Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00091 * 2 1 4 4 H 1.09003 * 109.46826 * 20.29901 * 3 2 1 5 5 C 1.52995 * 109.47043 * 260.29464 * 3 2 1 6 6 N 1.46509 * 109.47093 * 63.13254 * 5 3 2 7 7 C 1.34774 * 119.99657 * 185.82483 * 6 5 3 8 8 O 1.21277 * 120.00531 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99466 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46662 * 179.97438 * 9 7 6 11 11 C 1.38302 * 119.93274 * 269.72228 * 10 9 7 12 12 C 1.38096 * 120.06703 * 179.72433 * 11 10 9 13 13 C 1.38877 * 119.93070 * 0.57914 * 12 11 10 14 14 O 1.35760 * 120.06531 * 179.67710 * 13 12 11 15 15 C 1.34831 * 116.99546 * 185.59436 * 14 13 12 16 16 H 1.07997 * 120.00357 * 5.18508 * 15 14 13 17 17 C 1.38656 * 119.99737 * 185.17973 * 15 14 13 18 18 N 1.31558 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99982 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47093 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47483 * 120.00086 * 19 17 15 22 22 H 1.48500 * 109.47148 * 240.00221 * 19 17 15 23 23 C 1.38877 * 119.86718 * 359.69972 * 13 12 11 24 24 C 1.38102 * 119.92439 * 0.02562 * 23 13 12 25 25 C 1.53001 * 109.47106 * 140.29355 * 3 2 1 26 26 C 1.52993 * 117.50125 * 8.74890 * 25 3 2 27 27 C 1.53003 * 117.50037 * 300.08862 * 25 3 2 28 28 H 1.09007 * 109.47270 * 185.20451 * 1 2 3 29 29 H 1.09005 * 109.47321 * 65.20494 * 1 2 3 30 30 H 1.09001 * 109.47784 * 305.20228 * 1 2 3 31 31 H 1.08998 * 109.47133 * 183.12799 * 5 3 2 32 32 H 1.08997 * 109.47386 * 303.12763 * 5 3 2 33 33 H 0.97002 * 119.99542 * 5.81647 * 6 5 3 34 34 H 1.08999 * 109.46979 * 299.99843 * 9 7 6 35 35 H 1.08993 * 109.46744 * 60.00040 * 9 7 6 36 36 H 1.08000 * 119.96188 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.03360 * 180.27111 * 12 11 10 38 38 H 0.97002 * 119.99846 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.03507 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96074 * 180.02562 * 24 23 13 41 41 H 1.09003 * 115.54901 * 154.42058 * 25 3 2 42 42 H 1.09002 * 117.49823 * 359.97438 * 26 25 3 43 43 H 1.09001 * 117.50411 * 145.01909 * 26 25 3 44 44 H 1.09004 * 117.49594 * 214.97884 * 27 25 3 45 45 H 1.08994 * 117.49741 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2774 2.0294 0.3565 5 6 2.4398 1.6725 -1.4218 6 7 1.2600 1.7317 -2.2885 7 6 1.4069 1.9228 -3.6145 8 8 2.5156 2.0463 -4.0903 9 6 0.1933 1.9832 -4.5060 10 6 0.6282 2.2038 -5.9319 11 6 0.7598 3.4903 -6.4221 12 6 1.1636 3.6957 -7.7266 13 6 1.4259 2.6087 -8.5501 14 8 1.8167 2.8074 -9.8350 15 6 1.9426 1.7132 -10.6126 16 1 1.6556 0.7441 -10.2319 17 6 2.4405 1.8320 -11.9013 18 7 2.7905 3.0124 -12.3649 19 14 2.6143 0.3162 -12.9789 20 1 2.1556 -0.8802 -12.2281 21 1 1.7879 0.4807 -14.2017 22 1 4.0381 0.1428 -13.3634 23 6 1.2872 1.3179 -8.0568 24 6 0.8886 1.1191 -6.7496 25 6 3.2314 1.3200 0.9216 26 6 3.7157 -0.0221 1.4739 27 6 3.0085 0.9749 2.3954 28 1 -0.3634 -1.0235 0.0932 29 1 -0.3634 0.4310 -0.9330 30 1 -0.3635 0.5924 0.8397 31 1 2.9331 2.6443 -1.4129 32 1 3.1302 0.9180 -1.7989 33 1 0.3732 1.6332 -1.9078 34 1 -0.3570 1.0450 -4.4345 35 1 -0.4484 2.8058 -4.1908 36 1 0.5505 4.3351 -5.7827 37 1 1.2704 4.7007 -8.1075 38 1 3.1392 3.0955 -13.2663 39 1 1.4901 0.4706 -8.6949 40 1 0.7809 0.1156 -6.3652 41 1 3.9869 2.0707 0.6891 42 1 3.1639 -0.9154 1.1811 43 1 4.7896 -0.1544 1.6052 44 1 3.6176 1.4982 3.1325 45 1 1.9918 0.7379 2.7085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294623619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -82.625510 kcal Electronic energy + Delta-G solvation = -25663.388000 eV Core-core repulsion = 21839.740796 eV Total energy + Delta-G solvation = -3823.647204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17780 -40.57160 -39.74712 -38.19425 -36.97268 -35.53082 -34.40179 -32.96493 -31.78021 -30.86651 -28.28098 -27.36908 -26.82221 -24.48558 -23.63324 -23.17255 -22.49581 -21.80988 -20.88355 -19.84952 -18.87225 -18.21178 -17.64512 -17.34825 -16.91689 -16.60713 -16.35497 -16.00902 -15.89236 -15.61206 -15.43220 -15.35249 -15.03961 -14.57121 -14.40763 -14.30775 -14.15270 -13.93260 -13.58743 -13.17399 -12.98154 -12.76467 -12.49557 -12.39199 -12.35822 -12.26405 -12.23379 -12.16838 -12.10021 -11.30669 -11.20418 -11.08828 -10.91842 -10.77857 -10.49524 -10.07045 -9.76315 -8.90158 -8.48018 -6.15936 0.61428 0.66982 1.33475 1.42235 1.52412 1.72234 2.17121 2.19231 2.64709 2.84219 3.03798 3.17952 3.51274 3.66553 3.81433 3.86952 3.98357 4.05364 4.12784 4.19958 4.25040 4.29069 4.44995 4.48861 4.53348 4.57832 4.60209 4.62920 4.70081 4.80980 4.85250 4.87529 4.94470 5.05603 5.09140 5.14003 5.26080 5.30450 5.37384 5.44933 5.56329 5.71856 5.77797 6.02443 6.22706 6.23467 6.56746 6.96635 7.33449 7.78198 8.75794 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002076 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.627251 B =13482.420780 C =13717.427989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.395 6.395 3 C 0.118 3.882 4 H 0.094 0.906 5 C 0.105 3.895 6 N -0.719 5.719 7 C 0.509 3.491 8 O -0.580 6.580 9 C -0.078 4.078 10 C -0.146 4.146 11 C -0.057 4.057 12 C -0.206 4.206 13 C 0.111 3.889 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.026 4.026 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.244 4.244 24 C -0.062 4.062 25 C -0.173 4.173 26 C -0.174 4.174 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.411 0.589 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -5.525 31.527 33.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.314 6.314 3 C 0.060 3.940 4 H 0.112 0.888 5 C -0.020 4.020 6 N -0.374 5.374 7 C 0.296 3.704 8 O -0.459 6.459 9 C -0.117 4.117 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.061 3.939 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.117 0.883 17 C -0.223 4.223 18 N -0.560 5.560 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.263 4.263 24 C -0.080 4.080 25 C -0.192 4.192 26 C -0.211 4.211 27 C -0.196 4.196 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.082 -5.313 30.904 32.148 hybrid contribution 0.103 -0.236 -0.983 1.016 sum -6.979 -5.550 29.921 31.221 Atomic orbital electron populations 1.23136 0.79655 1.04131 1.00871 1.87968 1.21165 1.27420 1.94861 1.21729 0.95125 0.85497 0.91646 0.88835 1.21807 0.88596 1.01397 0.90172 1.45981 1.10515 1.74287 1.06661 1.21250 0.91320 0.74924 0.82855 1.90757 1.29226 1.50410 1.75517 1.20544 0.95134 1.07318 0.88685 1.19255 1.07062 0.92576 0.95782 1.20888 0.96091 0.97542 0.92998 1.20447 1.09944 0.96753 0.95399 1.19955 0.93656 0.95002 0.85265 1.83949 1.76849 1.35447 1.17805 1.21847 1.44738 0.87187 0.95102 0.88300 1.26633 0.95464 1.02284 0.97909 1.70197 1.42380 1.25383 1.18022 0.84506 0.78646 0.75603 0.77267 1.17544 1.19003 1.19407 1.21224 1.10760 0.96040 0.98321 1.20935 0.95786 0.99393 0.91852 1.22446 0.99728 1.01309 0.95668 1.22888 1.00652 0.93817 1.03789 1.22982 1.02362 1.02686 0.91609 0.88805 0.93212 0.92058 0.91003 0.93079 0.74972 0.85449 0.84826 0.83369 0.86888 0.91830 0.86600 0.84582 0.86153 0.88749 0.88692 0.87597 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.60 113.37 1.20 1.33 16 2 O -0.39 -5.44 8.64 -148.98 -1.29 -6.72 16 3 C 0.12 1.44 2.70 30.59 0.08 1.52 16 4 H 0.09 0.73 7.62 -2.39 -0.02 0.72 16 5 C 0.10 1.88 5.34 86.38 0.46 2.34 16 6 N -0.72 -12.05 5.42 -463.06 -2.51 -14.56 16 7 C 0.51 12.73 7.82 87.66 0.69 13.41 16 8 O -0.58 -21.77 16.02 -3.02 -0.05 -21.82 16 9 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 10 C -0.15 -4.74 4.38 -19.83 -0.09 -4.83 16 11 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 12 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 13 C 0.11 5.93 6.65 22.58 0.15 6.08 16 14 O -0.23 -14.82 9.76 -22.87 -0.22 -15.04 16 15 C -0.41 -25.16 9.45 67.92 0.64 -24.52 16 16 H 0.10 5.58 5.29 -2.91 -0.02 5.57 16 17 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 18 N -0.92 -58.45 13.67 21.61 0.30 -58.15 16 19 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 20 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.24 -11.50 9.14 22.39 0.20 -11.30 16 24 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 25 C -0.17 -2.11 5.70 -10.79 -0.06 -2.18 16 26 C -0.17 -2.32 9.88 30.62 0.30 -2.02 16 27 C -0.16 -1.57 10.19 30.62 0.31 -1.26 16 28 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 0.24 5.79 -2.38 -0.01 0.23 16 30 H 0.06 0.23 8.00 -2.39 -0.02 0.22 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.41 3.85 5.89 -92.71 -0.55 3.30 16 34 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.13 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.12 5.56 5.71 -2.91 -0.02 5.54 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.12 1.38 8.11 -2.39 -0.02 1.36 16 42 H 0.09 1.49 7.06 -2.39 -0.02 1.47 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -85.00 377.87 3.90 -81.10 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.46 Total: 25.58 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 5.18 Total: -36.95 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -2.21 Total: -72.71 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.56 Total: -43.58 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -85.00 3.90 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294623619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.527 kcal (2) G-P(sol) polarization free energy of solvation -84.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds