Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 117.00438 * 2 1 4 4 O 1.20820 * 119.99424 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.46789 * 184.21142 * 5 3 2 7 7 N 1.46903 * 110.54605 * 53.00507 * 6 5 3 8 8 C 1.46898 * 110.99829 * 177.46094 * 7 6 5 9 9 C 1.50698 * 109.46707 * 182.90998 * 8 7 6 10 10 C 1.38634 * 119.75245 * 269.72906 * 9 8 7 11 11 C 1.37622 * 120.24574 * 179.72248 * 10 9 8 12 12 C 1.40713 * 119.74679 * 0.57192 * 11 10 9 13 13 C 1.41394 * 120.24604 * 179.67997 * 12 11 10 14 14 H 1.08005 * 119.99653 * 29.21362 * 13 12 11 15 15 C 1.39942 * 120.00311 * 209.21190 * 13 12 11 16 16 N 1.30827 * 120.00037 * 9.83300 * 15 13 12 17 17 Si 1.86796 * 120.00205 * 189.83369 * 15 13 12 18 18 H 1.48501 * 109.47008 * 60.00053 * 17 15 13 19 19 H 1.48497 * 109.47283 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47337 * 300.00037 * 17 15 13 21 21 C 1.40714 * 119.51282 * 359.70353 * 12 11 10 22 22 C 1.37618 * 119.74266 * 0.02562 * 21 12 11 23 23 C 1.54812 * 110.48784 * 175.62694 * 6 5 3 24 24 C 1.54997 * 102.12443 * 139.56998 * 23 6 5 25 25 O 1.44383 * 103.48928 * 322.95527 * 24 23 6 26 26 C 1.43739 * 106.97469 * 40.06593 * 25 24 23 27 27 H 1.09001 * 109.47027 * 300.00227 * 1 2 3 28 28 H 1.09008 * 109.46967 * 60.00041 * 1 2 3 29 29 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47419 * 64.20603 * 5 3 2 31 31 H 1.09002 * 109.46520 * 304.20445 * 5 3 2 32 32 H 1.00901 * 110.99271 * 53.51360 * 7 6 5 33 33 H 1.09000 * 109.47627 * 302.91450 * 8 7 6 34 34 H 1.09002 * 109.47134 * 62.91924 * 8 7 6 35 35 H 1.08003 * 119.87671 * 359.97438 * 10 9 8 36 36 H 1.08004 * 120.12738 * 180.27854 * 11 10 9 37 37 H 0.96993 * 119.99964 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.13369 * 180.02562 * 21 12 11 39 39 H 1.07998 * 119.87913 * 180.02562 * 22 21 12 40 40 H 1.09003 * 110.90493 * 21.35603 * 23 6 5 41 41 H 1.08999 * 110.90707 * 257.78372 * 23 6 5 42 42 H 1.08995 * 110.62134 * 81.46025 * 24 23 6 43 43 H 1.09010 * 110.61513 * 204.45894 * 24 23 6 44 44 H 1.08998 * 109.88247 * 92.90730 * 26 25 24 45 45 H 1.08999 * 109.87848 * 213.90909 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0005 2.7380 0.1055 7 7 3.3577 3.3843 1.2575 8 6 3.8139 4.7729 1.4043 9 6 3.1895 5.3792 2.6345 10 6 1.9733 6.0374 2.5357 11 6 1.3912 6.5899 3.6536 12 6 2.0410 6.4953 4.8982 13 6 1.4557 7.0651 6.0523 14 1 0.3814 7.1453 6.1294 15 6 2.2684 7.5249 7.0947 16 7 3.5633 7.6070 6.9272 17 14 1.5043 8.0215 8.7253 18 1 0.7915 6.8585 9.3124 19 1 2.5712 8.4700 9.6557 20 1 0.5426 9.1312 8.5039 21 6 3.2778 5.8300 4.9856 22 6 3.8386 5.2801 3.8556 23 6 5.5412 2.8394 0.2173 24 6 5.8534 4.0611 -0.6841 25 8 4.9111 3.9280 -1.7699 26 6 3.6664 3.4963 -1.1950 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9523 0.8474 -0.9260 31 1 3.9597 0.7166 0.8491 32 1 3.5199 2.8590 2.1036 33 1 4.8994 4.7905 1.5014 34 1 3.5182 5.3472 0.5263 35 1 1.4789 6.1133 1.5784 36 1 0.4416 7.0984 3.5752 37 1 4.1265 7.9261 7.6495 38 1 3.7851 5.7511 5.9358 39 1 4.7876 4.7686 3.9202 40 1 6.0193 1.9390 -0.1686 41 1 5.8449 3.0281 1.2470 42 1 5.6850 4.9913 -0.1416 43 1 6.8769 4.0122 -1.0559 44 1 3.0425 4.3612 -0.9697 45 1 3.1470 2.8355 -1.8890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362269075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = -120.673300 kcal Electronic energy + Delta-G solvation = -27167.525357 eV Core-core repulsion = 23342.228277 eV Total energy + Delta-G solvation = -3825.297080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82260 -40.66582 -39.41361 -37.42763 -36.60815 -35.47325 -33.38055 -31.33098 -31.16424 -30.87285 -29.08474 -27.70806 -27.41385 -25.07132 -23.66624 -22.85787 -22.29190 -21.56233 -20.48483 -19.20614 -18.42849 -18.01048 -17.51255 -17.18757 -17.15031 -16.93833 -16.46224 -15.99155 -15.67148 -15.54746 -15.06540 -14.88536 -14.53348 -14.28048 -14.16060 -13.98336 -13.79172 -13.44455 -13.30064 -13.06201 -12.89995 -12.88436 -12.76773 -12.68884 -12.39470 -12.35539 -12.17307 -12.00394 -11.90800 -11.64679 -11.41110 -11.29058 -11.24057 -11.06025 -10.57988 -9.39198 -9.23844 -9.06299 -8.57757 -6.35984 0.94402 1.15220 1.37262 1.42793 1.48671 1.51112 1.87176 2.21650 2.70739 2.94675 3.26024 3.49856 3.57063 3.79141 3.80356 4.02621 4.18950 4.26159 4.31995 4.33499 4.37331 4.38471 4.53865 4.55554 4.56668 4.62024 4.72293 4.75818 4.77079 4.82494 4.87433 5.01307 5.03251 5.10222 5.17613 5.37638 5.48012 5.56109 5.72032 5.75246 5.95878 6.10921 6.15354 6.25454 6.41164 6.51808 6.71086 6.95830 6.97367 7.03907 8.38304 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003184 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.289972 B = 8793.124388 C = 9898.439740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.449 3.551 4 O -0.504 6.504 5 C -0.091 4.091 6 C 0.097 3.903 7 N -0.664 5.664 8 C 0.132 3.868 9 C -0.192 4.192 10 C -0.078 4.078 11 C -0.241 4.241 12 C 0.079 3.921 13 C -0.506 4.506 14 H 0.069 0.931 15 C 0.033 3.967 16 N -0.835 5.835 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.179 4.179 22 C -0.097 4.097 23 C -0.175 4.175 24 C 0.035 3.965 25 O -0.394 6.394 26 C 0.064 3.936 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.342 0.658 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.286 0.714 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.048 0.952 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -15.333 -12.271 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.288 6.288 3 C 0.291 3.709 4 O -0.390 6.390 5 C -0.129 4.129 6 C 0.005 3.995 7 N -0.296 5.296 8 C 0.004 3.996 9 C -0.193 4.193 10 C -0.097 4.097 11 C -0.261 4.261 12 C 0.077 3.923 13 C -0.537 4.537 14 H 0.088 0.912 15 C -0.180 4.180 16 N -0.462 5.462 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.187 1.187 21 C -0.198 4.198 22 C -0.115 4.115 23 C -0.214 4.214 24 C -0.041 4.041 25 O -0.313 6.313 26 C -0.013 4.013 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.131 0.869 44 H 0.066 0.934 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.877 -14.737 -12.742 19.864 hybrid contribution -0.084 0.691 1.432 1.592 sum 3.793 -14.046 -11.309 18.428 Atomic orbital electron populations 1.23385 0.75674 1.05112 1.01896 1.86473 1.24242 1.33577 1.84546 1.24050 0.92910 0.81155 0.72761 1.90774 1.67437 1.36874 1.43937 1.21558 0.86873 0.96105 1.08335 1.22145 0.92284 0.92919 0.92165 1.60598 1.60684 1.02265 1.06038 1.20582 0.96012 0.88671 0.94306 1.19347 0.97526 1.07714 0.94737 1.20601 0.95257 0.97278 0.96530 1.21198 1.02231 1.09236 0.93404 1.17958 0.92606 0.89359 0.92404 1.19790 0.94597 1.37474 1.01790 0.91232 1.26696 0.94967 0.93144 1.03166 1.69838 1.06095 1.35860 1.34389 0.85233 0.78778 0.79354 0.76180 1.18504 1.18996 1.18730 1.21310 0.98575 1.02007 0.97934 1.20789 0.98624 0.99581 0.92536 1.23838 0.95153 1.00585 1.01817 1.23846 0.94621 0.97547 0.88060 1.88849 1.21923 1.88839 1.31737 1.23177 0.86287 0.98278 0.93600 0.93172 0.92313 0.85302 0.84229 0.85207 0.83849 0.93704 0.92443 0.88195 0.89260 0.90331 0.87890 0.87033 0.87010 0.89345 0.92773 0.86862 0.93396 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -7.75 10.57 -51.45 -0.54 -8.29 16 3 C 0.45 10.56 7.39 71.24 0.53 11.09 16 4 O -0.50 -16.04 13.99 21.98 0.31 -15.73 16 5 C -0.09 -1.48 4.73 29.85 0.14 -1.34 16 6 C 0.10 2.07 0.60 4.55 0.00 2.07 16 7 N -0.66 -19.04 4.63 -469.08 -2.17 -21.21 16 8 C 0.13 4.32 4.12 85.56 0.35 4.67 16 9 C -0.19 -8.12 5.39 -19.67 -0.11 -8.22 16 10 C -0.08 -3.65 9.67 22.22 0.21 -3.44 16 11 C -0.24 -12.62 9.80 22.73 0.22 -12.40 16 12 C 0.08 4.42 5.55 -21.29 -0.12 4.31 16 13 C -0.51 -28.45 9.06 23.46 0.21 -28.23 16 14 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 15 C 0.03 1.73 5.27 85.26 0.45 2.18 16 16 N -0.83 -44.54 10.82 21.83 0.24 -44.30 16 17 Si 0.98 39.37 29.57 68.60 2.03 41.40 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.18 -9.47 8.66 22.73 0.20 -9.28 16 22 C -0.10 -4.34 9.67 22.22 0.21 -4.12 16 23 C -0.17 -2.90 5.72 31.90 0.18 -2.72 16 24 C 0.04 0.71 7.21 72.67 0.52 1.23 16 25 O -0.39 -9.98 11.52 -148.98 -1.72 -11.70 16 26 C 0.06 1.62 5.67 72.39 0.41 2.03 16 27 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.34 9.62 8.68 -89.69 -0.78 8.84 16 33 H 0.05 1.31 5.13 -2.39 -0.01 1.30 16 34 H 0.06 1.99 6.31 -2.39 -0.02 1.98 16 35 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 38 H 0.10 5.71 6.22 -2.91 -0.02 5.69 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.11 1.24 7.87 -2.39 -0.02 1.23 16 41 H 0.09 1.48 7.26 -2.39 -0.02 1.47 16 42 H 0.05 1.25 5.99 -2.39 -0.01 1.24 16 43 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.05 1.51 6.35 -2.39 -0.02 1.50 16 45 H 0.09 2.04 7.41 -2.39 -0.02 2.03 16 Total: -1.00 -68.24 361.85 3.00 -65.24 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.23 Total: 34.98 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.62 Total: -40.39 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.94 Total: -65.52 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.95 Total: -35.72 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -68.24 3.00 -65.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362269075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.430 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds