Wall clock time and date at job start Tue Mar 31 2020 12:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99890 * 2 1 4 4 O 1.20820 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99680 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46980 * 174.54200 * 5 3 2 7 7 H 1.09001 * 109.50590 * 55.73178 * 6 5 3 8 8 C 1.53095 * 109.50292 * 295.59763 * 6 5 3 9 9 O 1.43017 * 109.25504 * 183.21853 * 8 6 5 10 10 C 1.43012 * 113.74149 * 58.66967 * 9 8 6 11 11 C 1.53098 * 109.25906 * 301.33435 * 10 9 8 12 12 N 1.47007 * 109.25960 * 56.84347 * 11 10 9 13 13 C 1.46900 * 111.00039 * 177.60745 * 12 11 10 14 14 C 1.50698 * 109.47635 * 295.21468 * 13 12 11 15 15 C 1.38634 * 119.74821 * 269.73137 * 14 13 12 16 16 C 1.37618 * 120.24642 * 179.71641 * 15 14 13 17 17 C 1.40713 * 119.74682 * 0.52722 * 16 15 14 18 18 C 1.41394 * 120.24463 * 179.72577 * 17 16 15 19 19 H 1.07997 * 119.99769 * 155.28957 * 18 17 16 20 20 C 1.39946 * 120.00210 * 335.28259 * 18 17 16 21 21 N 1.30829 * 119.99758 * 341.73044 * 20 18 17 22 22 Si 1.86799 * 120.00221 * 161.73391 * 20 18 17 23 23 H 1.48498 * 109.46975 * 94.97967 * 22 20 18 24 24 H 1.48496 * 109.46998 * 214.98517 * 22 20 18 25 25 H 1.48502 * 109.46731 * 334.98142 * 22 20 18 26 26 C 1.40723 * 119.51036 * 359.74274 * 17 16 15 27 27 C 1.37618 * 119.74244 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46735 * 299.99794 * 1 2 3 30 30 H 1.08996 * 109.47115 * 59.99902 * 1 2 3 31 31 H 1.09001 * 109.46910 * 294.54279 * 5 3 2 32 32 H 1.09005 * 109.47192 * 54.53904 * 5 3 2 33 33 H 1.09000 * 109.50948 * 303.14812 * 8 6 5 34 34 H 1.09000 * 109.50548 * 63.28448 * 8 6 5 35 35 H 1.08997 * 109.50981 * 181.39587 * 10 9 8 36 36 H 1.09005 * 109.50487 * 61.26379 * 10 9 8 37 37 H 1.09004 * 109.50509 * 296.90969 * 11 10 9 38 38 H 1.09004 * 109.50874 * 176.78399 * 11 10 9 39 39 H 1.09005 * 109.46838 * 55.21582 * 13 12 11 40 40 H 1.09002 * 109.47133 * 175.20620 * 13 12 11 41 41 H 1.08003 * 119.87480 * 359.97306 * 15 14 13 42 42 H 1.08007 * 120.12493 * 180.27146 * 16 15 14 43 43 H 0.97000 * 119.99802 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12783 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.87547 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7356 -0.1377 7 1 3.5451 3.3267 0.6569 8 6 3.5536 3.2760 -1.4986 9 8 4.0268 4.6169 -1.6520 10 6 5.4487 4.7397 -1.5608 11 6 5.9148 4.2139 -0.2006 12 7 5.4645 2.8240 -0.0379 13 6 5.9405 2.2619 1.2332 14 6 7.4451 2.1794 1.2140 15 6 8.0652 1.0315 0.7454 16 6 9.4386 0.9474 0.7179 17 6 10.2135 2.0280 1.1782 18 6 11.6252 1.9507 1.1601 19 1 12.2150 2.8545 1.1207 20 6 12.2582 0.7030 1.1935 21 7 11.5998 -0.3540 1.5948 22 14 14.0431 0.5466 0.6653 23 1 14.9217 0.6287 1.8596 24 1 14.2467 -0.7599 -0.0103 25 1 14.3796 1.6471 -0.2734 26 6 9.5732 3.1860 1.6570 27 6 8.1985 3.2498 1.6707 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9518 0.8673 0.9340 32 1 3.9601 0.6986 -0.8379 33 1 3.9657 2.6517 -2.2913 34 1 2.4651 3.2655 -1.5547 35 1 5.7308 5.7876 -1.6621 36 1 5.9159 4.1579 -2.3555 37 1 5.4900 4.8293 0.5925 38 1 7.0029 4.2525 -0.1488 39 1 5.6221 2.9025 2.0556 40 1 5.5235 1.2638 1.3678 41 1 7.4683 0.2017 0.3967 42 1 9.9197 0.0539 0.3483 43 1 12.0384 -1.2188 1.6176 44 1 10.1582 4.0210 2.0130 45 1 7.7048 4.1373 2.0381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347461664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:16 Heat of formation + Delta-G solvation = -104.850226 kcal Electronic energy + Delta-G solvation = -26912.011447 eV Core-core repulsion = 23087.400507 eV Total energy + Delta-G solvation = -3824.610940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87575 -39.51850 -37.65853 -36.77574 -35.73869 -33.79018 -32.68050 -30.55430 -29.28173 -29.18037 -27.97866 -27.04319 -25.46555 -23.36169 -22.99270 -21.22194 -20.87883 -20.12310 -19.61340 -17.91075 -17.32399 -16.94029 -16.83593 -16.20429 -15.96579 -15.37264 -15.00826 -14.79625 -14.55066 -14.04404 -13.99763 -13.67256 -13.53239 -13.36123 -13.23562 -12.83367 -12.51656 -12.30821 -12.01332 -11.95657 -11.67011 -11.57507 -11.25403 -11.23592 -11.06539 -11.01170 -10.95461 -10.64939 -10.48022 -10.38886 -10.30799 -9.71578 -9.42032 -9.40513 -9.15115 -8.12674 -7.47167 -7.32696 -6.79816 -4.37501 1.99261 2.44518 2.71087 3.03567 3.05656 3.08371 3.15231 3.90149 3.91207 4.09938 4.54225 4.60228 4.68312 4.84230 4.87220 4.91580 5.12956 5.17259 5.26264 5.35615 5.41134 5.48181 5.51681 5.67453 5.73914 5.78107 5.88451 5.90840 6.08303 6.13157 6.18143 6.22484 6.32306 6.39242 6.92562 7.03670 7.14225 7.21670 7.26673 7.27392 7.35564 7.54024 7.58560 7.83822 8.02811 8.10137 8.27326 8.61734 8.86867 8.94911 10.14953 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002876 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.128028 B = 9734.230056 C =10678.244682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.506 6.506 5 C -0.112 4.112 6 C 0.059 3.941 7 H 0.057 0.943 8 C 0.068 3.932 9 O -0.385 6.385 10 C 0.060 3.940 11 C 0.022 3.978 12 N -0.524 5.524 13 C 0.113 3.887 14 C -0.210 4.210 15 C -0.078 4.078 16 C -0.167 4.167 17 C 0.114 3.886 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.077 3.923 21 N -0.791 5.791 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.227 4.227 27 C -0.084 4.084 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.280 0.720 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 0.368 -4.032 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.394 6.394 5 C -0.150 4.150 6 C -0.050 4.050 7 H 0.075 0.925 8 C -0.010 4.010 9 O -0.304 6.304 10 C -0.016 4.016 11 C -0.106 4.106 12 N -0.250 5.250 13 C -0.013 4.013 14 C -0.212 4.212 15 C -0.097 4.097 16 C -0.186 4.186 17 C 0.111 3.889 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.416 5.416 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.247 4.247 27 C -0.103 4.103 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.410 0.289 -4.391 16.026 hybrid contribution 0.512 0.040 0.685 0.856 sum -14.898 0.329 -3.706 15.355 Atomic orbital electron populations 1.23268 0.76362 1.03685 1.02557 1.86531 1.23432 1.33481 1.84079 1.23826 0.92210 0.81288 0.72031 1.90665 1.67324 1.36157 1.45224 1.21492 0.86805 0.99463 1.07253 1.22020 0.89974 0.93578 0.99428 0.92511 1.22807 0.99910 0.83667 0.94571 1.87971 1.22041 1.27172 1.93179 1.22740 0.80936 1.01344 0.96624 1.22794 1.02959 0.87973 0.96828 1.62361 1.07264 1.18982 1.36346 1.20883 0.94359 0.98251 0.87763 1.18760 0.91654 0.96882 1.13873 1.20462 0.94672 0.95641 0.98912 1.21280 0.92047 1.00642 1.04670 1.17620 0.93271 0.90738 0.87267 1.19597 0.91822 0.92953 1.44853 0.90506 1.25906 1.00517 0.95385 0.92308 1.69831 1.38571 1.00682 1.32547 0.86344 0.82132 0.78798 0.79742 1.19608 1.20010 1.18419 1.20934 0.93307 1.00317 1.10117 1.20352 0.94003 0.96062 0.99854 0.88100 0.91910 0.91852 0.86537 0.86503 0.92663 0.87979 0.88688 0.92186 0.94592 0.87897 0.95610 0.91119 0.89501 0.86643 0.90877 0.89170 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.77 10.57 -39.25 -0.41 -4.18 16 3 C 0.46 5.44 7.60 36.01 0.27 5.71 16 4 O -0.51 -7.04 13.90 -18.75 -0.26 -7.30 16 5 C -0.11 -1.27 5.14 -27.88 -0.14 -1.42 16 6 C 0.06 0.80 1.70 -67.60 -0.12 0.68 16 7 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 8 C 0.07 0.91 5.99 37.21 0.22 1.13 16 9 O -0.39 -5.76 10.83 -35.23 -0.38 -6.14 16 10 C 0.06 0.83 7.01 37.21 0.26 1.09 16 11 C 0.02 0.34 5.23 -3.72 -0.02 0.32 16 12 N -0.52 -8.04 4.54 -227.77 -1.03 -9.07 16 13 C 0.11 1.87 4.88 -4.98 -0.02 1.84 16 14 C -0.21 -4.27 4.87 -104.33 -0.51 -4.78 16 15 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 16 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 17 C 0.11 2.94 5.57 -106.82 -0.59 2.35 16 18 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 19 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.81 16 21 N -0.79 -20.04 11.00 55.55 0.61 -19.43 16 22 Si 0.91 18.33 29.60 -169.99 -5.03 13.30 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 26 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 27 C -0.08 -1.78 7.85 -39.66 -0.31 -2.09 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.12 1.26 5.97 -51.93 -0.31 0.95 16 32 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.37 6.18 -51.93 -0.32 1.05 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.72 5.98 -51.93 -0.31 1.41 16 39 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.07 1.06 5.68 -51.93 -0.29 0.77 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.12 3.02 6.20 -52.48 -0.33 2.69 16 43 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 44 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 45 H 0.08 1.57 8.01 -52.49 -0.42 1.15 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -28.56 361.92 -9.07 -37.63 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.59 Total: 6.55 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.43 Total: -16.81 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: -0.42 Total: -28.50 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.06 Total: -17.62 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.56 -9.07 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347461664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.223 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds