Wall clock time and date at job start Tue Mar 31 2020 12:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99867 * 2 1 4 4 O 1.20823 * 119.99737 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99793 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.46522 * 302.41044 * 5 3 2 7 7 C 1.54380 * 110.41164 * 64.82505 * 5 3 2 8 8 C 1.54256 * 105.06102 * 142.62962 * 7 5 3 9 9 H 1.09004 * 110.32685 * 241.10155 * 8 7 5 10 10 O 1.42901 * 110.32540 * 118.89544 * 8 7 5 11 11 C 1.42905 * 114.00038 * 152.90774 * 10 8 7 12 12 C 1.54382 * 105.06084 * 359.97438 * 8 7 5 13 13 N 1.48560 * 110.40842 * 179.97438 * 5 3 2 14 14 C 1.46896 * 111.00074 * 82.18510 * 13 5 3 15 15 C 1.50708 * 109.47163 * 185.29406 * 14 13 5 16 16 C 1.38629 * 119.75158 * 89.99614 * 15 14 13 17 17 C 1.37616 * 120.24685 * 179.97438 * 16 15 14 18 18 C 1.40714 * 119.74604 * 0.02562 * 17 16 15 19 19 C 1.41395 * 120.24112 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99568 * 155.58334 * 19 18 17 21 21 C 1.39946 * 120.00621 * 335.31228 * 19 18 17 22 22 N 1.30823 * 119.99390 * 342.55986 * 21 19 18 23 23 Si 1.86793 * 120.00145 * 162.56213 * 21 19 18 24 24 H 1.48504 * 109.47123 * 90.00063 * 23 21 19 25 25 H 1.48504 * 109.46771 * 209.99514 * 23 21 19 26 26 H 1.48495 * 109.47393 * 329.99926 * 23 21 19 27 27 C 1.40707 * 119.51119 * 0.26996 * 18 17 16 28 28 C 1.37627 * 119.74628 * 359.42829 * 27 18 17 29 29 H 1.08995 * 109.46925 * 60.00276 * 1 2 3 30 30 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47184 * 300.00288 * 1 2 3 32 32 H 1.09001 * 110.32483 * 23.73626 * 7 5 3 33 33 H 1.09003 * 110.32748 * 261.52341 * 7 5 3 34 34 H 1.08997 * 109.47316 * 300.00353 * 11 10 8 35 35 H 1.09003 * 109.47253 * 60.00356 * 11 10 8 36 36 H 1.09003 * 109.46971 * 180.02562 * 11 10 8 37 37 H 1.09007 * 110.41028 * 217.36946 * 12 8 7 38 38 H 1.08996 * 110.40854 * 94.93024 * 12 8 7 39 39 H 1.08994 * 109.47668 * 65.28756 * 14 13 5 40 40 H 1.08998 * 109.46657 * 305.28814 * 14 13 5 41 41 H 1.08007 * 119.87515 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.12717 * 180.02562 * 17 16 15 43 43 H 0.97002 * 119.99788 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12688 * 179.69910 * 27 18 17 45 45 H 1.07993 * 119.87846 * 180.27171 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9752 0.7485 0.8629 7 6 4.1367 0.6882 -1.3085 8 6 5.3408 1.5864 -1.6591 9 1 5.1839 2.0706 -2.6230 10 8 6.5448 0.8170 -1.6792 11 6 7.5565 1.3431 -2.5405 12 6 5.3962 2.6407 -0.5327 13 7 4.0108 2.6925 -0.0001 14 6 3.9898 3.2515 1.3581 15 6 4.3199 4.7209 1.3018 16 6 3.3015 5.6495 1.1518 17 6 3.5913 6.9937 1.0997 18 6 4.9273 7.4243 1.1987 19 6 5.2370 8.8029 1.1458 20 1 6.1467 9.1697 1.5979 21 6 4.3676 9.6913 0.5029 22 7 3.4665 9.2372 -0.3298 23 14 4.4939 11.5254 0.8335 24 1 5.4384 12.1390 -0.1344 25 1 3.1548 12.1491 0.6816 26 1 4.9889 11.7463 2.2160 27 6 5.9533 6.4725 1.3444 28 6 5.6397 5.1336 1.4004 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3888 0.7315 -2.1003 33 1 4.4641 -0.3396 -1.1517 34 1 7.1806 1.3788 -3.5630 35 1 7.8230 2.3490 -2.2160 36 1 8.4375 0.7024 -2.4998 37 1 5.6858 3.6117 -0.9348 38 1 6.0913 2.3282 0.2465 39 1 4.7269 2.7368 1.9743 40 1 2.9981 3.1182 1.7905 41 1 2.2768 5.3166 1.0756 42 1 2.7964 7.7155 0.9832 43 1 2.8637 9.8529 -0.7752 44 1 6.9825 6.7916 1.4165 45 1 6.4250 4.4015 1.5166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343545561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:57 Heat of formation + Delta-G solvation = -116.798222 kcal Electronic energy + Delta-G solvation = -27051.277253 eV Core-core repulsion = 23226.148209 eV Total energy + Delta-G solvation = -3825.129044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79865 -40.30802 -39.32977 -37.93813 -37.21299 -35.69689 -33.47836 -31.37999 -30.95339 -30.68444 -28.31151 -28.17821 -27.15654 -25.30692 -23.87478 -22.91645 -22.20092 -21.46400 -21.30364 -19.21070 -18.78798 -17.98081 -17.78052 -17.37210 -17.17878 -16.55447 -16.27502 -16.00319 -15.69538 -15.55089 -15.17961 -14.95889 -14.65491 -14.28336 -14.19154 -14.10665 -13.82582 -13.70321 -13.51751 -13.22535 -12.94233 -12.89356 -12.72778 -12.71298 -12.42965 -12.39198 -12.20555 -12.08349 -11.77836 -11.67959 -11.48078 -11.38321 -11.23316 -10.99412 -10.60643 -9.57703 -9.34240 -9.17555 -8.62749 -6.33186 0.93473 1.15826 1.16195 1.36782 1.46302 1.52608 1.61880 2.20247 2.57198 2.75717 3.26217 3.38515 3.48606 3.80654 3.86412 3.99675 4.13627 4.21581 4.27816 4.32702 4.33684 4.35826 4.51179 4.53970 4.57182 4.59288 4.70383 4.71549 4.75517 4.82959 4.84519 4.90850 4.99249 5.06617 5.15642 5.32710 5.37708 5.45863 5.64647 5.72516 5.86500 5.99748 6.11296 6.23329 6.29641 6.38896 6.71768 6.79013 6.94721 7.05023 8.33883 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.003437 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.261412 B = 8144.920082 C = 9507.037292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.519 6.519 5 C 0.068 3.932 6 H 0.110 0.890 7 C -0.095 4.095 8 C 0.089 3.911 9 H 0.079 0.921 10 O -0.390 6.390 11 C 0.023 3.977 12 C 0.024 3.976 13 N -0.502 5.502 14 C 0.120 3.880 15 C -0.194 4.194 16 C -0.084 4.084 17 C -0.191 4.191 18 C 0.082 3.918 19 C -0.502 4.502 20 H 0.076 0.924 21 C 0.034 3.966 22 N -0.827 5.827 23 Si 0.982 3.018 24 H -0.260 1.260 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.240 4.240 28 C -0.076 4.076 29 H 0.058 0.942 30 H 0.137 0.863 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.287 0.713 44 H 0.099 0.901 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -19.059 -2.959 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.407 6.407 5 C -0.042 4.042 6 H 0.128 0.872 7 C -0.133 4.133 8 C 0.030 3.970 9 H 0.097 0.903 10 O -0.308 6.308 11 C -0.073 4.073 12 C -0.104 4.104 13 N -0.229 5.229 14 C -0.007 4.007 15 C -0.196 4.196 16 C -0.103 4.103 17 C -0.211 4.211 18 C 0.080 3.920 19 C -0.531 4.531 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.453 5.453 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.192 1.192 26 H -0.182 1.182 27 C -0.260 4.260 28 C -0.095 4.095 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.066 -18.543 -3.340 18.841 hybrid contribution -0.021 1.225 0.384 1.284 sum 0.045 -17.318 -2.957 17.568 Atomic orbital electron populations 1.23531 0.74916 1.05741 1.02219 1.86481 1.24760 1.32210 1.83984 1.23696 0.91886 0.81360 0.71954 1.90715 1.67351 1.37608 1.44983 1.22302 0.87477 0.91953 1.02437 0.87229 1.22272 0.95699 1.00902 0.94414 1.22764 0.85176 0.90908 0.98115 0.90263 1.87885 1.24640 1.51137 1.67166 1.22988 0.91389 0.99595 0.93323 1.23527 0.89063 0.99834 0.97947 1.65056 1.20602 1.14066 1.23130 1.20812 1.00157 0.91777 0.87981 1.19116 0.93003 0.93679 1.13774 1.20652 0.97415 0.93159 0.99109 1.21220 0.96703 0.94605 1.08577 1.17937 0.91734 0.93770 0.88567 1.19844 1.07237 0.92777 1.33272 0.90542 1.26795 0.93117 1.06287 0.91901 1.69912 1.16490 1.39404 1.19518 0.85209 0.78817 0.75709 0.79988 1.18502 1.19240 1.18165 1.21148 0.97373 0.93381 1.14076 1.20616 0.95040 0.94773 0.99023 0.92353 0.84451 0.92512 0.89431 0.86426 0.92877 0.94225 0.87772 0.91166 0.91926 0.92915 0.91990 0.89453 0.88737 0.90296 0.88320 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.03 10.57 -51.47 -0.54 -8.58 16 3 C 0.47 13.33 6.94 71.23 0.49 13.82 16 4 O -0.52 -19.29 15.61 21.97 0.34 -18.95 16 5 C 0.07 1.72 2.79 44.32 0.12 1.85 16 6 H 0.11 2.34 8.00 -2.39 -0.02 2.32 16 7 C -0.10 -1.96 6.35 31.49 0.20 -1.76 16 8 C 0.09 2.07 3.52 31.49 0.11 2.18 16 9 H 0.08 1.81 7.85 -2.39 -0.02 1.79 16 10 O -0.39 -8.43 10.31 -148.98 -1.54 -9.97 16 11 C 0.02 0.39 10.87 113.37 1.23 1.62 16 12 C 0.02 0.70 5.19 86.46 0.45 1.15 16 13 N -0.50 -16.45 4.62 -865.68 -4.00 -20.45 16 14 C 0.12 4.26 4.78 85.56 0.41 4.67 16 15 C -0.19 -8.58 5.12 -19.67 -0.10 -8.68 16 16 C -0.08 -4.29 9.67 22.22 0.21 -4.08 16 17 C -0.19 -10.78 8.70 22.73 0.20 -10.59 16 18 C 0.08 4.62 5.57 -21.29 -0.12 4.50 16 19 C -0.50 -28.02 9.05 23.46 0.21 -27.81 16 20 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 21 C 0.03 1.76 5.15 85.26 0.44 2.20 16 22 N -0.83 -45.54 10.95 21.83 0.24 -45.30 16 23 Si 0.98 39.52 29.59 68.60 2.03 41.55 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 27 C -0.24 -12.00 9.80 22.73 0.22 -11.78 16 28 C -0.08 -3.32 8.68 22.22 0.19 -3.12 16 29 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.09 1.75 7.85 -2.39 -0.02 1.73 16 33 H 0.12 1.92 7.98 -2.39 -0.02 1.90 16 34 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 2.40 7.81 -2.38 -0.02 2.38 16 38 H 0.06 1.73 7.76 -2.39 -0.02 1.71 16 39 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 40 H 0.06 2.30 7.36 -2.39 -0.02 2.28 16 41 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.09 5.63 6.16 -2.91 -0.02 5.61 16 43 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 44 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 45 H 0.12 4.25 8.05 -2.91 -0.02 4.22 16 Total: -1.00 -68.94 373.44 2.98 -65.96 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.97 Total: 29.89 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 5.47 Total: -34.15 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -3.76 Total: -65.75 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.74 Total: -37.49 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -68.94 2.98 -65.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343545561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.843 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds