Wall clock time and date at job start Tue Mar 31 2020 12:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99846 * 2 1 4 4 O 1.20830 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47218 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.50246 * 55.08352 * 6 5 3 8 8 C 1.53096 * 109.50555 * 175.21571 * 6 5 3 9 9 N 1.47017 * 109.25704 * 176.78320 * 8 6 5 10 10 C 1.46896 * 110.99676 * 177.60721 * 9 8 6 11 11 C 1.50706 * 109.46766 * 189.68219 * 10 9 8 12 12 C 1.38630 * 119.75209 * 90.00056 * 11 10 9 13 13 C 1.37620 * 120.25072 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74290 * 359.97438 * 13 12 11 15 15 C 1.41392 * 120.24158 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99930 * 155.58789 * 15 14 13 17 17 C 1.39946 * 120.00456 * 335.31757 * 15 14 13 18 18 N 1.30827 * 119.99750 * 342.55579 * 17 15 14 19 19 Si 1.86793 * 120.00145 * 162.55587 * 17 15 14 20 20 H 1.48500 * 109.47265 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47352 * 119.99863 * 19 17 15 22 22 H 1.48500 * 109.47201 * 240.00187 * 19 17 15 23 23 C 1.40718 * 119.51094 * 0.28022 * 14 13 12 24 24 C 1.37616 * 119.74516 * 359.46561 * 23 14 13 25 25 C 1.47010 * 110.75196 * 301.38317 * 9 8 6 26 26 C 1.53102 * 109.25880 * 58.61532 * 25 9 8 27 27 O 1.43015 * 109.25739 * 303.15107 * 26 25 9 28 28 H 1.09007 * 109.47019 * 299.99434 * 1 2 3 29 29 H 1.08992 * 109.47439 * 60.00398 * 1 2 3 30 30 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99751 * 5 3 2 32 32 H 1.09007 * 109.46675 * 300.00023 * 5 3 2 33 33 H 1.09002 * 109.50821 * 56.84351 * 8 6 5 34 34 H 1.09005 * 109.50680 * 296.71714 * 8 6 5 35 35 H 1.08991 * 109.47525 * 69.68687 * 10 9 8 36 36 H 1.09005 * 109.47392 * 309.67555 * 10 9 8 37 37 H 1.08005 * 119.87533 * 0.02562 * 12 11 10 38 38 H 1.08001 * 120.13122 * 180.02562 * 13 12 11 39 39 H 0.96989 * 120.00028 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.12333 * 179.69941 * 23 14 13 41 41 H 1.07994 * 119.87881 * 180.27182 * 24 23 14 42 42 H 1.08995 * 109.50849 * 178.54961 * 25 9 8 43 43 H 1.09002 * 109.50935 * 298.63870 * 25 9 8 44 44 H 1.08995 * 109.50368 * 63.08694 * 26 25 9 45 45 H 1.08999 * 109.50453 * 183.17393 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5396 3.2581 0.8414 8 6 5.5241 2.8247 0.1187 9 7 5.9411 4.2323 0.0401 10 6 7.3948 4.3608 0.2080 11 6 7.7562 5.8159 0.3599 12 6 7.7916 6.3878 1.6223 13 6 8.1198 7.7158 1.7728 14 6 8.4207 8.4934 0.6393 15 6 8.7597 9.8587 0.7818 16 1 9.3539 10.3494 0.0251 17 6 8.3207 10.5757 1.9006 18 7 7.3379 10.1130 2.6297 19 14 9.1380 12.1933 2.3530 20 1 10.2150 12.4940 1.3758 21 1 8.1286 13.2822 2.3270 22 1 9.7197 12.0900 3.7154 23 6 8.3763 7.9037 -0.6376 24 6 8.0507 6.5726 -0.7639 25 6 5.5016 4.8359 -1.2263 26 6 3.9777 4.7331 -1.3326 27 8 3.5887 3.3613 -1.2229 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 5.9841 2.2629 -0.6943 34 1 5.8373 2.4051 1.0747 35 1 7.8992 3.9507 -0.6668 36 1 7.7076 3.8140 1.0976 37 1 7.5607 5.7889 2.4909 38 1 8.1472 8.1593 2.7572 39 1 7.0338 10.6097 3.4052 40 1 8.6007 8.4925 -1.5147 41 1 8.0203 6.1167 -1.7424 42 1 5.7983 5.8843 -1.2521 43 1 5.9618 4.3067 -2.0608 44 1 3.5173 5.3075 -0.5288 45 1 3.6526 5.1285 -2.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343553028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:52 Heat of formation + Delta-G solvation = -126.723105 kcal Electronic energy + Delta-G solvation = -26423.543577 eV Core-core repulsion = 22597.984157 eV Total energy + Delta-G solvation = -3825.559419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59092 -40.60278 -39.36848 -37.54609 -36.82069 -35.34791 -34.09722 -32.23872 -31.14311 -30.36105 -29.25064 -28.07837 -26.50937 -24.89754 -24.02062 -22.82254 -21.99422 -21.36060 -21.26034 -19.20500 -18.59649 -17.90225 -17.66432 -17.22952 -17.15979 -16.95872 -16.32746 -16.01187 -15.73365 -15.64704 -15.24121 -14.99373 -14.78256 -14.48549 -14.29288 -14.14331 -13.78355 -13.52414 -13.21372 -13.16582 -13.01418 -12.88523 -12.77784 -12.69876 -12.40593 -12.25439 -12.20842 -11.96772 -11.78295 -11.62449 -11.49147 -11.40522 -11.21392 -10.99980 -10.57995 -9.33751 -9.31264 -9.08340 -8.62181 -6.32041 0.95451 1.17247 1.23426 1.37369 1.48703 1.52688 1.75302 2.20782 2.65120 2.72016 3.07862 3.69358 3.76032 3.80090 4.00857 4.10322 4.13683 4.24205 4.31430 4.32596 4.34460 4.37020 4.48821 4.53619 4.59667 4.63477 4.66775 4.68453 4.73358 4.81698 4.89555 4.97899 5.03810 5.09066 5.17404 5.40633 5.40971 5.48790 5.73208 5.94075 6.03208 6.12724 6.14588 6.24085 6.31278 6.41665 6.73706 6.77378 6.96346 7.06678 8.34462 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.002381 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.378775 B =11755.578799 C =12139.318492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.535 6.535 5 C -0.098 4.098 6 C 0.101 3.899 7 H 0.052 0.948 8 C 0.028 3.972 9 N -0.549 5.549 10 C 0.128 3.872 11 C -0.194 4.194 12 C -0.085 4.085 13 C -0.192 4.192 14 C 0.078 3.922 15 C -0.502 4.502 16 H 0.073 0.927 17 C 0.033 3.967 18 N -0.827 5.827 19 Si 0.981 3.019 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.243 4.243 24 C -0.082 4.082 25 C 0.025 3.975 26 C 0.072 3.928 27 O -0.389 6.389 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -19.645 -3.559 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.424 6.424 5 C -0.135 4.135 6 C 0.043 3.957 7 H 0.070 0.930 8 C -0.099 4.099 9 N -0.274 5.274 10 C 0.001 3.999 11 C -0.195 4.195 12 C -0.104 4.104 13 C -0.211 4.211 14 C 0.076 3.924 15 C -0.532 4.532 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.453 5.453 19 Si 0.802 3.198 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.188 1.188 23 C -0.263 4.263 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.005 4.005 27 O -0.308 6.308 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.300 -19.165 -3.125 21.118 hybrid contribution 0.373 1.174 -0.158 1.242 sum -7.927 -17.992 -3.283 19.933 Atomic orbital electron populations 1.23495 0.75179 1.05586 1.02173 1.86488 1.24703 1.32833 1.84025 1.24117 0.92984 0.81070 0.71439 1.90707 1.68022 1.37593 1.46099 1.21500 0.86567 0.96104 1.09319 1.21967 0.93544 0.92602 0.87607 0.92954 1.22795 0.94512 0.88942 1.03669 1.62162 1.14673 1.16158 1.34435 1.20686 0.85803 0.92635 1.00739 1.19276 1.11524 0.96108 0.92597 1.20733 0.98778 0.94307 0.96603 1.21272 1.07964 0.93625 0.98270 1.17968 0.89117 0.93575 0.91759 1.19846 1.31121 0.95681 1.06528 0.90920 1.26758 0.93348 1.03356 0.94643 1.69897 1.20521 1.40045 1.14821 0.85177 0.79074 0.76497 0.79047 1.18190 1.19167 1.18830 1.21144 1.13000 0.96260 0.95872 1.20649 0.98856 0.93366 0.97191 1.22705 0.96141 1.00963 0.90531 1.22591 0.93076 0.82510 1.02345 1.87931 1.78897 1.25033 1.38943 0.92296 0.92545 0.84853 0.84745 0.82499 0.92508 0.87492 0.94083 0.89744 0.87852 0.88512 0.90285 0.88871 0.87057 0.90819 0.93577 0.94195 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -6.54 10.57 -51.42 -0.54 -7.08 16 3 C 0.46 10.01 7.84 71.24 0.56 10.57 16 4 O -0.54 -16.21 15.17 27.01 0.41 -15.80 16 5 C -0.10 -1.51 5.53 29.85 0.16 -1.34 16 6 C 0.10 2.35 2.35 30.63 0.07 2.42 16 7 H 0.05 1.47 7.96 -2.39 -0.02 1.45 16 8 C 0.03 0.61 4.93 86.31 0.43 1.04 16 9 N -0.55 -16.37 4.72 -899.78 -4.25 -20.62 16 10 C 0.13 3.95 5.11 85.56 0.44 4.38 16 11 C -0.19 -7.88 4.91 -19.67 -0.10 -7.98 16 12 C -0.09 -3.94 9.67 22.22 0.21 -3.72 16 13 C -0.19 -10.26 8.70 22.73 0.20 -10.07 16 14 C 0.08 4.30 5.57 -21.29 -0.12 4.18 16 15 C -0.50 -27.78 9.05 23.46 0.21 -27.57 16 16 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 17 C 0.03 1.73 5.15 85.26 0.44 2.17 16 18 N -0.83 -44.54 10.95 21.83 0.24 -44.30 16 19 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.24 -12.02 9.80 22.73 0.22 -11.79 16 24 C -0.08 -3.48 7.88 22.22 0.18 -3.31 16 25 C 0.02 0.75 5.26 86.32 0.45 1.20 16 26 C 0.07 2.08 7.01 72.02 0.50 2.59 16 27 O -0.39 -11.06 9.71 -135.24 -1.31 -12.37 16 28 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 29 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.16 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.84 8.09 -2.38 -0.02 1.82 16 35 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 36 H 0.08 2.35 7.98 -2.38 -0.02 2.33 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 39 H 0.29 13.94 8.30 -92.72 -0.77 13.18 16 40 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.11 4.04 8.00 -2.91 -0.02 4.02 16 42 H 0.07 2.61 6.00 -2.39 -0.01 2.60 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -69.31 369.16 2.61 -66.70 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.97 Total: 27.91 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 5.06 Total: -35.64 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -4.01 Total: -64.92 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.45 Total: -35.25 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -69.31 2.61 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343553028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.020 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds