Wall clock time and date at job start Tue Mar 31 2020 12:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00091 * 2 1 4 4 H 1.09003 * 109.46826 * 20.29901 * 3 2 1 5 5 C 1.52995 * 109.47043 * 260.29464 * 3 2 1 6 6 N 1.46509 * 109.47093 * 63.13254 * 5 3 2 7 7 C 1.34774 * 119.99657 * 185.82483 * 6 5 3 8 8 O 1.21277 * 120.00531 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99466 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46662 * 179.97438 * 9 7 6 11 11 C 1.38302 * 119.93274 * 269.72228 * 10 9 7 12 12 C 1.38096 * 120.06703 * 179.72433 * 11 10 9 13 13 C 1.38877 * 119.93070 * 0.57914 * 12 11 10 14 14 O 1.35760 * 120.06531 * 179.67710 * 13 12 11 15 15 C 1.34831 * 116.99546 * 185.59436 * 14 13 12 16 16 H 1.07997 * 120.00357 * 5.18508 * 15 14 13 17 17 C 1.38656 * 119.99737 * 185.17973 * 15 14 13 18 18 N 1.31558 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47093 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47483 * 120.00086 * 19 17 15 22 22 H 1.48500 * 109.47148 * 240.00221 * 19 17 15 23 23 C 1.38877 * 119.86718 * 359.69972 * 13 12 11 24 24 C 1.38102 * 119.92439 * 0.02562 * 23 13 12 25 25 C 1.53001 * 109.47106 * 140.29355 * 3 2 1 26 26 C 1.52993 * 117.50125 * 8.74890 * 25 3 2 27 27 C 1.53003 * 117.50037 * 300.08862 * 25 3 2 28 28 H 1.09007 * 109.47270 * 185.20451 * 1 2 3 29 29 H 1.09005 * 109.47321 * 65.20494 * 1 2 3 30 30 H 1.09001 * 109.47784 * 305.20228 * 1 2 3 31 31 H 1.08998 * 109.47133 * 183.12799 * 5 3 2 32 32 H 1.08997 * 109.47386 * 303.12763 * 5 3 2 33 33 H 0.97002 * 119.99542 * 5.81647 * 6 5 3 34 34 H 1.08999 * 109.46979 * 299.99843 * 9 7 6 35 35 H 1.08993 * 109.46744 * 60.00040 * 9 7 6 36 36 H 1.08000 * 119.96188 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.03360 * 180.27111 * 12 11 10 38 38 H 0.97002 * 119.99846 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.03507 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96074 * 180.02562 * 24 23 13 41 41 H 1.09003 * 115.54901 * 154.42058 * 25 3 2 42 42 H 1.09002 * 117.49823 * 359.97438 * 26 25 3 43 43 H 1.09001 * 117.50411 * 145.01909 * 26 25 3 44 44 H 1.09004 * 117.49594 * 214.97884 * 27 25 3 45 45 H 1.08994 * 117.49741 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2774 2.0294 0.3565 5 6 2.4398 1.6725 -1.4218 6 7 1.2600 1.7317 -2.2885 7 6 1.4069 1.9228 -3.6145 8 8 2.5156 2.0463 -4.0903 9 6 0.1933 1.9832 -4.5060 10 6 0.6282 2.2038 -5.9319 11 6 0.7598 3.4903 -6.4221 12 6 1.1636 3.6957 -7.7266 13 6 1.4259 2.6087 -8.5501 14 8 1.8167 2.8074 -9.8350 15 6 1.9426 1.7132 -10.6126 16 1 1.6556 0.7441 -10.2319 17 6 2.4405 1.8320 -11.9013 18 7 2.7905 3.0124 -12.3649 19 14 2.6143 0.3162 -12.9789 20 1 2.1556 -0.8802 -12.2281 21 1 1.7879 0.4807 -14.2017 22 1 4.0381 0.1428 -13.3634 23 6 1.2872 1.3179 -8.0568 24 6 0.8886 1.1191 -6.7496 25 6 3.2314 1.3200 0.9216 26 6 3.7157 -0.0221 1.4739 27 6 3.0085 0.9749 2.3954 28 1 -0.3634 -1.0235 0.0932 29 1 -0.3634 0.4310 -0.9330 30 1 -0.3635 0.5924 0.8397 31 1 2.9331 2.6443 -1.4129 32 1 3.1302 0.9180 -1.7989 33 1 0.3732 1.6332 -1.9078 34 1 -0.3570 1.0450 -4.4345 35 1 -0.4484 2.8058 -4.1908 36 1 0.5505 4.3351 -5.7827 37 1 1.2704 4.7007 -8.1075 38 1 3.1392 3.0955 -13.2663 39 1 1.4901 0.4706 -8.6949 40 1 0.7809 0.1156 -6.3652 41 1 3.9869 2.0707 0.6891 42 1 3.1639 -0.9154 1.1811 43 1 4.7896 -0.1544 1.6052 44 1 3.6176 1.4982 3.1325 45 1 1.9918 0.7379 2.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294623619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:54 Heat of formation + Delta-G solvation = -58.463800 kcal Electronic energy + Delta-G solvation = -25662.340269 eV Core-core repulsion = 21839.740796 eV Total energy + Delta-G solvation = -3822.599474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.10854 -39.23632 -38.59123 -36.51967 -36.39209 -34.54761 -32.44154 -31.51723 -30.11470 -29.97754 -27.12355 -26.37466 -25.10872 -23.64795 -22.66103 -21.91084 -21.30041 -20.76601 -19.89296 -17.92867 -17.39223 -17.04535 -16.88824 -16.46435 -16.17285 -15.32165 -15.02589 -14.89150 -14.51570 -14.44895 -14.17555 -13.83948 -13.57005 -13.50608 -13.32035 -13.19243 -12.64627 -12.59137 -12.42040 -11.90383 -11.86715 -11.73146 -11.67591 -11.43830 -11.23130 -10.83563 -10.78797 -10.71749 -10.53620 -10.49146 -10.37328 -10.05376 -9.62806 -9.29367 -9.12051 -8.77540 -8.08928 -7.10635 -6.40170 -3.98423 2.30462 2.31884 2.81400 3.08262 3.15396 3.17169 3.21088 3.22835 3.54602 4.01109 4.25757 4.39064 4.50286 4.58583 4.72144 4.77770 4.89111 4.93216 5.01139 5.09877 5.15220 5.23914 5.27747 5.31344 5.34255 5.36285 5.40902 5.57620 5.67505 5.71239 5.76152 5.79235 5.90885 5.92160 6.28043 6.34020 6.48075 6.71745 6.76175 6.97434 7.11490 7.29295 7.42634 7.44190 7.50881 7.90105 8.05342 8.35277 9.05746 9.76982 10.78162 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002076 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.627251 B =13482.420780 C =13717.427989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.109 3.891 4 H 0.071 0.929 5 C 0.105 3.895 6 N -0.741 5.741 7 C 0.508 3.492 8 O -0.518 6.518 9 C -0.080 4.080 10 C -0.170 4.170 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.057 4.057 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.174 4.174 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -4.377 27.987 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.051 3.949 4 H 0.089 0.911 5 C -0.019 4.019 6 N -0.397 5.397 7 C 0.295 3.705 8 O -0.391 6.391 9 C -0.120 4.120 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.251 4.251 24 C -0.075 4.075 25 C -0.182 4.182 26 C -0.198 4.198 27 C -0.211 4.211 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.228 0.772 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.881 -4.152 27.258 28.001 hybrid contribution -0.443 -0.614 -0.297 0.813 sum -5.324 -4.766 26.961 27.892 Atomic orbital electron populations 1.22928 0.81100 1.03210 0.99698 1.87969 1.19451 1.27093 1.94863 1.21801 0.94493 0.85094 0.93502 0.91081 1.21774 0.89063 1.02282 0.88808 1.46189 1.09307 1.76378 1.07837 1.21067 0.91994 0.75748 0.81700 1.90750 1.26969 1.47141 1.74257 1.20408 0.95134 1.03561 0.92857 1.18622 1.11456 0.93701 0.93322 1.20391 0.97804 0.95377 0.94254 1.20143 1.09526 0.97450 0.93973 1.19395 0.91742 0.92932 0.85670 1.83993 1.73834 1.34629 1.15764 1.21369 1.44171 0.86763 0.94282 0.89066 1.25293 0.96181 0.98484 0.96685 1.70053 1.40024 1.22573 1.17197 0.85647 0.78340 0.79939 0.79492 1.19115 1.20183 1.20171 1.21110 1.10076 0.97255 0.96647 1.20513 0.96811 0.96957 0.93210 1.22370 0.99557 1.01474 0.94848 1.22894 1.00440 0.93968 1.02500 1.22931 1.02117 1.03981 0.92114 0.89290 0.94086 0.93782 0.90854 0.90278 0.77219 0.89091 0.89067 0.87413 0.86553 0.92130 0.85580 0.87841 0.86405 0.87521 0.88921 0.88741 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.60 101.05 1.07 1.22 16 2 O -0.38 -3.07 8.64 -35.23 -0.30 -3.38 16 3 C 0.11 0.81 2.70 -26.73 -0.07 0.74 16 4 H 0.07 0.43 7.62 -51.93 -0.40 0.03 16 5 C 0.10 1.05 5.34 -4.04 -0.02 1.02 16 6 N -0.74 -7.59 5.42 -60.29 -0.33 -7.91 16 7 C 0.51 7.26 7.82 -10.98 -0.09 7.18 16 8 O -0.52 -10.10 16.02 5.56 0.09 -10.01 16 9 C -0.08 -1.02 5.83 -29.03 -0.17 -1.19 16 10 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 11 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 12 C -0.19 -4.28 9.99 -39.40 -0.39 -4.67 16 13 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 14 O -0.18 -5.29 9.76 0.01 0.00 -5.29 16 15 C -0.39 -11.22 9.45 30.89 0.29 -10.93 16 16 H 0.09 2.44 5.29 -52.49 -0.28 2.17 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 19 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.23 -5.33 9.14 -39.39 -0.36 -5.69 16 24 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 25 C -0.16 -1.16 5.70 -90.62 -0.52 -1.67 16 26 C -0.16 -1.17 9.88 -26.70 -0.26 -1.43 16 27 C -0.17 -1.07 10.19 -26.69 -0.27 -1.34 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.19 5.79 -51.93 -0.30 -0.11 16 30 H 0.04 0.18 8.00 -51.93 -0.42 -0.24 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 33 H 0.39 2.82 5.89 -40.82 -0.24 2.58 16 34 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.90 5.71 -52.49 -0.30 2.60 16 40 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.12 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.11 0.88 7.06 -51.93 -0.37 0.51 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -35.40 377.87 -7.98 -43.38 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.50 Total: 5.23 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.37 Total: -18.60 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.43 Total: -33.07 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.22 Total: -18.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.40 -7.98 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294623619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.079 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds