Wall clock time and date at job start Tue Mar 31 2020 12:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99890 * 2 1 4 4 O 1.20820 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99680 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46980 * 174.54200 * 5 3 2 7 7 H 1.09001 * 109.50590 * 55.73178 * 6 5 3 8 8 C 1.53095 * 109.50292 * 295.59763 * 6 5 3 9 9 O 1.43017 * 109.25504 * 183.21853 * 8 6 5 10 10 C 1.43012 * 113.74149 * 58.66967 * 9 8 6 11 11 C 1.53098 * 109.25906 * 301.33435 * 10 9 8 12 12 N 1.47007 * 109.25960 * 56.84347 * 11 10 9 13 13 C 1.46900 * 111.00039 * 177.60745 * 12 11 10 14 14 C 1.50698 * 109.47635 * 295.21468 * 13 12 11 15 15 C 1.38634 * 119.74821 * 269.73137 * 14 13 12 16 16 C 1.37618 * 120.24642 * 179.71641 * 15 14 13 17 17 C 1.40713 * 119.74682 * 0.52722 * 16 15 14 18 18 C 1.41394 * 120.24463 * 179.72577 * 17 16 15 19 19 H 1.07997 * 119.99769 * 155.28957 * 18 17 16 20 20 C 1.39946 * 120.00210 * 335.28259 * 18 17 16 21 21 N 1.30829 * 119.99758 * 341.73044 * 20 18 17 22 22 Si 1.86799 * 120.00221 * 161.73391 * 20 18 17 23 23 H 1.48498 * 109.46975 * 94.97967 * 22 20 18 24 24 H 1.48496 * 109.46998 * 214.98517 * 22 20 18 25 25 H 1.48502 * 109.46731 * 334.98142 * 22 20 18 26 26 C 1.40723 * 119.51036 * 359.74274 * 17 16 15 27 27 C 1.37618 * 119.74244 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46735 * 299.99794 * 1 2 3 30 30 H 1.08996 * 109.47115 * 59.99902 * 1 2 3 31 31 H 1.09001 * 109.46910 * 294.54279 * 5 3 2 32 32 H 1.09005 * 109.47192 * 54.53904 * 5 3 2 33 33 H 1.09000 * 109.50948 * 303.14812 * 8 6 5 34 34 H 1.09000 * 109.50548 * 63.28448 * 8 6 5 35 35 H 1.08997 * 109.50981 * 181.39587 * 10 9 8 36 36 H 1.09005 * 109.50487 * 61.26379 * 10 9 8 37 37 H 1.09004 * 109.50509 * 296.90969 * 11 10 9 38 38 H 1.09004 * 109.50874 * 176.78399 * 11 10 9 39 39 H 1.09005 * 109.46838 * 55.21582 * 13 12 11 40 40 H 1.09002 * 109.47133 * 175.20620 * 13 12 11 41 41 H 1.08003 * 119.87480 * 359.97306 * 15 14 13 42 42 H 1.08007 * 120.12493 * 180.27146 * 16 15 14 43 43 H 0.97000 * 119.99802 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12783 * 179.97438 * 26 17 16 45 45 H 1.08002 * 119.87547 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7356 -0.1377 7 1 3.5451 3.3267 0.6569 8 6 3.5536 3.2760 -1.4986 9 8 4.0268 4.6169 -1.6520 10 6 5.4487 4.7397 -1.5608 11 6 5.9148 4.2139 -0.2006 12 7 5.4645 2.8240 -0.0379 13 6 5.9405 2.2619 1.2332 14 6 7.4451 2.1794 1.2140 15 6 8.0652 1.0315 0.7454 16 6 9.4386 0.9474 0.7179 17 6 10.2135 2.0280 1.1782 18 6 11.6252 1.9507 1.1601 19 1 12.2150 2.8545 1.1207 20 6 12.2582 0.7030 1.1935 21 7 11.5998 -0.3540 1.5948 22 14 14.0431 0.5466 0.6653 23 1 14.9217 0.6287 1.8596 24 1 14.2467 -0.7599 -0.0103 25 1 14.3796 1.6471 -0.2734 26 6 9.5732 3.1860 1.6570 27 6 8.1985 3.2498 1.6707 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.9518 0.8673 0.9340 32 1 3.9601 0.6986 -0.8379 33 1 3.9657 2.6517 -2.2913 34 1 2.4651 3.2655 -1.5547 35 1 5.7308 5.7876 -1.6621 36 1 5.9159 4.1579 -2.3555 37 1 5.4900 4.8293 0.5925 38 1 7.0029 4.2525 -0.1488 39 1 5.6221 2.9025 2.0556 40 1 5.5235 1.2638 1.3678 41 1 7.4683 0.2017 0.3967 42 1 9.9197 0.0539 0.3483 43 1 12.0384 -1.2188 1.6176 44 1 10.1582 4.0210 2.0130 45 1 7.7048 4.1373 2.0381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347461664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:15 Heat of formation + Delta-G solvation = -121.207776 kcal Electronic energy + Delta-G solvation = -26912.720764 eV Core-core repulsion = 23087.400507 eV Total energy + Delta-G solvation = -3825.320257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81756 -40.64950 -39.32644 -37.65904 -37.04033 -35.48076 -33.85310 -32.18123 -31.07437 -30.19111 -29.28882 -27.91034 -26.99881 -24.50644 -24.42541 -22.81018 -22.03800 -21.68005 -20.85078 -19.18233 -18.82477 -17.86910 -17.71491 -17.38775 -17.11650 -16.97607 -16.33676 -16.01654 -15.73702 -15.50478 -15.33459 -15.06016 -14.87654 -14.51662 -14.21332 -14.09307 -13.92552 -13.75713 -13.35204 -13.21878 -12.94170 -12.85813 -12.71780 -12.64504 -12.56678 -12.25790 -12.11433 -11.95355 -11.77507 -11.63004 -11.43148 -11.36656 -11.18556 -10.96772 -10.61264 -9.40897 -9.28754 -9.10791 -8.61736 -6.29480 0.97156 1.10168 1.19731 1.39132 1.48413 1.54400 1.67074 2.22232 2.64997 2.85530 3.04863 3.59386 3.64676 3.81250 3.91850 4.03502 4.11029 4.22508 4.26046 4.31372 4.33845 4.37681 4.46918 4.50499 4.56737 4.63784 4.65905 4.71003 4.75054 4.83459 4.86342 4.96039 5.01305 5.11187 5.19274 5.36370 5.42229 5.50361 5.75118 5.90977 5.96796 6.09275 6.14842 6.16854 6.31596 6.43846 6.67362 6.75518 6.98453 7.08555 8.35416 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002876 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.128028 B = 9734.230056 C =10678.244682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.532 6.532 5 C -0.109 4.109 6 C 0.066 3.934 7 H 0.044 0.956 8 C 0.068 3.932 9 O -0.399 6.399 10 C 0.063 3.937 11 C 0.022 3.978 12 N -0.528 5.528 13 C 0.117 3.883 14 C -0.192 4.192 15 C -0.080 4.080 16 C -0.190 4.190 17 C 0.081 3.919 18 C -0.504 4.504 19 H 0.071 0.929 20 C 0.037 3.963 21 N -0.824 5.824 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.244 4.244 27 C -0.082 4.082 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.287 0.713 44 H 0.091 0.909 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 -0.071 -4.445 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.314 3.686 4 O -0.422 6.422 5 C -0.146 4.146 6 C -0.043 4.043 7 H 0.062 0.938 8 C -0.009 4.009 9 O -0.318 6.318 10 C -0.013 4.013 11 C -0.106 4.106 12 N -0.253 5.253 13 C -0.009 4.009 14 C -0.194 4.194 15 C -0.099 4.099 16 C -0.209 4.209 17 C 0.079 3.921 18 C -0.533 4.533 19 H 0.089 0.911 20 C -0.178 4.178 21 N -0.450 5.450 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.190 1.190 25 H -0.185 1.185 26 C -0.263 4.263 27 C -0.100 4.100 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.779 -0.157 -4.802 17.453 hybrid contribution 0.703 0.214 0.826 1.106 sum -16.076 0.057 -3.976 16.560 Atomic orbital electron populations 1.23560 0.74668 1.05695 1.02613 1.86516 1.25100 1.32630 1.83606 1.23800 0.92253 0.81275 0.71313 1.90661 1.67886 1.37030 1.46594 1.21451 0.86821 0.98034 1.08310 1.21961 0.88349 0.94965 0.99042 0.93782 1.22857 0.99992 0.83286 0.94760 1.87958 1.22569 1.28024 1.93202 1.22788 0.80402 1.02524 0.95609 1.22770 1.01867 0.88063 0.97853 1.62273 1.08596 1.19101 1.35350 1.20837 0.91506 0.99869 0.88678 1.19148 0.93962 0.95475 1.10815 1.20721 0.93767 0.96988 0.98438 1.21240 0.93412 1.00113 1.06168 1.17946 0.93848 0.91919 0.88423 1.19816 0.92418 0.93659 1.47434 0.91063 1.26692 1.04792 0.94601 0.91702 1.69876 1.40474 1.01273 1.33355 0.85268 0.76656 0.78890 0.79360 1.18852 1.18975 1.18458 1.21114 0.94677 0.99948 1.10583 1.20618 0.93118 0.97216 0.99072 0.85180 0.92012 0.91704 0.85622 0.85104 0.91752 0.87945 0.86788 0.92185 0.94563 0.89579 0.94962 0.89069 0.87298 0.88515 0.90207 0.89056 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.76 10.57 -51.40 -0.54 -7.30 16 3 C 0.47 10.03 7.60 71.24 0.54 10.57 16 4 O -0.53 -13.98 13.90 21.98 0.31 -13.67 16 5 C -0.11 -2.17 5.14 29.85 0.15 -2.02 16 6 C 0.07 1.63 1.70 44.93 0.08 1.71 16 7 H 0.04 1.23 7.90 -2.39 -0.02 1.22 16 8 C 0.07 1.70 5.99 72.01 0.43 2.13 16 9 O -0.40 -11.19 10.83 -148.98 -1.61 -12.81 16 10 C 0.06 1.62 7.01 72.01 0.50 2.12 16 11 C 0.02 0.64 5.23 86.32 0.45 1.09 16 12 N -0.53 -14.96 4.54 -874.53 -3.97 -18.93 16 13 C 0.12 3.56 4.88 85.56 0.42 3.97 16 14 C -0.19 -7.52 4.87 -19.68 -0.10 -7.62 16 15 C -0.08 -3.50 9.67 22.22 0.21 -3.28 16 16 C -0.19 -9.74 8.70 22.73 0.20 -9.54 16 17 C 0.08 4.33 5.57 -21.29 -0.12 4.21 16 18 C -0.50 -27.24 9.05 23.46 0.21 -27.03 16 19 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 20 C 0.04 1.87 5.13 85.26 0.44 2.30 16 21 N -0.82 -42.84 11.00 21.83 0.24 -42.60 16 22 Si 0.98 38.21 29.60 68.60 2.03 40.24 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 C -0.24 -11.75 9.80 22.73 0.22 -11.53 16 27 C -0.08 -3.38 7.85 22.22 0.17 -3.21 16 28 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.13 2.30 5.97 -2.39 -0.01 2.28 16 32 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 2.59 6.18 -2.39 -0.01 2.57 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 2.76 5.98 -2.38 -0.01 2.75 16 39 H 0.03 0.96 8.07 -2.38 -0.02 0.94 16 40 H 0.09 2.42 5.68 -2.39 -0.01 2.41 16 41 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.10 5.25 6.20 -2.91 -0.02 5.23 16 43 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 44 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.11 3.87 8.01 -2.91 -0.02 3.85 16 Total: -1.00 -62.62 361.92 2.46 -60.16 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.99 Total: 29.48 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 5.02 Total: -34.57 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -3.73 Total: -61.53 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.85 Total: -33.78 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -62.62 2.46 -60.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347461664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.049 kcal (2) G-P(sol) polarization free energy of solvation -62.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds