Wall clock time and date at job start Tue Mar 31 2020 12:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99846 * 2 1 4 4 O 1.20830 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47218 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.50246 * 55.08352 * 6 5 3 8 8 C 1.53096 * 109.50555 * 175.21571 * 6 5 3 9 9 N 1.47017 * 109.25704 * 176.78320 * 8 6 5 10 10 C 1.46896 * 110.99676 * 177.60721 * 9 8 6 11 11 C 1.50706 * 109.46766 * 189.68219 * 10 9 8 12 12 C 1.38630 * 119.75209 * 90.00056 * 11 10 9 13 13 C 1.37620 * 120.25072 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74290 * 359.97438 * 13 12 11 15 15 C 1.41392 * 120.24158 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99930 * 155.58789 * 15 14 13 17 17 C 1.39946 * 120.00456 * 335.31757 * 15 14 13 18 18 N 1.30827 * 119.99750 * 342.55579 * 17 15 14 19 19 Si 1.86793 * 120.00145 * 162.55587 * 17 15 14 20 20 H 1.48500 * 109.47265 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47352 * 119.99863 * 19 17 15 22 22 H 1.48500 * 109.47201 * 240.00187 * 19 17 15 23 23 C 1.40718 * 119.51094 * 0.28022 * 14 13 12 24 24 C 1.37616 * 119.74516 * 359.46561 * 23 14 13 25 25 C 1.47010 * 110.75196 * 301.38317 * 9 8 6 26 26 C 1.53102 * 109.25880 * 58.61532 * 25 9 8 27 27 O 1.43015 * 109.25739 * 303.15107 * 26 25 9 28 28 H 1.09007 * 109.47019 * 299.99434 * 1 2 3 29 29 H 1.08992 * 109.47439 * 60.00398 * 1 2 3 30 30 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99751 * 5 3 2 32 32 H 1.09007 * 109.46675 * 300.00023 * 5 3 2 33 33 H 1.09002 * 109.50821 * 56.84351 * 8 6 5 34 34 H 1.09005 * 109.50680 * 296.71714 * 8 6 5 35 35 H 1.08991 * 109.47525 * 69.68687 * 10 9 8 36 36 H 1.09005 * 109.47392 * 309.67555 * 10 9 8 37 37 H 1.08005 * 119.87533 * 0.02562 * 12 11 10 38 38 H 1.08001 * 120.13122 * 180.02562 * 13 12 11 39 39 H 0.96989 * 120.00028 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.12333 * 179.69941 * 23 14 13 41 41 H 1.07994 * 119.87881 * 180.27182 * 24 23 14 42 42 H 1.08995 * 109.50849 * 178.54961 * 25 9 8 43 43 H 1.09002 * 109.50935 * 298.63870 * 25 9 8 44 44 H 1.08995 * 109.50368 * 63.08694 * 26 25 9 45 45 H 1.08999 * 109.50453 * 183.17393 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5396 3.2581 0.8414 8 6 5.5241 2.8247 0.1187 9 7 5.9411 4.2323 0.0401 10 6 7.3948 4.3608 0.2080 11 6 7.7562 5.8159 0.3599 12 6 7.7916 6.3878 1.6223 13 6 8.1198 7.7158 1.7728 14 6 8.4207 8.4934 0.6393 15 6 8.7597 9.8587 0.7818 16 1 9.3539 10.3494 0.0251 17 6 8.3207 10.5757 1.9006 18 7 7.3379 10.1130 2.6297 19 14 9.1380 12.1933 2.3530 20 1 10.2150 12.4940 1.3758 21 1 8.1286 13.2822 2.3270 22 1 9.7197 12.0900 3.7154 23 6 8.3763 7.9037 -0.6376 24 6 8.0507 6.5726 -0.7639 25 6 5.5016 4.8359 -1.2263 26 6 3.9777 4.7331 -1.3326 27 8 3.5887 3.3613 -1.2229 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 5.9841 2.2629 -0.6943 34 1 5.8373 2.4051 1.0747 35 1 7.8992 3.9507 -0.6668 36 1 7.7076 3.8140 1.0976 37 1 7.5607 5.7889 2.4909 38 1 8.1472 8.1593 2.7572 39 1 7.0338 10.6097 3.4052 40 1 8.6007 8.4925 -1.5147 41 1 8.0203 6.1167 -1.7424 42 1 5.7983 5.8843 -1.2521 43 1 5.9618 4.3067 -2.0608 44 1 3.5173 5.3075 -0.5288 45 1 3.6526 5.1285 -2.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343553028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:53 Heat of formation + Delta-G solvation = -108.945204 kcal Electronic energy + Delta-G solvation = -26422.772669 eV Core-core repulsion = 22597.984157 eV Total energy + Delta-G solvation = -3824.788512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68502 -39.45455 -37.68260 -36.62218 -35.45984 -33.59422 -33.11521 -30.53358 -29.45499 -29.17507 -28.01874 -27.01930 -25.06603 -23.62183 -22.72696 -21.01372 -20.89628 -20.22643 -19.70508 -17.72209 -17.30055 -16.98472 -16.79416 -16.04921 -15.98897 -15.36420 -14.99240 -14.68785 -14.62208 -14.05313 -13.78716 -13.70084 -13.55600 -13.38129 -13.22312 -12.57173 -12.35265 -12.33143 -12.15125 -11.94777 -11.64785 -11.53898 -11.33924 -11.17988 -11.04787 -10.99616 -10.83514 -10.63278 -10.54356 -10.38381 -10.34427 -9.71067 -9.39825 -9.35347 -9.13104 -8.04767 -7.44455 -7.29277 -6.75949 -4.35395 2.10220 2.48142 2.72589 3.05957 3.07605 3.12119 3.15511 3.71516 3.92784 4.12986 4.52223 4.65207 4.73607 4.86308 4.92426 4.99373 5.07138 5.14954 5.24217 5.28206 5.35310 5.44337 5.58713 5.66531 5.74107 5.78728 5.91464 5.94419 6.15595 6.16871 6.21041 6.25262 6.33963 6.42337 6.95309 7.06602 7.20047 7.27439 7.30619 7.35845 7.40162 7.61378 7.62130 7.86743 8.05666 8.13633 8.30000 8.64771 8.89522 8.97681 10.18215 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.002381 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.378775 B =11755.578799 C =12139.318492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.461 3.539 4 O -0.490 6.490 5 C -0.105 4.105 6 C 0.105 3.895 7 H 0.076 0.924 8 C 0.024 3.976 9 N -0.528 5.528 10 C 0.122 3.878 11 C -0.209 4.209 12 C -0.079 4.079 13 C -0.167 4.167 14 C 0.112 3.888 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.791 5.791 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.227 4.227 24 C -0.085 4.085 25 C 0.019 3.981 26 C 0.068 3.932 27 O -0.379 6.379 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 -17.005 -3.158 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.302 3.698 4 O -0.375 6.375 5 C -0.143 4.143 6 C 0.046 3.954 7 H 0.094 0.906 8 C -0.105 4.105 9 N -0.253 5.253 10 C -0.004 4.004 11 C -0.211 4.211 12 C -0.098 4.098 13 C -0.186 4.186 14 C 0.109 3.891 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.416 5.416 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.247 4.247 24 C -0.104 4.104 25 C -0.109 4.109 26 C -0.009 4.009 27 O -0.298 6.298 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.532 -16.481 -2.716 18.756 hybrid contribution 0.562 0.569 -0.231 0.832 sum -7.970 -15.913 -2.947 18.039 Atomic orbital electron populations 1.23232 0.76447 1.03465 1.02615 1.86492 1.23406 1.33806 1.84600 1.23614 0.92027 0.81325 0.72792 1.90716 1.66896 1.36131 1.43797 1.21419 0.88176 0.98193 1.06542 1.21846 0.93392 0.90911 0.89219 0.90557 1.22728 0.94933 0.91077 1.01719 1.62309 1.15481 1.13414 1.34118 1.20752 0.84876 0.95705 0.99081 1.18815 1.14650 0.93832 0.93814 1.20481 0.99291 0.95125 0.94871 1.21312 1.05934 0.92228 0.99164 1.17630 0.87851 0.92928 0.90641 1.19626 1.29477 0.94978 1.05115 0.90491 1.25915 0.93283 0.99783 0.95270 1.69838 1.19370 1.38241 1.14142 0.86291 0.80181 0.81145 0.79283 1.18431 1.20016 1.19709 1.20939 1.12434 0.94816 0.96463 1.20353 1.00246 0.94287 0.95505 1.22822 0.95639 1.02412 0.90030 1.22657 0.93694 0.82257 1.02271 1.87932 1.78594 1.25407 1.37856 0.91940 0.91909 0.88253 0.86938 0.86171 0.94307 0.89792 0.95749 0.91509 0.89528 0.86522 0.90923 0.89173 0.89945 0.88149 0.94817 0.92087 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.37 -3.70 10.57 -39.26 -0.41 -4.11 16 3 C 0.46 5.42 7.84 36.01 0.28 5.71 16 4 O -0.49 -7.49 15.17 -24.04 -0.36 -7.85 16 5 C -0.11 -0.99 5.53 -27.88 -0.15 -1.15 16 6 C 0.10 1.34 2.35 -26.68 -0.06 1.27 16 7 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 8 C 0.02 0.30 4.93 -3.71 -0.02 0.29 16 9 N -0.53 -8.55 4.72 -235.75 -1.11 -9.67 16 10 C 0.12 2.08 5.11 -4.98 -0.03 2.06 16 11 C -0.21 -4.41 4.91 -104.33 -0.51 -4.92 16 12 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 13 C -0.17 -4.31 8.70 -38.87 -0.34 -4.64 16 14 C 0.11 2.96 5.57 -106.82 -0.60 2.37 16 15 C -0.46 -12.23 9.05 -37.74 -0.34 -12.58 16 16 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 17 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 18 N -0.79 -20.49 10.95 55.55 0.61 -19.88 16 19 Si 0.91 18.64 29.59 -169.99 -5.03 13.60 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 24 C -0.09 -1.84 7.88 -39.66 -0.31 -2.16 16 25 C 0.02 0.30 5.26 -3.71 -0.02 0.28 16 26 C 0.07 1.01 7.01 37.21 0.26 1.27 16 27 O -0.38 -5.67 9.71 -49.61 -0.48 -6.15 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 37 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 38 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.08 1.59 8.00 -52.49 -0.42 1.17 16 42 H 0.10 1.81 6.00 -51.93 -0.31 1.50 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -30.36 369.16 -9.78 -40.14 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.92 Total: 5.47 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.62 Total: -17.12 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: -0.50 Total: -29.54 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.26 Total: -18.12 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.36 -9.78 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343553028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.805 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds