Wall clock time and date at job start Tue Mar 31 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00418 * 2 1 4 4 O 1.20833 * 119.99662 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00183 * 180.02562 * 3 2 1 6 6 H 1.08991 * 110.36779 * 57.64235 * 5 3 2 7 7 C 1.54375 * 110.40473 * 295.16427 * 5 3 2 8 8 C 1.54261 * 105.06124 * 217.36891 * 7 5 3 9 9 H 1.08996 * 110.32932 * 118.99930 * 8 7 5 10 10 O 1.42902 * 110.32720 * 241.11105 * 8 7 5 11 11 C 1.42893 * 114.00152 * 209.99813 * 10 8 7 12 12 C 1.54385 * 105.05828 * 0.02562 * 8 7 5 13 13 N 1.48560 * 104.59606 * 23.85186 * 12 8 7 14 14 C 1.46890 * 111.00183 * 200.96230 * 13 12 8 15 15 C 1.50707 * 109.47054 * 285.41648 * 14 13 12 16 16 C 1.38628 * 119.74868 * 269.72356 * 15 14 13 17 17 C 1.37619 * 120.24988 * 180.27109 * 16 15 14 18 18 C 1.40715 * 119.74145 * 0.03036 * 17 16 15 19 19 C 1.41401 * 120.24573 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00056 * 204.37530 * 19 18 17 21 21 C 1.39954 * 119.99617 * 24.37019 * 19 18 17 22 22 N 1.30820 * 120.00037 * 17.87621 * 21 19 18 23 23 Si 1.86800 * 119.99925 * 197.86872 * 21 19 18 24 24 H 1.48508 * 109.46909 * 60.00327 * 23 21 19 25 25 H 1.48486 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47026 * 300.00607 * 23 21 19 27 27 C 1.40720 * 119.51353 * 359.97089 * 18 17 16 28 28 C 1.37616 * 119.74355 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.46864 * 59.99990 * 1 2 3 30 30 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46821 * 300.00669 * 1 2 3 32 32 H 1.08999 * 110.33185 * 336.26588 * 7 5 3 33 33 H 1.09005 * 110.32423 * 98.48051 * 7 5 3 34 34 H 1.09002 * 109.47161 * 59.99399 * 11 10 8 35 35 H 1.08997 * 109.47663 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47567 * 299.99921 * 11 10 8 37 37 H 1.09000 * 110.41194 * 265.06927 * 12 8 7 38 38 H 1.08997 * 110.41152 * 142.63538 * 12 8 7 39 39 H 1.09003 * 109.47525 * 165.42149 * 14 13 12 40 40 H 1.09003 * 109.47725 * 45.41721 * 14 13 12 41 41 H 1.08006 * 119.87817 * 0.25795 * 16 15 14 42 42 H 1.07994 * 120.13331 * 180.02562 * 17 16 15 43 43 H 0.96997 * 120.00075 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.12749 * 180.02562 * 27 18 17 45 45 H 1.07998 * 119.87707 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9735 0.7487 -0.8640 7 6 4.1366 0.6882 1.3086 8 6 5.3408 1.5864 1.6592 9 1 5.1847 2.0694 2.6238 10 8 6.5448 0.8170 1.6794 11 6 7.5318 1.3059 2.5897 12 6 5.3964 2.6405 0.5326 13 7 4.0105 2.6927 0.0000 14 6 3.9893 3.2513 -1.3584 15 6 4.2050 4.7414 -1.2922 16 6 3.1145 5.5900 -1.1800 17 6 3.2992 6.9526 -1.1244 18 6 4.6011 7.4835 -1.1824 19 6 4.8031 8.8819 -1.1267 20 1 5.6968 9.3157 -1.5504 21 6 3.8449 9.7037 -0.5225 22 7 2.9552 9.1865 0.2851 23 14 3.8366 11.5393 -0.8691 24 1 3.6395 11.7675 -2.3233 25 1 2.7316 12.1808 -0.1127 26 1 5.1326 12.1286 -0.4468 27 6 5.7005 6.6125 -1.2963 28 6 5.4920 5.2533 -1.3502 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 3.3888 0.7317 2.1004 33 1 4.4641 -0.3396 1.1520 34 1 7.1280 1.2980 3.6021 35 1 8.4144 0.6677 2.5459 36 1 7.8059 2.3247 2.3158 37 1 6.0916 2.3279 -0.2465 38 1 5.6861 3.6114 0.9344 39 1 3.0245 3.0441 -1.8214 40 1 4.7822 2.7954 -1.9513 41 1 2.1161 5.1802 -1.1363 42 1 2.4484 7.6119 -1.0366 43 1 2.2908 9.7561 0.7035 44 1 6.7039 7.0093 -1.3413 45 1 6.3342 4.5829 -1.4380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343545555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:43 Heat of formation + Delta-G solvation = -116.673816 kcal Electronic energy + Delta-G solvation = -27039.024211 eV Core-core repulsion = 23213.900562 eV Total energy + Delta-G solvation = -3825.123649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79215 -40.28817 -39.32823 -37.93883 -37.21017 -35.69611 -33.47165 -31.37738 -30.95152 -30.69182 -28.31244 -28.17123 -27.14750 -25.29651 -23.87913 -22.90936 -22.18867 -21.47522 -21.31216 -19.20544 -18.78179 -17.97643 -17.76850 -17.37210 -17.17974 -16.55028 -16.25871 -16.01667 -15.68420 -15.54883 -15.17969 -14.95604 -14.66141 -14.28386 -14.18519 -14.10642 -13.82720 -13.68722 -13.50909 -13.21581 -12.94007 -12.88802 -12.73364 -12.72214 -12.45085 -12.37620 -12.17981 -12.08888 -11.77836 -11.67215 -11.48549 -11.38192 -11.22392 -10.99365 -10.60000 -9.56675 -9.33686 -9.17907 -8.62616 -6.32854 0.94508 1.16405 1.16692 1.36545 1.47716 1.50807 1.62325 2.20187 2.57289 2.76134 3.26229 3.38832 3.48691 3.81251 3.86457 3.99562 4.13984 4.20947 4.28616 4.32743 4.33445 4.36210 4.52028 4.54655 4.57642 4.59670 4.70241 4.71228 4.75277 4.82814 4.84365 4.91206 4.99092 5.06952 5.15641 5.32986 5.38088 5.46474 5.64832 5.72953 5.87074 6.00480 6.11542 6.23800 6.30515 6.39288 6.72076 6.79444 6.94901 7.05530 8.33933 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003449 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.037815 B = 8116.944660 C = 9511.642104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.519 6.519 5 C 0.068 3.932 6 H 0.110 0.890 7 C -0.096 4.096 8 C 0.089 3.911 9 H 0.080 0.920 10 O -0.390 6.390 11 C 0.023 3.977 12 C 0.024 3.976 13 N -0.503 5.503 14 C 0.120 3.880 15 C -0.193 4.193 16 C -0.084 4.084 17 C -0.193 4.193 18 C 0.082 3.918 19 C -0.503 4.503 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.827 5.827 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.241 4.241 28 C -0.076 4.076 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.287 0.713 44 H 0.099 0.901 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -19.142 3.030 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.406 6.406 5 C -0.041 4.041 6 H 0.128 0.872 7 C -0.134 4.134 8 C 0.031 3.969 9 H 0.098 0.902 10 O -0.309 6.309 11 C -0.073 4.073 12 C -0.104 4.104 13 N -0.229 5.229 14 C -0.007 4.007 15 C -0.194 4.194 16 C -0.103 4.103 17 C -0.212 4.212 18 C 0.080 3.920 19 C -0.533 4.533 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.453 5.453 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.193 1.193 26 H -0.181 1.181 27 C -0.261 4.261 28 C -0.095 4.095 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.081 -18.634 3.403 18.973 hybrid contribution -0.119 1.192 -0.392 1.260 sum 0.963 -17.442 3.011 17.726 Atomic orbital electron populations 1.23529 0.74947 1.05727 1.02193 1.86477 1.24732 1.32240 1.84001 1.23733 0.91950 0.81355 0.71984 1.90725 1.67364 1.37601 1.44933 1.22305 0.87407 0.91995 1.02427 0.87221 1.22289 0.95795 1.00929 0.94386 1.22760 0.85112 0.90866 0.98182 0.90201 1.87885 1.25888 1.53229 1.63864 1.22995 0.91919 0.99936 0.92450 1.23546 0.88984 0.99878 0.98003 1.65079 1.20624 1.14018 1.23171 1.20813 1.00250 0.91634 0.87987 1.19118 0.92760 0.93777 1.13788 1.20646 0.97180 0.93311 0.99133 1.21222 0.97182 0.94144 1.08681 1.17937 0.91712 0.93848 0.88511 1.19835 1.06067 0.92360 1.34996 0.90511 1.26799 0.93298 1.06180 0.91793 1.69907 1.14552 1.40180 1.20660 0.85254 0.79206 0.75685 0.79551 1.18494 1.19306 1.18109 1.21141 0.97056 0.93702 1.14152 1.20614 0.95557 0.94276 0.99021 0.92543 0.84434 0.92395 0.89516 0.86445 0.92880 0.87812 0.94130 0.91795 0.91004 0.92087 0.92771 0.89528 0.88766 0.90283 0.88328 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.13 10.56 -51.39 -0.54 -8.68 16 3 C 0.47 13.43 6.89 71.24 0.49 13.92 16 4 O -0.52 -19.53 15.65 21.94 0.34 -19.19 16 5 C 0.07 1.73 2.78 44.31 0.12 1.86 16 6 H 0.11 2.34 7.99 -2.39 -0.02 2.32 16 7 C -0.10 -1.98 6.35 31.49 0.20 -1.78 16 8 C 0.09 2.04 3.54 31.49 0.11 2.15 16 9 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 10 O -0.39 -8.27 10.31 -148.98 -1.54 -9.81 16 11 C 0.02 0.38 10.85 113.37 1.23 1.61 16 12 C 0.02 0.67 5.44 86.45 0.47 1.14 16 13 N -0.50 -16.42 4.59 -865.50 -3.97 -20.39 16 14 C 0.12 4.27 4.78 85.56 0.41 4.68 16 15 C -0.19 -8.56 5.22 -19.67 -0.10 -8.67 16 16 C -0.08 -4.28 9.67 22.22 0.21 -4.07 16 17 C -0.19 -10.92 8.70 22.73 0.20 -10.72 16 18 C 0.08 4.64 5.58 -21.29 -0.12 4.53 16 19 C -0.50 -28.22 9.06 23.46 0.21 -28.00 16 20 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 21 C 0.03 1.79 5.14 85.26 0.44 2.22 16 22 N -0.83 -45.75 10.95 21.83 0.24 -45.51 16 23 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 27 C -0.24 -12.10 9.80 22.73 0.22 -11.88 16 28 C -0.08 -3.34 8.89 22.22 0.20 -3.14 16 29 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 32 H 0.09 1.74 7.85 -2.39 -0.02 1.72 16 33 H 0.12 1.91 7.98 -2.38 -0.02 1.89 16 34 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.71 7.69 -2.39 -0.02 1.70 16 38 H 0.07 2.38 7.88 -2.39 -0.02 2.36 16 39 H 0.06 2.25 7.34 -2.39 -0.02 2.23 16 40 H 0.05 1.66 7.71 -2.39 -0.02 1.65 16 41 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.09 5.64 6.15 -2.91 -0.02 5.62 16 43 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 44 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -69.45 373.79 3.03 -66.42 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.98 Total: 29.91 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 5.49 Total: -34.45 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -3.73 Total: -65.90 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.74 Total: -37.68 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -69.45 3.03 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343545555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.253 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds