Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00002 * 2 1 4 4 O 1.20832 * 119.99807 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00232 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47225 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.50884 * 305.09020 * 6 5 3 8 8 C 1.53100 * 109.50859 * 185.00023 * 6 5 3 9 9 N 1.47016 * 109.26064 * 183.21864 * 8 6 5 10 10 C 1.46897 * 111.00024 * 182.39426 * 9 8 6 11 11 C 1.50689 * 109.47120 * 170.00113 * 10 9 8 12 12 C 1.38639 * 119.74864 * 269.72627 * 11 10 9 13 13 C 1.37622 * 120.24577 * 179.72107 * 12 11 10 14 14 C 1.40712 * 119.74590 * 0.57121 * 13 12 11 15 15 C 1.41400 * 120.24288 * 179.68147 * 14 13 12 16 16 H 1.08000 * 119.99787 * 155.31802 * 15 14 13 17 17 C 1.39936 * 120.00028 * 335.31243 * 15 14 13 18 18 N 1.30826 * 120.00270 * 342.23261 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 162.23370 * 17 15 14 20 20 H 1.48506 * 109.47357 * 94.66098 * 19 17 15 21 21 H 1.48503 * 109.47479 * 214.66132 * 19 17 15 22 22 H 1.48502 * 109.47165 * 334.66180 * 19 17 15 23 23 C 1.40714 * 119.51447 * 359.70593 * 14 13 12 24 24 C 1.37626 * 119.74231 * 359.97438 * 23 14 13 25 25 C 1.47017 * 110.75034 * 58.61879 * 9 8 6 26 26 C 1.53100 * 109.25687 * 301.38330 * 25 9 8 27 27 O 1.43014 * 109.26149 * 56.85002 * 26 25 9 28 28 H 1.09002 * 109.46974 * 60.00008 * 1 2 3 29 29 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47601 * 300.00080 * 1 2 3 31 31 H 1.09005 * 109.46526 * 60.00208 * 5 3 2 32 32 H 1.08995 * 109.47099 * 300.00250 * 5 3 2 33 33 H 1.08998 * 109.50684 * 303.15612 * 8 6 5 34 34 H 1.09001 * 109.50383 * 63.28430 * 8 6 5 35 35 H 1.08997 * 109.46982 * 290.00333 * 10 9 8 36 36 H 1.09002 * 109.46836 * 49.99976 * 10 9 8 37 37 H 1.08002 * 119.87548 * 359.97438 * 12 11 10 38 38 H 1.08003 * 120.12483 * 180.28037 * 13 12 11 39 39 H 0.97008 * 120.00134 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.13161 * 180.02562 * 23 14 13 41 41 H 1.07998 * 119.87209 * 180.02562 * 24 23 14 42 42 H 1.08997 * 109.50807 * 61.31706 * 25 9 8 43 43 H 1.08997 * 109.50101 * 181.40456 * 25 9 8 44 44 H 1.08996 * 109.50176 * 176.78362 * 26 25 9 45 45 H 1.09002 * 109.50857 * 296.91489 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5372 3.2581 -0.8414 8 6 5.5237 2.8247 -0.1254 9 7 5.9410 4.2323 -0.0480 10 6 7.3941 4.3608 -0.2211 11 6 7.7541 5.8152 -0.3818 12 6 7.7907 6.3790 -1.6478 13 6 8.1126 7.7077 -1.8059 14 6 8.4169 8.4914 -0.6776 15 6 8.7556 9.8559 -0.8285 16 1 8.6023 10.5440 -0.0103 17 6 9.2895 10.3147 -2.0379 18 7 9.7974 9.4647 -2.8930 19 14 9.2772 12.1407 -2.4314 20 1 10.5746 12.7422 -2.0309 21 1 9.0724 12.3315 -3.8898 22 1 8.1748 12.8002 -1.6863 23 6 8.3822 7.9071 0.6021 24 6 8.0512 6.5781 0.7371 25 6 5.5060 4.8356 1.2202 26 6 3.9826 4.7328 1.3319 27 8 3.5930 3.3610 1.2232 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 5.9865 2.2627 0.6858 34 1 5.8335 2.4053 -1.0826 35 1 7.9015 3.9555 0.6543 36 1 7.7044 3.8094 -1.1087 37 1 7.5618 5.7743 -2.5129 38 1 8.1361 8.1460 -2.7927 39 1 10.1678 9.7828 -3.7312 40 1 8.6136 8.4994 1.4750 41 1 8.0236 6.1276 1.7182 42 1 5.9686 4.3057 2.0528 43 1 5.8037 5.8838 1.2454 44 1 3.6610 5.1272 2.2957 45 1 3.5192 5.3073 0.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343553029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = -126.731454 kcal Electronic energy + Delta-G solvation = -26358.284530 eV Core-core repulsion = 22532.724749 eV Total energy + Delta-G solvation = -3825.559781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58686 -40.59889 -39.36776 -37.54280 -36.81804 -35.34562 -34.09201 -32.23948 -31.14350 -30.35539 -29.24937 -28.07577 -26.50692 -24.89028 -24.01700 -22.82308 -21.99079 -21.35832 -21.25810 -19.20386 -18.59332 -17.89794 -17.66059 -17.23648 -17.13508 -16.95522 -16.33692 -16.01441 -15.72995 -15.63920 -15.23773 -14.99323 -14.78208 -14.47929 -14.29736 -14.13949 -13.78354 -13.43633 -13.30259 -13.16310 -13.00997 -12.90413 -12.68882 -12.66890 -12.56637 -12.24005 -12.12421 -12.00433 -11.77914 -11.61801 -11.48075 -11.40906 -11.21715 -10.98777 -10.57589 -9.33939 -9.31217 -9.09173 -8.62896 -6.31525 0.95861 1.17187 1.23628 1.37263 1.47536 1.53245 1.75588 2.20663 2.65716 2.73017 3.07283 3.69501 3.76671 3.80168 4.01735 4.10688 4.13851 4.24779 4.31569 4.32913 4.34162 4.37118 4.48757 4.53766 4.59926 4.63816 4.67005 4.68545 4.73673 4.82227 4.90378 4.98472 5.04211 5.08896 5.17448 5.40247 5.41302 5.48673 5.73091 5.94053 6.02810 6.12704 6.14723 6.23810 6.31095 6.41559 6.73433 6.77539 6.96290 7.06542 8.34208 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.002290 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.739048 B =12223.798597 C =12381.919312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.535 6.535 5 C -0.099 4.099 6 C 0.102 3.898 7 H 0.054 0.946 8 C 0.028 3.972 9 N -0.547 5.547 10 C 0.128 3.872 11 C -0.193 4.193 12 C -0.085 4.085 13 C -0.192 4.192 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.243 4.243 24 C -0.082 4.082 25 C 0.024 3.976 26 C 0.072 3.928 27 O -0.390 6.390 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.134 0.866 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 -18.540 3.963 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.424 6.424 5 C -0.136 4.136 6 C 0.044 3.956 7 H 0.072 0.928 8 C -0.100 4.100 9 N -0.272 5.272 10 C 0.001 3.999 11 C -0.195 4.195 12 C -0.104 4.104 13 C -0.211 4.211 14 C 0.076 3.924 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.185 1.185 23 C -0.263 4.263 24 C -0.101 4.101 25 C -0.105 4.105 26 C -0.005 4.005 27 O -0.309 6.309 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.075 0.925 31 H 0.174 0.826 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.936 -18.136 3.500 21.992 hybrid contribution 0.472 1.120 0.161 1.226 sum -11.464 -17.016 3.661 20.842 Atomic orbital electron populations 1.23495 0.75163 1.05574 1.02196 1.86488 1.24718 1.32868 1.84020 1.24101 0.92953 0.81072 0.71443 1.90703 1.68003 1.37553 1.46098 1.21499 0.86608 0.96203 1.09263 1.21952 0.93441 0.92568 0.87632 0.92753 1.22800 0.94622 0.88996 1.03596 1.62172 1.14599 1.16114 1.34294 1.20663 0.85948 0.92670 1.00578 1.19254 1.11663 0.96073 0.92505 1.20731 0.98767 0.94414 0.96478 1.21261 1.06685 0.94673 0.98526 1.17961 0.88738 0.93653 0.92004 1.19816 1.39080 0.94751 0.99615 0.90956 1.26733 0.91662 1.04727 0.94884 1.69881 1.27531 1.38689 1.09074 0.85238 0.79672 0.76626 0.78438 1.18659 1.19020 1.18458 1.21141 1.12936 0.95860 0.96363 1.20646 0.98799 0.93404 0.97201 1.22730 0.96255 1.01074 0.90405 1.22608 0.92945 0.82484 1.02467 1.87937 1.79023 1.25161 1.38763 0.92257 0.84905 0.92518 0.82575 0.84831 0.92664 0.87583 0.94288 0.89944 0.87853 0.88551 0.90223 0.88847 0.87062 0.93778 0.90535 0.87193 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.39 10.57 -51.40 -0.54 -6.93 16 3 C 0.46 9.74 7.84 71.24 0.56 10.30 16 4 O -0.53 -15.72 15.18 26.96 0.41 -15.31 16 5 C -0.10 -1.48 5.52 29.85 0.16 -1.31 16 6 C 0.10 2.30 2.35 30.63 0.07 2.37 16 7 H 0.05 1.46 7.95 -2.39 -0.02 1.44 16 8 C 0.03 0.58 4.93 86.31 0.43 1.01 16 9 N -0.55 -15.88 4.72 -899.80 -4.24 -20.12 16 10 C 0.13 3.97 5.11 85.55 0.44 4.41 16 11 C -0.19 -7.89 4.92 -19.68 -0.10 -7.98 16 12 C -0.09 -3.92 9.67 22.22 0.21 -3.71 16 13 C -0.19 -10.27 8.70 22.73 0.20 -10.07 16 14 C 0.08 4.33 5.57 -21.29 -0.12 4.21 16 15 C -0.50 -27.82 9.05 23.46 0.21 -27.61 16 16 H 0.07 3.88 7.91 -2.91 -0.02 3.85 16 17 C 0.03 1.78 5.14 85.25 0.44 2.22 16 18 N -0.83 -44.00 10.97 21.82 0.24 -43.76 16 19 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 C -0.24 -12.02 9.80 22.73 0.22 -11.80 16 24 C -0.08 -3.48 7.89 22.22 0.18 -3.31 16 25 C 0.02 0.68 5.27 86.31 0.45 1.14 16 26 C 0.07 1.98 7.01 72.02 0.50 2.48 16 27 O -0.39 -10.69 9.72 -135.40 -1.32 -12.00 16 28 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 29 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.16 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.81 8.09 -2.39 -0.02 1.79 16 35 H 0.04 1.12 8.06 -2.39 -0.02 1.11 16 36 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.10 5.44 6.18 -2.91 -0.02 5.42 16 39 H 0.29 13.80 8.30 -92.70 -0.77 13.04 16 40 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.11 4.05 7.99 -2.91 -0.02 4.02 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 2.57 6.00 -2.39 -0.01 2.55 16 44 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.56 369.20 2.61 -65.95 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.97 Total: 27.14 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 5.06 Total: -36.08 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -4.01 Total: -63.88 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.45 Total: -34.24 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -68.56 2.61 -65.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343553029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds