Wall clock time and date at job start Tue Mar 31 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99442 * 2 1 4 4 N 1.46505 * 109.46785 * 125.00149 * 3 2 1 5 5 C 1.46492 * 119.99821 * 274.96366 * 4 3 2 6 6 C 1.50706 * 109.47293 * 270.00229 * 5 4 3 7 7 H 1.08000 * 119.99847 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99857 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99508 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47106 * 90.00185 * 10 8 6 12 12 H 1.48507 * 109.46830 * 210.00170 * 10 8 6 13 13 H 1.48503 * 109.47457 * 329.99950 * 10 8 6 14 14 C 1.34771 * 120.00060 * 94.97016 * 4 3 2 15 15 O 1.21593 * 120.00254 * 185.55519 * 14 4 3 16 16 C 1.47536 * 120.00151 * 5.55172 * 14 4 3 17 17 C 1.39707 * 120.19393 * 55.03382 * 16 14 4 18 18 C 1.37782 * 119.91108 * 180.02562 * 17 16 14 19 19 C 1.38545 * 120.30309 * 359.97438 * 18 17 16 20 20 C 1.38064 * 120.38902 * 0.02812 * 19 18 17 21 21 C 1.38711 * 120.07928 * 359.97438 * 20 19 18 22 22 O 1.35657 * 120.14419 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00394 * 359.97297 * 22 21 20 24 24 C 1.52995 * 109.47460 * 180.02562 * 23 22 21 25 25 O 1.42905 * 109.46991 * 65.00306 * 24 23 22 26 26 C 1.42898 * 114.00306 * 180.02562 * 25 24 23 27 27 H 1.07999 * 119.99622 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00302 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00302 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47402 * 4.99713 * 3 2 1 31 31 H 1.09005 * 109.46864 * 244.99479 * 3 2 1 32 32 H 1.09000 * 109.47643 * 30.00400 * 5 4 3 33 33 H 1.09003 * 109.47467 * 150.00446 * 5 4 3 34 34 H 0.97005 * 120.00131 * 179.97438 * 9 8 6 35 35 H 1.07996 * 120.04258 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.85493 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.81187 * 179.74579 * 19 18 17 38 38 H 1.07997 * 119.95789 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47336 * 300.00456 * 23 22 21 40 40 H 1.09009 * 109.47045 * 60.00196 * 23 22 21 41 41 H 1.09005 * 109.47453 * 184.99820 * 24 23 22 42 42 H 1.08998 * 109.47386 * 305.00839 * 24 23 22 43 43 H 1.08993 * 109.47329 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.46840 * 299.99874 * 26 25 24 45 45 H 1.08992 * 109.47100 * 59.99590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5285 1.7629 2.4521 6 6 2.7146 3.2521 2.5890 7 1 3.1367 3.8208 1.7737 8 6 2.3449 3.8887 3.7549 9 7 1.8304 3.1963 4.7475 10 14 2.5748 5.7347 3.9243 11 1 1.3527 6.4315 3.4490 12 1 2.8159 6.0748 5.3496 13 1 3.7389 6.1655 3.1090 14 6 4.2774 0.9604 0.9573 15 8 5.0238 0.8855 1.9143 16 6 4.7771 0.6444 -0.3944 17 6 4.6462 1.5759 -1.4274 18 6 5.1145 1.2745 -2.6877 19 6 5.7156 0.0512 -2.9360 20 6 5.8513 -0.8785 -1.9244 21 6 5.3856 -0.5918 -0.6497 22 8 5.5187 -1.5042 0.3454 23 6 6.1487 -2.7422 0.0105 24 6 6.2078 -3.6363 1.2507 25 8 4.8808 -3.9837 1.6511 26 6 4.8230 -4.8215 2.8073 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.4725 1.5169 2.5635 33 1 3.1039 1.2524 3.2244 34 1 1.5707 3.6441 5.5679 35 1 4.1787 2.5309 -1.2383 36 1 5.0132 1.9954 -3.4854 37 1 6.0761 -0.1784 -3.9279 38 1 6.3206 -1.8301 -2.1259 39 1 5.5756 -3.2421 -0.7703 40 1 7.1602 -2.5500 -0.3478 41 1 6.7664 -4.5432 1.0186 42 1 6.7035 -3.1016 2.0609 43 1 3.7822 -5.0400 3.0460 44 1 5.3529 -5.7528 2.6079 45 1 5.2899 -4.3110 3.6495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293756830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:49 Heat of formation + Delta-G solvation = -84.050402 kcal Electronic energy + Delta-G solvation = -27366.518674 eV Core-core repulsion = 23542.809682 eV Total energy + Delta-G solvation = -3823.708992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64001 -40.20238 -38.92892 -38.04915 -37.20006 -35.13260 -33.72726 -32.56809 -31.88658 -30.45604 -29.40605 -27.32415 -27.00117 -25.62432 -24.72892 -23.50093 -22.59716 -21.22923 -20.47516 -19.07806 -18.63588 -18.11652 -17.88790 -17.50208 -17.12215 -16.65506 -16.43833 -16.14860 -16.07473 -15.90291 -15.66086 -15.51480 -14.92632 -14.46168 -14.31388 -14.16182 -13.99478 -13.66309 -13.35830 -13.22651 -13.00786 -12.89474 -12.83561 -12.58158 -12.49880 -12.35746 -12.27264 -12.23562 -12.03833 -11.82639 -11.69308 -10.73461 -10.69304 -10.65244 -10.41297 -9.89281 -9.47773 -9.18100 -8.22629 -6.38739 0.08372 0.44270 1.28051 1.35764 1.39667 1.50185 1.88470 2.18430 2.33060 2.47861 2.75536 2.80806 3.06334 3.63499 3.78950 3.94621 4.04429 4.06119 4.11643 4.21442 4.22798 4.27745 4.39099 4.41037 4.45330 4.45988 4.47523 4.58573 4.69126 4.77868 4.78783 4.87023 4.99775 5.02357 5.18747 5.27899 5.38649 5.50290 5.50723 5.67346 5.73493 5.82870 5.93184 6.04602 6.13321 6.44921 6.67607 6.74113 7.25563 7.43759 8.85115 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004360 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.495117 B = 6420.261551 C = 7362.470765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.973 3.027 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.553 3.447 15 O -0.592 6.592 16 C -0.183 4.183 17 C -0.063 4.063 18 C -0.152 4.152 19 C -0.051 4.051 20 C -0.210 4.210 21 C 0.151 3.849 22 O -0.332 6.332 23 C 0.051 3.949 24 C 0.057 3.943 25 O -0.419 6.419 26 C 0.027 3.973 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.020 0.980 33 H -0.009 1.009 34 H 0.268 0.732 35 H 0.131 0.869 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -13.536 -19.270 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.007 3.993 4 N -0.322 5.322 5 C 0.145 3.855 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.796 3.204 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.196 1.196 14 C 0.342 3.658 15 O -0.474 6.474 16 C -0.187 4.187 17 C -0.081 4.081 18 C -0.170 4.170 19 C -0.069 4.069 20 C -0.228 4.228 21 C 0.104 3.896 22 O -0.245 6.245 23 C -0.024 4.024 24 C -0.019 4.019 25 O -0.338 6.338 26 C -0.069 4.069 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.038 0.962 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.181 0.819 37 H 0.190 0.810 38 H 0.180 0.820 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.516 -13.491 -18.458 23.774 hybrid contribution 0.190 0.611 1.330 1.476 sum 6.706 -12.880 -17.128 22.456 Atomic orbital electron populations 1.24023 0.95035 1.03054 0.98123 1.23231 0.96943 0.98005 1.02097 1.20988 0.92593 0.96077 0.89608 1.48089 1.08944 1.63529 1.11600 1.18685 0.93334 0.94035 0.79415 1.21684 1.42127 0.93271 1.01158 0.92529 1.25924 0.94362 1.04049 0.94841 1.70080 1.43032 1.38059 1.05701 0.85343 0.79034 0.78529 0.77457 1.18450 1.20595 1.19589 1.18755 0.81967 0.76012 0.89073 1.90683 1.57556 1.54941 1.44179 1.19333 1.08978 0.96444 0.93959 1.21227 0.97156 0.97582 0.92177 1.21355 1.00762 0.98925 0.95979 1.21571 0.93872 0.91658 0.99787 1.21528 1.06783 1.03622 0.90861 1.19203 0.93832 0.87946 0.88656 1.86243 1.75742 1.26520 1.36011 1.23253 0.99200 0.81660 0.98240 1.22791 0.84756 0.98304 0.96075 1.87921 1.28101 1.70376 1.47443 1.22893 1.03576 0.93686 0.86753 0.86598 0.87583 0.88770 0.90007 0.87435 0.96204 0.99135 0.92361 0.85089 0.81860 0.80985 0.81976 0.89444 0.87532 0.86988 0.93760 0.89344 0.91191 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 14.32 67.78 0.97 -3.81 16 2 C -0.18 -6.31 9.84 25.65 0.25 -6.05 16 3 C 0.13 4.87 5.67 85.63 0.49 5.36 16 4 N -0.59 -29.29 2.44 -834.25 -2.04 -31.33 16 5 C 0.27 15.89 5.22 85.64 0.45 16.34 16 6 C -0.54 -33.19 9.39 25.60 0.24 -32.95 16 7 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 8 C 0.01 0.43 5.46 84.66 0.46 0.89 16 9 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 10 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.55 27.97 6.78 86.70 0.59 28.56 16 15 O -0.59 -36.26 16.35 -1.93 -0.03 -36.29 16 16 C -0.18 -7.00 4.91 -20.01 -0.10 -7.10 16 17 C -0.06 -1.85 7.48 22.52 0.17 -1.68 16 18 C -0.15 -3.00 10.02 22.23 0.22 -2.78 16 19 C -0.05 -0.85 10.03 22.30 0.22 -0.63 16 20 C -0.21 -4.48 9.03 22.34 0.20 -4.27 16 21 C 0.15 4.97 6.69 22.84 0.15 5.12 16 22 O -0.33 -12.05 9.33 -77.97 -0.73 -12.78 16 23 C 0.05 1.15 5.12 71.98 0.37 1.52 16 24 C 0.06 1.30 6.32 71.98 0.45 1.75 16 25 O -0.42 -12.26 10.67 -144.34 -1.54 -13.80 16 26 C 0.03 0.59 11.01 113.37 1.25 1.84 16 27 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.11 2.91 7.84 -2.91 -0.02 2.89 16 29 H 0.09 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.08 3.06 7.76 -2.39 -0.02 3.04 16 31 H 0.11 3.45 4.42 -2.38 -0.01 3.44 16 32 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 33 H -0.01 -0.66 7.35 -2.39 -0.02 -0.67 16 34 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 35 H 0.13 3.84 7.58 -2.91 -0.02 3.82 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.16 2.28 6.30 -2.91 -0.02 2.26 16 39 H 0.09 1.62 7.66 -2.39 -0.02 1.61 16 40 H 0.11 1.70 7.66 -2.38 -0.02 1.68 16 41 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -89.27 383.92 5.34 -83.94 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.97 Total: 18.19 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.39 Total: 2.12 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.75 Total: -89.76 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -2.30 Total: -62.86 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -89.27 5.34 -83.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293756830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -89.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds