Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00438 * 2 1 4 4 O 1.20820 * 119.99424 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.46789 * 184.21142 * 5 3 2 7 7 N 1.46903 * 110.54605 * 53.00507 * 6 5 3 8 8 C 1.46898 * 110.99829 * 177.46094 * 7 6 5 9 9 C 1.50698 * 109.46707 * 182.90998 * 8 7 6 10 10 C 1.38634 * 119.75245 * 269.72906 * 9 8 7 11 11 C 1.37622 * 120.24574 * 179.72248 * 10 9 8 12 12 C 1.40713 * 119.74679 * 0.57192 * 11 10 9 13 13 C 1.41394 * 120.24604 * 179.67997 * 12 11 10 14 14 H 1.08005 * 119.99653 * 29.21362 * 13 12 11 15 15 C 1.39942 * 120.00311 * 209.21190 * 13 12 11 16 16 N 1.30827 * 120.00037 * 9.83300 * 15 13 12 17 17 Si 1.86796 * 120.00205 * 189.83369 * 15 13 12 18 18 H 1.48501 * 109.47008 * 60.00053 * 17 15 13 19 19 H 1.48497 * 109.47283 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47337 * 300.00037 * 17 15 13 21 21 C 1.40714 * 119.51282 * 359.70353 * 12 11 10 22 22 C 1.37618 * 119.74266 * 0.02562 * 21 12 11 23 23 C 1.54812 * 110.48784 * 175.62694 * 6 5 3 24 24 C 1.54997 * 102.12443 * 139.56998 * 23 6 5 25 25 O 1.44383 * 103.48928 * 322.95527 * 24 23 6 26 26 C 1.43739 * 106.97469 * 40.06593 * 25 24 23 27 27 H 1.09001 * 109.47027 * 300.00227 * 1 2 3 28 28 H 1.09008 * 109.46967 * 60.00041 * 1 2 3 29 29 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47419 * 64.20603 * 5 3 2 31 31 H 1.09002 * 109.46520 * 304.20445 * 5 3 2 32 32 H 1.00901 * 110.99271 * 53.51360 * 7 6 5 33 33 H 1.09000 * 109.47627 * 302.91450 * 8 7 6 34 34 H 1.09002 * 109.47134 * 62.91924 * 8 7 6 35 35 H 1.08003 * 119.87671 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.12738 * 180.27854 * 11 10 9 37 37 H 0.96993 * 119.99964 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.13369 * 180.02562 * 21 12 11 39 39 H 1.07998 * 119.87913 * 180.02562 * 22 21 12 40 40 H 1.09003 * 110.90493 * 21.35603 * 23 6 5 41 41 H 1.08999 * 110.90707 * 257.78372 * 23 6 5 42 42 H 1.08995 * 110.62134 * 81.46025 * 24 23 6 43 43 H 1.09010 * 110.61513 * 204.45894 * 24 23 6 44 44 H 1.08998 * 109.88247 * 92.90730 * 26 25 24 45 45 H 1.08999 * 109.87848 * 213.90909 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0005 2.7380 0.1055 7 7 3.3577 3.3843 1.2575 8 6 3.8139 4.7729 1.4043 9 6 3.1895 5.3792 2.6345 10 6 1.9733 6.0374 2.5357 11 6 1.3912 6.5899 3.6536 12 6 2.0410 6.4953 4.8982 13 6 1.4557 7.0651 6.0523 14 1 0.3814 7.1453 6.1294 15 6 2.2684 7.5249 7.0947 16 7 3.5633 7.6070 6.9272 17 14 1.5043 8.0215 8.7253 18 1 0.7915 6.8585 9.3124 19 1 2.5712 8.4700 9.6557 20 1 0.5426 9.1312 8.5039 21 6 3.2778 5.8300 4.9856 22 6 3.8386 5.2801 3.8556 23 6 5.5412 2.8394 0.2173 24 6 5.8534 4.0611 -0.6841 25 8 4.9111 3.9280 -1.7699 26 6 3.6664 3.4963 -1.1950 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9523 0.8474 -0.9260 31 1 3.9597 0.7166 0.8491 32 1 3.5199 2.8590 2.1036 33 1 4.8994 4.7905 1.5014 34 1 3.5182 5.3472 0.5263 35 1 1.4789 6.1133 1.5784 36 1 0.4416 7.0984 3.5752 37 1 4.1265 7.9261 7.6495 38 1 3.7851 5.7511 5.9358 39 1 4.7876 4.7686 3.9202 40 1 6.0193 1.9390 -0.1686 41 1 5.8449 3.0281 1.2470 42 1 5.6850 4.9913 -0.1416 43 1 6.8769 4.0122 -1.0559 44 1 3.0425 4.3612 -0.9697 45 1 3.1470 2.8355 -1.8890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362269075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = -102.456794 kcal Electronic energy + Delta-G solvation = -27166.735430 eV Core-core repulsion = 23342.228277 eV Total energy + Delta-G solvation = -3824.507153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84022 -39.67321 -37.60709 -36.45449 -35.34139 -33.75954 -32.00952 -30.22252 -29.58517 -29.18334 -28.09518 -26.52688 -26.05845 -23.58700 -22.57467 -21.31851 -20.95787 -19.84853 -19.47932 -17.49361 -17.25840 -16.99304 -16.53182 -16.20407 -15.97598 -15.53821 -15.10975 -14.72026 -14.27135 -13.92454 -13.80792 -13.59762 -13.34919 -13.05716 -13.04456 -12.47125 -12.39593 -12.08275 -11.99603 -11.92728 -11.74430 -11.54464 -11.49905 -11.25249 -11.06249 -11.00896 -10.90176 -10.73333 -10.50578 -10.33454 -10.27116 -9.67288 -9.47522 -9.34831 -9.16780 -8.04815 -7.43205 -7.21973 -6.68386 -4.35535 2.36917 2.69345 2.75526 3.07060 3.10030 3.10764 3.18535 3.87822 3.95648 4.23022 4.41085 4.48519 4.72469 4.75030 4.87233 5.05710 5.08011 5.09946 5.16244 5.28403 5.34771 5.48581 5.59090 5.64373 5.67465 5.71869 5.79618 5.88213 5.92873 6.00234 6.30075 6.40354 6.44691 6.46044 6.75723 6.95778 7.11222 7.27613 7.32843 7.40606 7.63239 7.66727 7.89862 7.90666 8.08042 8.14390 8.33515 8.66564 8.92726 8.99462 10.25576 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003184 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.289972 B = 8793.124388 C = 9898.439740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.371 6.371 3 C 0.450 3.550 4 O -0.460 6.460 5 C -0.096 4.096 6 C 0.095 3.905 7 N -0.653 5.653 8 C 0.119 3.881 9 C -0.208 4.208 10 C -0.069 4.069 11 C -0.223 4.223 12 C 0.112 3.888 13 C -0.465 4.465 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.805 5.805 17 Si 0.911 3.089 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.158 4.158 22 C -0.099 4.099 23 C -0.185 4.185 24 C 0.043 3.957 25 O -0.382 6.382 26 C 0.062 3.938 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.340 0.660 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.279 0.721 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -13.285 -11.704 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.291 3.709 4 O -0.343 6.343 5 C -0.134 4.134 6 C 0.003 3.997 7 N -0.284 5.284 8 C -0.008 4.008 9 C -0.210 4.210 10 C -0.087 4.087 11 C -0.243 4.243 12 C 0.110 3.890 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.431 5.431 17 Si 0.735 3.265 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.178 4.178 22 C -0.118 4.118 23 C -0.225 4.225 24 C -0.033 4.033 25 O -0.301 6.301 26 C -0.015 4.015 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.312 -12.660 -12.151 17.700 hybrid contribution 0.389 0.132 1.453 1.510 sum 2.700 -12.528 -10.698 16.694 Atomic orbital electron populations 1.23187 0.76585 1.03164 1.02659 1.86471 1.23270 1.34182 1.85009 1.23444 0.91787 0.81528 0.74191 1.90778 1.66293 1.35520 1.41709 1.21445 0.88873 0.97429 1.05676 1.22117 0.90998 0.92120 0.94512 1.60782 1.59473 1.03203 1.04918 1.20776 0.95432 0.87548 0.97047 1.18895 0.98737 1.09929 0.93401 1.20358 0.94428 0.97269 0.96691 1.21046 1.01893 1.08368 0.92945 1.17635 0.91519 0.88240 0.91644 1.19558 0.94486 1.35290 1.00186 0.90675 1.25872 0.94621 0.93763 0.99998 1.69782 1.04925 1.35324 1.33088 0.86333 0.79492 0.79725 0.80907 1.18954 1.20401 1.19084 1.21323 0.98405 1.00662 0.97368 1.20522 0.97714 1.00386 0.93190 1.23876 0.96959 0.99911 1.01775 1.23678 0.93883 0.97569 0.88187 1.88852 1.21694 1.88759 1.30763 1.23264 0.86475 0.99203 0.92558 0.91724 0.92167 0.88587 0.87292 0.87760 0.84043 0.95580 0.91726 0.89410 0.89103 0.91029 0.86350 0.89997 0.90073 0.89627 0.91215 0.89215 0.90333 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.25 10.57 -39.27 -0.41 -4.67 16 3 C 0.45 5.70 7.39 36.01 0.27 5.97 16 4 O -0.46 -7.41 13.99 -18.75 -0.26 -7.68 16 5 C -0.10 -0.95 4.73 -27.88 -0.13 -1.08 16 6 C 0.10 1.14 0.60 -130.02 -0.08 1.07 16 7 N -0.65 -9.90 4.63 -99.62 -0.46 -10.36 16 8 C 0.12 2.03 4.12 -4.98 -0.02 2.01 16 9 C -0.21 -4.44 5.39 -104.33 -0.56 -5.01 16 10 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 11 C -0.22 -5.61 9.80 -38.87 -0.38 -5.99 16 12 C 0.11 3.02 5.55 -106.83 -0.59 2.42 16 13 C -0.46 -12.51 9.06 -37.74 -0.34 -12.86 16 14 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 15 C 0.07 1.87 5.27 -17.34 -0.09 1.78 16 16 N -0.80 -20.98 10.82 55.55 0.60 -20.38 16 17 Si 0.91 18.94 29.57 -169.99 -5.03 13.92 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 C -0.16 -4.08 8.66 -38.87 -0.34 -4.42 16 22 C -0.10 -2.25 9.67 -39.66 -0.38 -2.63 16 23 C -0.19 -1.91 5.72 -24.72 -0.14 -2.05 16 24 C 0.04 0.50 7.21 38.21 0.28 0.77 16 25 O -0.38 -5.21 11.52 -35.23 -0.41 -5.62 16 26 C 0.06 0.83 5.67 37.79 0.21 1.05 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.06 0.55 8.13 -51.92 -0.42 0.13 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.11 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.34 5.16 8.68 -39.29 -0.34 4.82 16 33 H 0.03 0.41 5.13 -51.93 -0.27 0.15 16 34 H 0.06 1.14 6.31 -51.93 -0.33 0.81 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 36 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.12 3.17 6.22 -52.49 -0.33 2.84 16 39 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 41 H 0.09 0.90 7.26 -51.93 -0.38 0.52 16 42 H 0.07 0.87 5.99 -51.93 -0.31 0.56 16 43 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.08 1.23 6.35 -51.93 -0.33 0.90 16 45 H 0.08 1.01 7.41 -51.93 -0.38 0.62 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -30.00 361.85 -8.56 -38.56 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.42 Total: 10.29 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.62 Total: -19.51 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.14 Total: -30.74 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.08 Total: -17.96 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.00 -8.56 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362269075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.898 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds