Wall clock time and date at job start Tue Mar 31 2020 12:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99867 * 2 1 4 4 O 1.20823 * 119.99737 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99793 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.46522 * 302.41044 * 5 3 2 7 7 C 1.54380 * 110.41164 * 64.82505 * 5 3 2 8 8 C 1.54256 * 105.06102 * 142.62962 * 7 5 3 9 9 H 1.09004 * 110.32685 * 241.10155 * 8 7 5 10 10 O 1.42901 * 110.32540 * 118.89544 * 8 7 5 11 11 C 1.42905 * 114.00038 * 152.90774 * 10 8 7 12 12 C 1.54382 * 105.06084 * 359.97438 * 8 7 5 13 13 N 1.48560 * 110.40842 * 179.97438 * 5 3 2 14 14 C 1.46896 * 111.00074 * 82.18510 * 13 5 3 15 15 C 1.50708 * 109.47163 * 185.29406 * 14 13 5 16 16 C 1.38629 * 119.75158 * 89.99614 * 15 14 13 17 17 C 1.37616 * 120.24685 * 179.97438 * 16 15 14 18 18 C 1.40714 * 119.74604 * 0.02562 * 17 16 15 19 19 C 1.41395 * 120.24112 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99568 * 155.58334 * 19 18 17 21 21 C 1.39946 * 120.00621 * 335.31228 * 19 18 17 22 22 N 1.30823 * 119.99390 * 342.55986 * 21 19 18 23 23 Si 1.86793 * 120.00145 * 162.56213 * 21 19 18 24 24 H 1.48504 * 109.47123 * 90.00063 * 23 21 19 25 25 H 1.48504 * 109.46771 * 209.99514 * 23 21 19 26 26 H 1.48495 * 109.47393 * 329.99926 * 23 21 19 27 27 C 1.40707 * 119.51119 * 0.26996 * 18 17 16 28 28 C 1.37627 * 119.74628 * 359.42829 * 27 18 17 29 29 H 1.08995 * 109.46925 * 60.00276 * 1 2 3 30 30 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47184 * 300.00288 * 1 2 3 32 32 H 1.09001 * 110.32483 * 23.73626 * 7 5 3 33 33 H 1.09003 * 110.32748 * 261.52341 * 7 5 3 34 34 H 1.08997 * 109.47316 * 300.00353 * 11 10 8 35 35 H 1.09003 * 109.47253 * 60.00356 * 11 10 8 36 36 H 1.09003 * 109.46971 * 180.02562 * 11 10 8 37 37 H 1.09007 * 110.41028 * 217.36946 * 12 8 7 38 38 H 1.08996 * 110.40854 * 94.93024 * 12 8 7 39 39 H 1.08994 * 109.47668 * 65.28756 * 14 13 5 40 40 H 1.08998 * 109.46657 * 305.28814 * 14 13 5 41 41 H 1.08007 * 119.87515 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.12717 * 180.02562 * 17 16 15 43 43 H 0.97002 * 119.99788 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12688 * 179.69910 * 27 18 17 45 45 H 1.07993 * 119.87846 * 180.27171 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9752 0.7485 0.8629 7 6 4.1367 0.6882 -1.3085 8 6 5.3408 1.5864 -1.6591 9 1 5.1839 2.0706 -2.6230 10 8 6.5448 0.8170 -1.6792 11 6 7.5565 1.3431 -2.5405 12 6 5.3962 2.6407 -0.5327 13 7 4.0108 2.6925 -0.0001 14 6 3.9898 3.2515 1.3581 15 6 4.3199 4.7209 1.3018 16 6 3.3015 5.6495 1.1518 17 6 3.5913 6.9937 1.0997 18 6 4.9273 7.4243 1.1987 19 6 5.2370 8.8029 1.1458 20 1 6.1467 9.1697 1.5979 21 6 4.3676 9.6913 0.5029 22 7 3.4665 9.2372 -0.3298 23 14 4.4939 11.5254 0.8335 24 1 5.4384 12.1390 -0.1344 25 1 3.1548 12.1491 0.6816 26 1 4.9889 11.7463 2.2160 27 6 5.9533 6.4725 1.3444 28 6 5.6397 5.1336 1.4004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3888 0.7315 -2.1003 33 1 4.4641 -0.3396 -1.1517 34 1 7.1806 1.3788 -3.5630 35 1 7.8230 2.3490 -2.2160 36 1 8.4375 0.7024 -2.4998 37 1 5.6858 3.6117 -0.9348 38 1 6.0913 2.3282 0.2465 39 1 4.7269 2.7368 1.9743 40 1 2.9981 3.1182 1.7905 41 1 2.2768 5.3166 1.0756 42 1 2.7964 7.7155 0.9832 43 1 2.8637 9.8529 -0.7752 44 1 6.9825 6.7916 1.4165 45 1 6.4250 4.4015 1.5166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343545561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:58 Heat of formation + Delta-G solvation = -98.458485 kcal Electronic energy + Delta-G solvation = -27050.481983 eV Core-core repulsion = 23226.148209 eV Total energy + Delta-G solvation = -3824.333773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.65987 -39.15659 -37.66498 -36.77678 -36.03397 -33.87168 -31.99379 -29.74840 -29.51235 -29.10103 -27.43115 -26.82279 -25.98175 -23.80280 -22.59659 -21.20046 -20.74133 -20.28858 -19.68064 -17.70027 -17.24888 -16.91387 -16.70672 -16.34684 -15.58741 -15.27452 -15.10669 -14.62349 -14.23906 -14.12156 -13.90305 -13.68231 -13.15859 -13.12607 -12.77807 -12.68739 -12.48162 -12.31492 -12.01808 -11.86397 -11.79423 -11.57756 -11.42191 -11.30900 -10.98802 -10.89185 -10.77217 -10.64962 -10.46933 -10.38975 -10.21664 -9.66932 -9.55483 -9.32033 -9.07991 -8.28712 -7.38206 -7.25593 -6.71705 -4.31339 2.30138 2.56189 2.79615 3.08609 3.11779 3.13481 3.20562 3.59467 3.95534 4.34546 4.43873 4.52945 4.75385 4.86826 5.00034 5.02766 5.10130 5.15128 5.21610 5.33427 5.41011 5.46241 5.59920 5.64363 5.66154 5.73221 5.77661 5.87331 5.92343 6.15830 6.24885 6.34696 6.40863 6.52080 6.85315 7.01897 7.10788 7.15478 7.21413 7.35586 7.43498 7.67317 7.88577 7.91825 8.10162 8.21157 8.34891 8.69819 8.93728 9.02797 10.22300 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.003437 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.261412 B = 8144.920082 C = 9507.037292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.464 3.536 4 O -0.473 6.473 5 C 0.067 3.933 6 H 0.088 0.912 7 C -0.104 4.104 8 C 0.082 3.918 9 H 0.078 0.922 10 O -0.384 6.384 11 C 0.030 3.970 12 C 0.022 3.978 13 N -0.477 5.477 14 C 0.112 3.888 15 C -0.207 4.207 16 C -0.074 4.074 17 C -0.168 4.168 18 C 0.114 3.886 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.791 5.791 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.228 4.228 28 C -0.083 4.083 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.280 0.720 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -16.853 -2.826 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.304 3.696 4 O -0.357 6.357 5 C -0.043 4.043 6 H 0.106 0.894 7 C -0.142 4.142 8 C 0.023 3.977 9 H 0.096 0.904 10 O -0.302 6.302 11 C -0.067 4.067 12 C -0.106 4.106 13 N -0.203 5.203 14 C -0.015 4.015 15 C -0.209 4.209 16 C -0.093 4.093 17 C -0.187 4.187 18 C 0.111 3.889 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.416 5.416 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.248 4.248 28 C -0.102 4.102 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.850 -16.291 -3.202 16.624 hybrid contribution 0.282 0.756 0.363 0.885 sum -0.568 -15.534 -2.838 15.802 Atomic orbital electron populations 1.23217 0.76601 1.03315 1.02621 1.86489 1.23173 1.33817 1.84758 1.23450 0.91447 0.81370 0.73284 1.90721 1.66339 1.36028 1.42609 1.22192 0.87987 0.93738 1.00346 0.89444 1.22273 0.96259 1.00146 0.95541 1.22904 0.84346 0.91300 0.99113 0.90426 1.87898 1.24562 1.51296 1.66480 1.22798 0.91238 0.99499 0.93138 1.23586 0.89904 1.00152 0.96940 1.65283 1.19364 1.11421 1.24259 1.20966 0.99911 0.94160 0.86430 1.18724 0.93609 0.91701 1.16834 1.20535 0.96648 0.93386 0.98715 1.21306 0.96974 0.93995 1.06433 1.17613 0.91144 0.92752 0.87387 1.19579 1.06157 0.91993 1.31638 0.90591 1.25904 0.93960 1.01455 0.92854 1.69841 1.15592 1.37484 1.18657 0.86359 0.78442 0.82111 0.80071 1.19564 1.20108 1.18500 1.20911 0.97358 0.92511 1.14022 1.20334 0.94160 0.95076 1.00652 0.91944 0.88328 0.91990 0.89861 0.88755 0.93979 0.93537 0.89760 0.88547 0.92548 0.95306 0.91261 0.89274 0.86573 0.90905 0.89242 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.51 10.57 -39.27 -0.41 -4.93 16 3 C 0.46 6.93 6.94 36.00 0.25 7.18 16 4 O -0.47 -8.80 15.61 -18.75 -0.29 -9.09 16 5 C 0.07 0.93 2.79 -67.22 -0.19 0.75 16 6 H 0.09 1.09 8.00 -51.93 -0.42 0.68 16 7 C -0.10 -1.23 6.35 -25.35 -0.16 -1.39 16 8 C 0.08 1.04 3.52 -25.35 -0.09 0.95 16 9 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 10 O -0.38 -4.71 10.31 -35.23 -0.36 -5.07 16 11 C 0.03 0.29 10.87 101.05 1.10 1.39 16 12 C 0.02 0.34 5.19 -2.20 -0.01 0.33 16 13 N -0.48 -8.13 4.62 -224.97 -1.04 -9.17 16 14 C 0.11 2.06 4.78 -4.97 -0.02 2.04 16 15 C -0.21 -4.59 5.12 -104.33 -0.53 -5.12 16 16 C -0.07 -1.81 9.67 -39.66 -0.38 -2.20 16 17 C -0.17 -4.49 8.70 -38.87 -0.34 -4.83 16 18 C 0.11 3.07 5.57 -106.83 -0.60 2.48 16 19 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 20 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 21 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 22 N -0.79 -20.91 10.95 55.55 0.61 -20.30 16 23 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 28 C -0.08 -1.85 8.68 -39.66 -0.34 -2.20 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.09 0.97 7.98 -51.93 -0.41 0.55 16 34 H 0.04 0.36 8.10 -51.93 -0.42 -0.06 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.67 7.81 -51.93 -0.41 1.26 16 38 H 0.06 0.85 7.76 -51.93 -0.40 0.45 16 39 H 0.03 0.49 7.82 -51.93 -0.41 0.08 16 40 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 41 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.08 1.60 8.05 -52.49 -0.42 1.18 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -30.54 373.44 -8.89 -39.43 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.92 Total: 5.82 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.07 Total: -16.20 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: -0.43 Total: -29.47 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.07 Total: -19.09 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.54 -8.89 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343545561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.030 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds