 -0.02 1.85 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 44 H 0.09 3.11 4.98 -2.39 -0.01 3.10 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -62.17 352.33 7.52 -54.66 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 1.00 Total: 34.08 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.19 Total: -3.41 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -1.47 Total: -65.22 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -0.24 Total: -58.04 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -62.17 7.52 -54.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293689839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.946 kcal (2) G-P(sol) polarization free energy of solvation -62.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds