Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99808 * 2 1 4 4 O 1.20823 * 120.00011 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99879 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47019 * 184.01042 * 5 3 2 7 7 N 1.46893 * 110.45551 * 62.20196 * 6 5 3 8 8 C 1.46905 * 111.00002 * 61.76495 * 7 6 5 9 9 C 1.50702 * 109.47133 * 175.30073 * 8 7 6 10 10 C 1.38636 * 119.74692 * 90.00257 * 9 8 7 11 11 C 1.37622 * 120.24821 * 180.02562 * 10 9 8 12 12 C 1.40715 * 119.74356 * 0.02562 * 11 10 9 13 13 C 1.41394 * 120.24097 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99613 * 212.31342 * 13 12 11 15 15 C 1.39946 * 120.00456 * 32.31040 * 13 12 11 16 16 N 1.30825 * 119.99686 * 22.00379 * 15 13 12 17 17 Si 1.86794 * 120.00312 * 201.72959 * 15 13 12 18 18 H 1.48502 * 109.46994 * 90.00125 * 17 15 13 19 19 H 1.48499 * 109.47226 * 209.99839 * 17 15 13 20 20 H 1.48499 * 109.47281 * 330.00150 * 17 15 13 21 21 C 1.40717 * 119.51312 * 0.27361 * 12 11 10 22 22 C 1.37619 * 119.74297 * 359.46727 * 21 12 11 23 23 C 1.54513 * 110.50970 * 299.59649 * 6 5 3 24 24 C 1.54481 * 104.06121 * 241.21510 * 23 6 5 25 25 O 1.44425 * 104.80201 * 23.98314 * 24 23 6 26 26 C 1.44423 * 105.27718 * 319.48524 * 25 24 23 27 27 H 1.08992 * 109.47322 * 300.00167 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00432 * 1 2 3 29 29 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47006 * 64.01101 * 5 3 2 31 31 H 1.08996 * 109.47141 * 304.01451 * 5 3 2 32 32 H 1.00899 * 111.00249 * 185.72319 * 7 6 5 33 33 H 1.09001 * 109.46805 * 55.31015 * 8 7 6 34 34 H 1.09000 * 109.47493 * 295.30483 * 8 7 6 35 35 H 1.07996 * 119.87584 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.12270 * 180.02562 * 11 10 9 37 37 H 0.97005 * 119.99715 * 6.88856 * 16 15 13 38 38 H 1.08001 * 120.12668 * 179.70766 * 21 12 11 39 39 H 1.07999 * 119.87557 * 180.27916 * 22 21 12 40 40 H 1.08998 * 110.51044 * 359.86098 * 23 6 5 41 41 H 1.08998 * 110.50815 * 122.57204 * 23 6 5 42 42 H 1.08999 * 110.37251 * 142.80841 * 24 23 6 43 43 H 1.08990 * 110.37403 * 265.15230 * 24 23 6 44 44 H 1.08993 * 110.37410 * 281.68383 * 26 25 24 45 45 H 1.09004 * 110.37499 * 159.34524 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7387 0.1013 7 7 3.5343 3.3265 1.3644 8 6 4.1210 2.6301 2.5172 9 6 3.7133 3.3304 3.7878 10 6 2.5515 2.9492 4.4410 11 6 2.1692 3.5821 5.6018 12 6 2.9625 4.6200 6.1248 13 6 2.5799 5.2770 7.3170 14 1 2.8144 6.3220 7.4567 15 6 1.8975 4.5734 8.3158 16 7 1.9814 3.2690 8.3706 17 14 0.8732 5.4971 9.5754 18 1 -0.5170 5.6407 9.0736 19 1 0.8624 4.7423 10.8542 20 1 1.4599 6.8427 9.7998 21 6 4.1364 5.0027 5.4499 22 6 4.5020 4.3523 4.2935 23 6 3.4642 3.5463 -1.1020 24 6 4.7392 4.0607 -1.8065 25 8 5.7759 3.1340 -1.4163 26 6 5.5355 2.8606 -0.0186 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.9531 0.8440 -0.9230 31 1 3.9589 0.7200 0.8526 32 1 3.7344 4.3148 1.3988 33 1 5.2076 2.6368 2.4312 34 1 3.7646 1.6002 2.5395 35 1 1.9436 2.1532 4.0371 36 1 1.2639 3.2832 6.1092 37 1 2.5933 2.7973 7.7840 38 1 4.7501 5.8013 5.8399 39 1 5.4049 4.6413 3.7762 40 1 2.8922 2.9022 -1.7698 41 1 2.8536 4.3817 -0.7596 42 1 4.6063 4.0478 -2.8883 43 1 4.9816 5.0670 -1.4651 44 1 5.9000 3.6829 0.5970 45 1 6.0144 1.9259 0.2730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362269076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = -114.931856 kcal Electronic energy + Delta-G solvation = -27166.038393 eV Core-core repulsion = 23340.990280 eV Total energy + Delta-G solvation = -3825.048112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85347 -39.57825 -37.93175 -36.52774 -35.62895 -33.91227 -31.81334 -30.23182 -29.74983 -29.28564 -28.02056 -26.77369 -25.80414 -23.60319 -22.46033 -21.59260 -21.14018 -20.07625 -19.45921 -17.86778 -17.57273 -16.87135 -16.73036 -16.27346 -15.79517 -15.51035 -15.00966 -14.50413 -14.42034 -14.24176 -13.99981 -13.63199 -13.54981 -13.13089 -12.95338 -12.67442 -12.42254 -12.22758 -12.12723 -12.09755 -12.00724 -11.60608 -11.57875 -11.19942 -11.14561 -10.99844 -10.72550 -10.64736 -10.41555 -10.36364 -10.23593 -9.98750 -9.67719 -9.40898 -8.99947 -8.16555 -7.70241 -7.48205 -7.12045 -4.44685 2.37048 2.65124 2.71645 2.84221 3.17564 3.24418 3.35799 3.75929 4.04699 4.31193 4.35977 4.42536 4.64884 4.71163 4.92718 4.97958 5.04486 5.05914 5.15601 5.28622 5.33512 5.41373 5.48264 5.52088 5.53931 5.55968 5.69419 5.71151 5.82304 6.00636 6.07735 6.17478 6.26324 6.45607 6.55881 6.74827 6.96916 7.10376 7.23960 7.39484 7.51904 7.67581 7.76483 7.84278 7.89905 7.92858 8.21555 8.29738 8.74346 8.90545 10.12055 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003236 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.689944 B = 8651.132368 C = 9869.137424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.369 6.369 3 C 0.460 3.540 4 O -0.473 6.473 5 C -0.096 4.096 6 C 0.097 3.903 7 N -0.657 5.657 8 C 0.118 3.882 9 C -0.220 4.220 10 C -0.059 4.059 11 C -0.210 4.210 12 C 0.102 3.898 13 C -0.530 4.530 14 H 0.074 0.926 15 C 0.039 3.961 16 N -0.806 5.806 17 Si 1.068 2.932 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.223 4.223 22 C -0.077 4.077 23 C -0.134 4.134 24 C 0.038 3.962 25 O -0.375 6.375 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.346 0.654 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.297 0.703 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -4.656 -16.702 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.287 6.287 3 C 0.301 3.699 4 O -0.357 6.357 5 C -0.134 4.134 6 C 0.005 3.995 7 N -0.289 5.289 8 C -0.009 4.009 9 C -0.221 4.221 10 C -0.078 4.078 11 C -0.230 4.230 12 C 0.099 3.901 13 C -0.559 4.559 14 H 0.092 0.908 15 C -0.182 4.182 16 N -0.430 5.430 17 Si 0.892 3.108 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.243 4.243 22 C -0.096 4.096 23 C -0.172 4.172 24 C -0.039 4.039 25 O -0.293 6.293 26 C -0.060 4.060 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.364 -5.062 -15.534 16.342 hybrid contribution 1.584 0.632 -1.134 2.048 sum 1.948 -4.431 -16.668 17.356 Atomic orbital electron populations 1.23191 0.76579 1.03269 1.02549 1.86479 1.23283 1.34101 1.84850 1.23375 0.91731 0.81389 0.73407 1.90704 1.66538 1.35743 1.42714 1.21430 0.88842 0.97607 1.05545 1.22066 0.91977 0.93038 0.92449 1.60769 1.61613 1.07486 0.99053 1.20652 0.94970 0.97027 0.88238 1.18823 1.00333 1.04173 0.98779 1.20421 0.94885 0.97806 0.94736 1.21144 1.00850 1.02996 0.97987 1.17706 0.89384 0.90657 0.92349 1.20564 1.34626 0.99283 1.01389 0.90768 1.26945 0.96013 0.95634 0.99596 1.70405 1.29296 1.08807 1.34487 0.83591 0.76454 0.75360 0.75355 1.20092 1.20247 1.20259 1.20986 0.98634 1.05053 0.99602 1.20415 0.97377 0.95797 0.95970 1.22964 0.97426 1.01144 0.95659 1.23544 0.86782 0.93176 1.00361 1.89111 1.51205 1.64333 1.24645 1.24263 0.96168 1.01860 0.83709 0.91734 0.92230 0.88495 0.87405 0.87628 0.83370 0.95774 0.92017 0.89431 0.88050 0.88980 0.88938 0.89658 0.90599 0.88895 0.89104 0.92226 0.91610 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -4.62 10.57 -39.25 -0.41 -5.03 16 3 C 0.46 6.21 7.29 36.01 0.26 6.47 16 4 O -0.47 -7.63 13.73 -18.75 -0.26 -7.88 16 5 C -0.10 -1.07 4.45 -27.88 -0.12 -1.20 16 6 C 0.10 1.16 0.45 -130.03 -0.06 1.10 16 7 N -0.66 -9.70 5.17 -99.62 -0.52 -10.22 16 8 C 0.12 1.90 5.17 -4.97 -0.03 1.87 16 9 C -0.22 -4.50 5.37 -104.33 -0.56 -5.06 16 10 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 11 C -0.21 -5.38 7.96 -38.87 -0.31 -5.69 16 12 C 0.10 2.69 5.16 -106.82 -0.55 2.14 16 13 C -0.53 -14.21 8.98 -37.74 -0.34 -14.55 16 14 H 0.07 1.95 7.93 -52.49 -0.42 1.53 16 15 C 0.04 0.99 4.98 -17.34 -0.09 0.91 16 16 N -0.81 -21.73 12.50 55.55 0.69 -21.03 16 17 Si 1.07 21.96 29.98 -169.99 -5.10 16.87 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.22 -5.38 9.80 -38.87 -0.38 -5.77 16 22 C -0.08 -1.63 9.67 -39.66 -0.38 -2.01 16 23 C -0.13 -1.51 5.04 -25.16 -0.13 -1.63 16 24 C 0.04 0.38 7.63 37.93 0.29 0.67 16 25 O -0.37 -4.46 11.65 -35.23 -0.41 -4.87 16 26 C 0.02 0.21 5.56 37.93 0.21 0.42 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.11 1.12 6.53 -51.93 -0.34 0.78 16 32 H 0.35 5.22 8.58 -39.29 -0.34 4.88 16 33 H 0.02 0.35 6.80 -51.93 -0.35 0.00 16 34 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.10 2.71 6.91 -52.49 -0.36 2.35 16 37 H 0.30 8.21 6.79 -40.82 -0.28 7.93 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.08 0.85 6.97 -51.93 -0.36 0.49 16 41 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 45 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -29.70 366.34 -8.59 -38.29 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.61 Total: 10.98 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -1.50 Total: -22.62 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.18 Total: -31.25 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.08 Total: -17.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.10 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.70 -8.59 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362269076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.642 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds