Wall clock time and date at job start Tue Mar 31 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99442 * 2 1 4 4 N 1.46505 * 109.46785 * 125.00149 * 3 2 1 5 5 C 1.46492 * 119.99821 * 274.96366 * 4 3 2 6 6 C 1.50706 * 109.47293 * 270.00229 * 5 4 3 7 7 H 1.08000 * 119.99847 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99857 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99508 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47106 * 90.00185 * 10 8 6 12 12 H 1.48507 * 109.46830 * 210.00170 * 10 8 6 13 13 H 1.48503 * 109.47457 * 329.99950 * 10 8 6 14 14 C 1.34771 * 120.00060 * 94.97016 * 4 3 2 15 15 O 1.21593 * 120.00254 * 185.55519 * 14 4 3 16 16 C 1.47536 * 120.00151 * 5.55172 * 14 4 3 17 17 C 1.39707 * 120.19393 * 55.03382 * 16 14 4 18 18 C 1.37782 * 119.91108 * 180.02562 * 17 16 14 19 19 C 1.38545 * 120.30309 * 359.97438 * 18 17 16 20 20 C 1.38064 * 120.38902 * 0.02812 * 19 18 17 21 21 C 1.38711 * 120.07928 * 359.97438 * 20 19 18 22 22 O 1.35657 * 120.14419 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00394 * 359.97297 * 22 21 20 24 24 C 1.52995 * 109.47460 * 180.02562 * 23 22 21 25 25 O 1.42905 * 109.46991 * 65.00306 * 24 23 22 26 26 C 1.42898 * 114.00306 * 180.02562 * 25 24 23 27 27 H 1.07999 * 119.99622 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00302 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00302 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47402 * 4.99713 * 3 2 1 31 31 H 1.09005 * 109.46864 * 244.99479 * 3 2 1 32 32 H 1.09000 * 109.47643 * 30.00400 * 5 4 3 33 33 H 1.09003 * 109.47467 * 150.00446 * 5 4 3 34 34 H 0.97005 * 120.00131 * 179.97438 * 9 8 6 35 35 H 1.07996 * 120.04258 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.85493 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.81187 * 179.74579 * 19 18 17 38 38 H 1.07997 * 119.95789 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47336 * 300.00456 * 23 22 21 40 40 H 1.09009 * 109.47045 * 60.00196 * 23 22 21 41 41 H 1.09005 * 109.47453 * 184.99820 * 24 23 22 42 42 H 1.08998 * 109.47386 * 305.00839 * 24 23 22 43 43 H 1.08993 * 109.47329 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46840 * 299.99874 * 26 25 24 45 45 H 1.08992 * 109.47100 * 59.99590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5285 1.7629 2.4521 6 6 2.7146 3.2521 2.5890 7 1 3.1367 3.8208 1.7737 8 6 2.3449 3.8887 3.7549 9 7 1.8304 3.1963 4.7475 10 14 2.5748 5.7347 3.9243 11 1 1.3527 6.4315 3.4490 12 1 2.8159 6.0748 5.3496 13 1 3.7389 6.1655 3.1090 14 6 4.2774 0.9604 0.9573 15 8 5.0238 0.8855 1.9143 16 6 4.7771 0.6444 -0.3944 17 6 4.6462 1.5759 -1.4274 18 6 5.1145 1.2745 -2.6877 19 6 5.7156 0.0512 -2.9360 20 6 5.8513 -0.8785 -1.9244 21 6 5.3856 -0.5918 -0.6497 22 8 5.5187 -1.5042 0.3454 23 6 6.1487 -2.7422 0.0105 24 6 6.2078 -3.6363 1.2507 25 8 4.8808 -3.9837 1.6511 26 6 4.8230 -4.8215 2.8073 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.4725 1.5169 2.5635 33 1 3.1039 1.2524 3.2244 34 1 1.5707 3.6441 5.5679 35 1 4.1787 2.5309 -1.2383 36 1 5.0132 1.9954 -3.4854 37 1 6.0761 -0.1784 -3.9279 38 1 6.3206 -1.8301 -2.1259 39 1 5.5756 -3.2421 -0.7703 40 1 7.1602 -2.5500 -0.3478 41 1 6.7664 -4.5432 1.0186 42 1 6.7035 -3.1016 2.0609 43 1 3.7822 -5.0400 3.0460 44 1 5.3529 -5.7528 2.6079 45 1 5.2899 -4.3110 3.6495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293756830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:49 Heat of formation + Delta-G solvation = -59.375494 kcal Electronic energy + Delta-G solvation = -27365.448690 eV Core-core repulsion = 23542.809682 eV Total energy + Delta-G solvation = -3822.639008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.39307 -38.72764 -37.83790 -36.95654 -35.46948 -33.09131 -32.04597 -31.39008 -30.83728 -29.37825 -27.43022 -26.43654 -25.43359 -23.92881 -23.62977 -21.94717 -21.60640 -19.80023 -19.05261 -17.89063 -16.93448 -16.65726 -16.43721 -16.10727 -15.72047 -15.59409 -15.15170 -14.89426 -14.81690 -14.49336 -14.28870 -14.08925 -13.61385 -13.14345 -12.83209 -12.63748 -12.59618 -12.34835 -12.02717 -11.88647 -11.68997 -11.42033 -11.38597 -11.19913 -11.01976 -10.95928 -10.89490 -10.78347 -10.51778 -10.13210 -9.80335 -9.56794 -9.13712 -8.93292 -8.68081 -8.36869 -8.11083 -7.54453 -5.97457 -4.02271 1.19148 1.47543 2.61498 3.15931 3.33871 3.40153 3.43235 3.48285 3.60869 3.88695 4.15092 4.50269 4.65652 4.87004 4.89727 4.92081 5.05264 5.09149 5.14479 5.23774 5.30639 5.32482 5.36046 5.37799 5.44338 5.52752 5.59729 5.62886 5.69061 5.79989 5.92557 6.14662 6.25778 6.32417 6.37465 6.50096 6.77865 6.96859 7.00855 7.07206 7.21029 7.46993 7.57723 7.66797 7.99932 8.31201 8.52291 8.97275 9.19908 9.62444 11.10495 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004360 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.495117 B = 6420.261551 C = 7362.470765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.128 3.872 4 N -0.587 5.587 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.559 3.441 15 O -0.526 6.526 16 C -0.144 4.144 17 C -0.053 4.053 18 C -0.164 4.164 19 C -0.071 4.071 20 C -0.218 4.218 21 C 0.169 3.831 22 O -0.286 6.286 23 C 0.060 3.940 24 C 0.062 3.938 25 O -0.382 6.382 26 C 0.032 3.968 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.038 0.962 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -13.471 -15.279 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C 0.005 3.995 4 N -0.318 5.318 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.345 3.655 15 O -0.403 6.403 16 C -0.148 4.148 17 C -0.071 4.071 18 C -0.183 4.183 19 C -0.089 4.089 20 C -0.237 4.237 21 C 0.122 3.878 22 O -0.198 6.198 23 C -0.016 4.016 24 C -0.014 4.014 25 O -0.301 6.301 26 C -0.064 4.064 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.001 -13.410 -14.412 20.580 hybrid contribution 0.362 0.710 0.140 0.809 sum 6.362 -12.700 -14.271 20.136 Atomic orbital electron populations 1.23760 0.95778 1.01548 1.01496 1.23409 0.96272 0.99153 0.99021 1.20782 0.93101 0.95262 0.90372 1.48094 1.07780 1.63886 1.12049 1.19268 0.95229 0.94751 0.77850 1.21454 1.41658 0.92727 1.00629 0.92459 1.24925 0.95155 0.98458 0.95515 1.69943 1.42508 1.35713 1.05105 0.86519 0.78395 0.85284 0.77347 1.20667 1.21137 1.19889 1.17850 0.82677 0.77721 0.87254 1.90755 1.56015 1.52161 1.41369 1.19597 1.05283 0.93715 0.96192 1.21171 0.96184 0.98373 0.91392 1.20942 1.02598 0.97750 0.96970 1.20971 0.96519 0.93089 0.98301 1.21131 1.08035 1.01862 0.92687 1.18927 0.93254 0.88552 0.87099 1.86287 1.74766 1.24596 1.34146 1.22862 0.97702 0.83419 0.97610 1.22549 0.85538 0.96738 0.96608 1.87977 1.26204 1.69475 1.46413 1.22750 1.02988 0.92903 0.87809 0.88933 0.88396 0.87876 0.89763 0.90012 0.94904 0.93758 0.92787 0.84548 0.85548 0.85804 0.85386 0.91202 0.90486 0.91320 0.91713 0.89451 0.94350 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.02 0.42 -2.38 16 2 C -0.16 -2.67 9.84 -36.02 -0.35 -3.03 16 3 C 0.13 2.33 5.67 -5.19 -0.03 2.30 16 4 N -0.59 -13.52 2.44 -177.66 -0.43 -13.95 16 5 C 0.25 6.84 5.22 -5.20 -0.03 6.81 16 6 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 10 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.56 13.09 6.78 -12.47 -0.08 13.01 16 15 O -0.53 -14.66 16.35 3.11 0.05 -14.61 16 16 C -0.14 -2.66 4.91 -104.85 -0.51 -3.17 16 17 C -0.05 -0.79 7.48 -39.20 -0.29 -1.09 16 18 C -0.16 -1.94 10.02 -39.64 -0.40 -2.34 16 19 C -0.07 -0.77 10.03 -39.53 -0.40 -1.17 16 20 C -0.22 -2.70 9.03 -39.47 -0.36 -3.06 16 21 C 0.17 2.79 6.69 -38.69 -0.26 2.53 16 22 O -0.29 -4.99 9.33 -30.96 -0.29 -5.27 16 23 C 0.06 0.70 5.12 37.16 0.19 0.89 16 24 C 0.06 0.71 6.32 37.16 0.23 0.95 16 25 O -0.38 -5.41 10.67 -40.08 -0.43 -5.83 16 26 C 0.03 0.34 11.01 101.05 1.11 1.45 16 27 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 31 H 0.08 1.29 4.42 -51.93 -0.23 1.06 16 32 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.39 7.35 -51.93 -0.38 1.00 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.14 1.99 7.58 -52.49 -0.40 1.59 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 39 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 40 H 0.08 0.70 7.66 -51.92 -0.40 0.30 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -36.68 383.92 -7.50 -44.17 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.72 Total: 1.17 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.18 Total: -2.19 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.30 Total: -40.39 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.67 Total: -25.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.68 -7.50 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293756830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.203 kcal (2) G-P(sol) polarization free energy of solvation -36.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds