Wall clock time and date at job start Tue Mar 31 2020 12:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00002 * 2 1 4 4 O 1.20832 * 119.99807 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00232 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47225 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.50884 * 305.09020 * 6 5 3 8 8 C 1.53100 * 109.50859 * 185.00023 * 6 5 3 9 9 N 1.47016 * 109.26064 * 183.21864 * 8 6 5 10 10 C 1.46897 * 111.00024 * 182.39426 * 9 8 6 11 11 C 1.50689 * 109.47120 * 170.00113 * 10 9 8 12 12 C 1.38639 * 119.74864 * 269.72627 * 11 10 9 13 13 C 1.37622 * 120.24577 * 179.72107 * 12 11 10 14 14 C 1.40712 * 119.74590 * 0.57121 * 13 12 11 15 15 C 1.41400 * 120.24288 * 179.68147 * 14 13 12 16 16 H 1.08000 * 119.99787 * 155.31802 * 15 14 13 17 17 C 1.39936 * 120.00028 * 335.31243 * 15 14 13 18 18 N 1.30826 * 120.00270 * 342.23261 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 162.23370 * 17 15 14 20 20 H 1.48506 * 109.47357 * 94.66098 * 19 17 15 21 21 H 1.48503 * 109.47479 * 214.66132 * 19 17 15 22 22 H 1.48502 * 109.47165 * 334.66180 * 19 17 15 23 23 C 1.40714 * 119.51447 * 359.70593 * 14 13 12 24 24 C 1.37626 * 119.74231 * 359.97438 * 23 14 13 25 25 C 1.47017 * 110.75034 * 58.61879 * 9 8 6 26 26 C 1.53100 * 109.25687 * 301.38330 * 25 9 8 27 27 O 1.43014 * 109.26149 * 56.85002 * 26 25 9 28 28 H 1.09002 * 109.46974 * 60.00008 * 1 2 3 29 29 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47601 * 300.00080 * 1 2 3 31 31 H 1.09005 * 109.46526 * 60.00208 * 5 3 2 32 32 H 1.08995 * 109.47099 * 300.00250 * 5 3 2 33 33 H 1.08998 * 109.50684 * 303.15612 * 8 6 5 34 34 H 1.09001 * 109.50383 * 63.28430 * 8 6 5 35 35 H 1.08997 * 109.46982 * 290.00333 * 10 9 8 36 36 H 1.09002 * 109.46836 * 49.99976 * 10 9 8 37 37 H 1.08002 * 119.87548 * 359.97438 * 12 11 10 38 38 H 1.08003 * 120.12483 * 180.28037 * 13 12 11 39 39 H 0.97008 * 120.00134 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.13161 * 180.02562 * 23 14 13 41 41 H 1.07998 * 119.87209 * 180.02562 * 24 23 14 42 42 H 1.08997 * 109.50807 * 61.31706 * 25 9 8 43 43 H 1.08997 * 109.50101 * 181.40456 * 25 9 8 44 44 H 1.08996 * 109.50176 * 176.78362 * 26 25 9 45 45 H 1.09002 * 109.50857 * 296.91489 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5372 3.2581 -0.8414 8 6 5.5237 2.8247 -0.1254 9 7 5.9410 4.2323 -0.0480 10 6 7.3941 4.3608 -0.2211 11 6 7.7541 5.8152 -0.3818 12 6 7.7907 6.3790 -1.6478 13 6 8.1126 7.7077 -1.8059 14 6 8.4169 8.4914 -0.6776 15 6 8.7556 9.8559 -0.8285 16 1 8.6023 10.5440 -0.0103 17 6 9.2895 10.3147 -2.0379 18 7 9.7974 9.4647 -2.8930 19 14 9.2772 12.1407 -2.4314 20 1 10.5746 12.7422 -2.0309 21 1 9.0724 12.3315 -3.8898 22 1 8.1748 12.8002 -1.6863 23 6 8.3822 7.9071 0.6021 24 6 8.0512 6.5781 0.7371 25 6 5.5060 4.8356 1.2202 26 6 3.9826 4.7328 1.3319 27 8 3.5930 3.3610 1.2232 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 5.9865 2.2627 0.6858 34 1 5.8335 2.4053 -1.0826 35 1 7.9015 3.9555 0.6543 36 1 7.7044 3.8094 -1.1087 37 1 7.5618 5.7743 -2.5129 38 1 8.1361 8.1460 -2.7927 39 1 10.1678 9.7828 -3.7312 40 1 8.6136 8.4994 1.4750 41 1 8.0236 6.1276 1.7182 42 1 5.9686 4.3057 2.0528 43 1 5.8037 5.8838 1.2454 44 1 3.6610 5.1272 2.2957 45 1 3.5192 5.3073 0.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343553029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:58 Heat of formation + Delta-G solvation = -109.158019 kcal Electronic energy + Delta-G solvation = -26357.522489 eV Core-core repulsion = 22532.724749 eV Total energy + Delta-G solvation = -3824.797740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70685 -39.47934 -37.68852 -36.64273 -35.47815 -33.60052 -33.13988 -30.54287 -29.47204 -29.18525 -28.03490 -27.03242 -25.07932 -23.64531 -22.73969 -21.01846 -20.91323 -20.25157 -19.71200 -17.74319 -17.30274 -17.00825 -16.81468 -16.07710 -16.01213 -15.35928 -15.01731 -14.71167 -14.64660 -14.05838 -13.80429 -13.71469 -13.57547 -13.39299 -13.23944 -12.58437 -12.36585 -12.34824 -12.15621 -11.95015 -11.68270 -11.56697 -11.24030 -11.20642 -11.05088 -11.01613 -10.97066 -10.65899 -10.50637 -10.40063 -10.36638 -9.71971 -9.40506 -9.37158 -9.13251 -8.06901 -7.44485 -7.30105 -6.77012 -4.35320 2.07993 2.46251 2.72993 3.05722 3.07294 3.10113 3.17016 3.68733 3.92550 4.11299 4.50016 4.64325 4.71870 4.84546 4.90554 4.97313 5.04601 5.12845 5.21479 5.26224 5.33037 5.42306 5.55963 5.64188 5.73181 5.77577 5.88867 5.93443 6.12454 6.14892 6.18941 6.22864 6.34206 6.42470 6.95041 7.06099 7.17381 7.25658 7.29822 7.33162 7.39223 7.59899 7.61196 7.86483 8.05286 8.13413 8.29746 8.64301 8.89251 8.97441 10.17573 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.002290 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.739048 B =12223.798597 C =12381.919312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.461 3.539 4 O -0.491 6.491 5 C -0.106 4.106 6 C 0.105 3.895 7 H 0.076 0.924 8 C 0.024 3.976 9 N -0.529 5.529 10 C 0.122 3.878 11 C -0.209 4.209 12 C -0.078 4.078 13 C -0.167 4.167 14 C 0.113 3.887 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.227 4.227 24 C -0.085 4.085 25 C 0.018 3.982 26 C 0.068 3.932 27 O -0.379 6.379 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 -16.125 3.558 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.376 6.376 5 C -0.144 4.144 6 C 0.047 3.953 7 H 0.094 0.906 8 C -0.105 4.105 9 N -0.253 5.253 10 C -0.004 4.004 11 C -0.211 4.211 12 C -0.097 4.097 13 C -0.186 4.186 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.247 4.247 24 C -0.104 4.104 25 C -0.110 4.110 26 C -0.009 4.009 27 O -0.298 6.298 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.701 -15.678 3.088 19.805 hybrid contribution 0.505 0.582 0.234 0.806 sum -11.196 -15.096 3.322 19.086 Atomic orbital electron populations 1.23233 0.76435 1.03483 1.02608 1.86492 1.23414 1.33793 1.84577 1.23615 0.92026 0.81325 0.72760 1.90712 1.66906 1.36140 1.43857 1.21419 0.88172 0.98187 1.06579 1.21847 0.93434 0.90925 0.89131 0.90569 1.22731 0.94904 0.91078 1.01782 1.62317 1.15689 1.13461 1.33881 1.20747 0.84797 0.95751 0.99145 1.18797 1.14742 0.93836 0.93698 1.20481 0.99260 0.95242 0.94763 1.21303 1.04680 0.93233 0.99423 1.17624 0.87530 0.92975 0.90858 1.19591 1.36899 0.94271 0.98439 0.90514 1.25908 0.92649 1.00070 0.95548 1.69830 1.26839 1.36615 1.08487 0.86337 0.79561 0.82616 0.78434 1.19616 1.20029 1.18429 1.20934 1.12340 0.94454 0.96946 1.20352 1.00142 0.94352 0.95522 1.22826 0.95639 1.02386 0.90112 1.22657 0.93689 0.82306 1.02209 1.87937 1.78741 1.25391 1.37711 0.91943 0.88239 0.91906 0.86156 0.86908 0.94269 0.89758 0.95717 0.91467 0.89529 0.86566 0.90902 0.89165 0.89941 0.94773 0.88193 0.88727 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.37 -3.61 10.57 -39.25 -0.41 -4.03 16 3 C 0.46 5.29 7.84 36.01 0.28 5.57 16 4 O -0.49 -7.31 15.18 -24.00 -0.36 -7.68 16 5 C -0.11 -0.97 5.52 -27.89 -0.15 -1.12 16 6 C 0.11 1.30 2.35 -26.68 -0.06 1.24 16 7 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 8 C 0.02 0.29 4.93 -3.71 -0.02 0.27 16 9 N -0.53 -8.35 4.72 -235.76 -1.11 -9.46 16 10 C 0.12 2.08 5.11 -4.98 -0.03 2.05 16 11 C -0.21 -4.40 4.92 -104.33 -0.51 -4.91 16 12 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 13 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 14 C 0.11 2.98 5.57 -106.82 -0.60 2.39 16 15 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 17 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 18 N -0.79 -20.42 10.97 55.55 0.61 -19.81 16 19 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 24 C -0.08 -1.84 7.89 -39.66 -0.31 -2.15 16 25 C 0.02 0.28 5.27 -3.71 -0.02 0.26 16 26 C 0.07 0.97 7.01 37.21 0.26 1.23 16 27 O -0.38 -5.50 9.72 -49.43 -0.48 -5.98 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.12 3.11 6.18 -52.48 -0.32 2.79 16 39 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 40 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.08 1.59 7.99 -52.49 -0.42 1.17 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 1.72 6.00 -51.93 -0.31 1.41 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -30.23 369.20 -9.77 -40.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.92 Total: 5.09 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.62 Total: -17.31 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: -0.50 Total: -29.27 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.26 Total: -17.68 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.23 -9.77 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343553029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.150 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds