Wall clock time and date at job start Tue Mar 31 2020 12:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00418 * 2 1 4 4 O 1.20833 * 119.99662 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00183 * 180.02562 * 3 2 1 6 6 H 1.08991 * 110.36779 * 57.64235 * 5 3 2 7 7 C 1.54375 * 110.40473 * 295.16427 * 5 3 2 8 8 C 1.54261 * 105.06124 * 217.36891 * 7 5 3 9 9 H 1.08996 * 110.32932 * 118.99930 * 8 7 5 10 10 O 1.42902 * 110.32720 * 241.11105 * 8 7 5 11 11 C 1.42893 * 114.00152 * 209.99813 * 10 8 7 12 12 C 1.54385 * 105.05828 * 0.02562 * 8 7 5 13 13 N 1.48560 * 104.59606 * 23.85186 * 12 8 7 14 14 C 1.46890 * 111.00183 * 200.96230 * 13 12 8 15 15 C 1.50707 * 109.47054 * 285.41648 * 14 13 12 16 16 C 1.38628 * 119.74868 * 269.72356 * 15 14 13 17 17 C 1.37619 * 120.24988 * 180.27109 * 16 15 14 18 18 C 1.40715 * 119.74145 * 0.03036 * 17 16 15 19 19 C 1.41401 * 120.24573 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00056 * 204.37530 * 19 18 17 21 21 C 1.39954 * 119.99617 * 24.37019 * 19 18 17 22 22 N 1.30820 * 120.00037 * 17.87621 * 21 19 18 23 23 Si 1.86800 * 119.99925 * 197.86872 * 21 19 18 24 24 H 1.48508 * 109.46909 * 60.00327 * 23 21 19 25 25 H 1.48486 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47026 * 300.00607 * 23 21 19 27 27 C 1.40720 * 119.51353 * 359.97089 * 18 17 16 28 28 C 1.37616 * 119.74355 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.46864 * 59.99990 * 1 2 3 30 30 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46821 * 300.00669 * 1 2 3 32 32 H 1.08999 * 110.33185 * 336.26588 * 7 5 3 33 33 H 1.09005 * 110.32423 * 98.48051 * 7 5 3 34 34 H 1.09002 * 109.47161 * 59.99399 * 11 10 8 35 35 H 1.08997 * 109.47663 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47567 * 299.99921 * 11 10 8 37 37 H 1.09000 * 110.41194 * 265.06927 * 12 8 7 38 38 H 1.08997 * 110.41152 * 142.63538 * 12 8 7 39 39 H 1.09003 * 109.47525 * 165.42149 * 14 13 12 40 40 H 1.09003 * 109.47725 * 45.41721 * 14 13 12 41 41 H 1.08006 * 119.87817 * 0.25795 * 16 15 14 42 42 H 1.07994 * 120.13331 * 180.02562 * 17 16 15 43 43 H 0.96997 * 120.00075 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.12749 * 180.02562 * 27 18 17 45 45 H 1.07998 * 119.87707 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9735 0.7487 -0.8640 7 6 4.1366 0.6882 1.3086 8 6 5.3408 1.5864 1.6592 9 1 5.1847 2.0694 2.6238 10 8 6.5448 0.8170 1.6794 11 6 7.5318 1.3059 2.5897 12 6 5.3964 2.6405 0.5326 13 7 4.0105 2.6927 0.0000 14 6 3.9893 3.2513 -1.3584 15 6 4.2050 4.7414 -1.2922 16 6 3.1145 5.5900 -1.1800 17 6 3.2992 6.9526 -1.1244 18 6 4.6011 7.4835 -1.1824 19 6 4.8031 8.8819 -1.1267 20 1 5.6968 9.3157 -1.5504 21 6 3.8449 9.7037 -0.5225 22 7 2.9552 9.1865 0.2851 23 14 3.8366 11.5393 -0.8691 24 1 3.6395 11.7675 -2.3233 25 1 2.7316 12.1808 -0.1127 26 1 5.1326 12.1286 -0.4468 27 6 5.7005 6.6125 -1.2963 28 6 5.4920 5.2533 -1.3502 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 3.3888 0.7317 2.1004 33 1 4.4641 -0.3396 1.1520 34 1 7.1280 1.2980 3.6021 35 1 8.4144 0.6677 2.5459 36 1 7.8059 2.3247 2.3158 37 1 6.0916 2.3279 -0.2465 38 1 5.6861 3.6114 0.9344 39 1 3.0245 3.0441 -1.8214 40 1 4.7822 2.7954 -1.9513 41 1 2.1161 5.1802 -1.1363 42 1 2.4484 7.6119 -1.0366 43 1 2.2908 9.7561 0.7035 44 1 6.7039 7.0093 -1.3413 45 1 6.3342 4.5829 -1.4380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343545555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:44 Heat of formation + Delta-G solvation = -98.178523 kcal Electronic energy + Delta-G solvation = -27038.222195 eV Core-core repulsion = 23213.900562 eV Total energy + Delta-G solvation = -3824.321633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65007 -39.14750 -37.65714 -36.77874 -36.02777 -33.86323 -31.98912 -29.75985 -29.50568 -29.09462 -27.42957 -26.81736 -25.98954 -23.78811 -22.59945 -21.20249 -20.73659 -20.28066 -19.69058 -17.69243 -17.23533 -16.90821 -16.70237 -16.34190 -15.59128 -15.26971 -15.11469 -14.62955 -14.25106 -14.12141 -13.88394 -13.67605 -13.15252 -13.13413 -12.79214 -12.67968 -12.46497 -12.31206 -12.01148 -11.85401 -11.80823 -11.58735 -11.41289 -11.29567 -11.00145 -10.88789 -10.76301 -10.64621 -10.46261 -10.37845 -10.21325 -9.68227 -9.55491 -9.30302 -9.06938 -8.28429 -7.36735 -7.24943 -6.70817 -4.30215 2.31420 2.57027 2.81602 3.08759 3.11088 3.14416 3.22103 3.58393 3.96091 4.34079 4.43538 4.52427 4.76083 4.86222 5.00099 5.03820 5.10781 5.13879 5.20435 5.31139 5.40840 5.46342 5.58047 5.63295 5.65394 5.73179 5.78428 5.84719 5.93712 6.13835 6.24319 6.35898 6.41909 6.53035 6.84312 7.03072 7.11627 7.14684 7.21414 7.37034 7.44700 7.68518 7.89912 7.93183 8.11169 8.22713 8.36057 8.70900 8.94731 9.04077 10.23233 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003449 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.037815 B = 8116.944660 C = 9511.642104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.472 6.472 5 C 0.067 3.933 6 H 0.088 0.912 7 C -0.105 4.105 8 C 0.082 3.918 9 H 0.078 0.922 10 O -0.384 6.384 11 C 0.030 3.970 12 C 0.022 3.978 13 N -0.477 5.477 14 C 0.112 3.888 15 C -0.205 4.205 16 C -0.073 4.073 17 C -0.168 4.168 18 C 0.114 3.886 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.077 3.923 22 N -0.790 5.790 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.229 4.229 28 C -0.083 4.083 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.281 0.719 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -17.000 2.880 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.355 6.355 5 C -0.042 4.042 6 H 0.105 0.895 7 C -0.143 4.143 8 C 0.024 3.976 9 H 0.096 0.904 10 O -0.302 6.302 11 C -0.067 4.067 12 C -0.106 4.106 13 N -0.203 5.203 14 C -0.014 4.014 15 C -0.207 4.207 16 C -0.092 4.092 17 C -0.188 4.188 18 C 0.111 3.889 19 C -0.495 4.495 20 H 0.094 0.906 21 C -0.141 4.141 22 N -0.415 5.415 23 Si 0.731 3.269 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.249 4.249 28 C -0.102 4.102 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.034 -16.446 3.247 16.763 hybrid contribution 0.211 0.746 -0.367 0.858 sum 0.245 -15.700 2.880 15.964 Atomic orbital electron populations 1.23217 0.76600 1.03298 1.02634 1.86485 1.23172 1.33833 1.84777 1.23456 0.91459 0.81385 0.73360 1.90732 1.66321 1.35992 1.42504 1.22192 0.88011 0.93735 1.00305 0.89461 1.22290 0.96316 1.00145 0.95566 1.22906 0.84317 0.91267 0.99142 0.90379 1.87899 1.25840 1.53414 1.63076 1.22801 0.91756 0.99772 0.92334 1.23590 0.89906 1.00096 0.96988 1.65318 1.19252 1.11399 1.24310 1.20968 0.99731 0.94260 0.86464 1.18711 0.93563 0.91539 1.16901 1.20534 0.96270 0.93697 0.98724 1.21305 0.97589 0.93397 1.06496 1.17611 0.91034 0.92907 0.87325 1.19561 1.04891 0.91689 1.33313 0.90608 1.25904 0.94224 1.01257 0.92756 1.69832 1.13742 1.38182 1.19778 0.86403 0.78701 0.82095 0.79706 1.18856 1.20365 1.19076 1.20901 0.97198 0.92666 1.14094 1.20323 0.94446 0.94756 1.00665 0.91980 0.88340 0.91948 0.89865 0.88765 0.93979 0.89756 0.93584 0.92536 0.88603 0.91434 0.95187 0.89281 0.86589 0.90849 0.89258 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.55 10.56 -39.25 -0.41 -4.96 16 3 C 0.46 6.96 6.89 36.01 0.25 7.21 16 4 O -0.47 -8.86 15.65 -18.76 -0.29 -9.15 16 5 C 0.07 0.94 2.78 -67.21 -0.19 0.75 16 6 H 0.09 1.09 7.99 -51.93 -0.42 0.67 16 7 C -0.11 -1.24 6.35 -25.35 -0.16 -1.40 16 8 C 0.08 1.03 3.54 -25.35 -0.09 0.94 16 9 H 0.08 0.95 7.81 -51.93 -0.41 0.54 16 10 O -0.38 -4.64 10.31 -35.23 -0.36 -5.00 16 11 C 0.03 0.28 10.85 101.05 1.10 1.38 16 12 C 0.02 0.33 5.44 -2.18 -0.01 0.32 16 13 N -0.48 -8.11 4.59 -224.92 -1.03 -9.14 16 14 C 0.11 2.07 4.78 -4.98 -0.02 2.04 16 15 C -0.21 -4.58 5.22 -104.33 -0.54 -5.12 16 16 C -0.07 -1.81 9.67 -39.66 -0.38 -2.19 16 17 C -0.17 -4.53 8.70 -38.87 -0.34 -4.87 16 18 C 0.11 3.09 5.58 -106.82 -0.60 2.50 16 19 C -0.46 -12.57 9.06 -37.74 -0.34 -12.91 16 20 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 21 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 22 N -0.79 -20.99 10.95 55.55 0.61 -20.38 16 23 Si 0.91 18.99 29.60 -169.99 -5.03 13.96 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 28 C -0.08 -1.86 8.89 -39.66 -0.35 -2.21 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.09 0.96 7.98 -51.93 -0.41 0.55 16 34 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.84 7.69 -51.93 -0.40 0.44 16 38 H 0.10 1.62 7.88 -51.93 -0.41 1.21 16 39 H 0.07 1.27 7.34 -51.93 -0.38 0.89 16 40 H 0.03 0.51 7.71 -51.93 -0.40 0.11 16 41 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 42 H 0.12 3.24 6.15 -52.49 -0.32 2.92 16 43 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 44 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -30.73 373.79 -8.89 -39.62 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.91 Total: 5.75 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.09 Total: -16.32 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: -0.42 Total: -29.52 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.07 Total: -19.11 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.73 -8.89 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343545555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.558 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds