Wall clock time and date at job start Tue Mar 31 2020 12:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99808 * 2 1 4 4 O 1.20823 * 120.00011 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99879 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47019 * 184.01042 * 5 3 2 7 7 N 1.46893 * 110.45551 * 62.20196 * 6 5 3 8 8 C 1.46905 * 111.00002 * 61.76495 * 7 6 5 9 9 C 1.50702 * 109.47133 * 175.30073 * 8 7 6 10 10 C 1.38636 * 119.74692 * 90.00257 * 9 8 7 11 11 C 1.37622 * 120.24821 * 180.02562 * 10 9 8 12 12 C 1.40715 * 119.74356 * 0.02562 * 11 10 9 13 13 C 1.41394 * 120.24097 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99613 * 212.31342 * 13 12 11 15 15 C 1.39946 * 120.00456 * 32.31040 * 13 12 11 16 16 N 1.30825 * 119.99686 * 22.00379 * 15 13 12 17 17 Si 1.86794 * 120.00312 * 201.72959 * 15 13 12 18 18 H 1.48502 * 109.46994 * 90.00125 * 17 15 13 19 19 H 1.48499 * 109.47226 * 209.99839 * 17 15 13 20 20 H 1.48499 * 109.47281 * 330.00150 * 17 15 13 21 21 C 1.40717 * 119.51312 * 0.27361 * 12 11 10 22 22 C 1.37619 * 119.74297 * 359.46727 * 21 12 11 23 23 C 1.54513 * 110.50970 * 299.59649 * 6 5 3 24 24 C 1.54481 * 104.06121 * 241.21510 * 23 6 5 25 25 O 1.44425 * 104.80201 * 23.98314 * 24 23 6 26 26 C 1.44423 * 105.27718 * 319.48524 * 25 24 23 27 27 H 1.08992 * 109.47322 * 300.00167 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00432 * 1 2 3 29 29 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47006 * 64.01101 * 5 3 2 31 31 H 1.08996 * 109.47141 * 304.01451 * 5 3 2 32 32 H 1.00899 * 111.00249 * 185.72319 * 7 6 5 33 33 H 1.09001 * 109.46805 * 55.31015 * 8 7 6 34 34 H 1.09000 * 109.47493 * 295.30483 * 8 7 6 35 35 H 1.07996 * 119.87584 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.12270 * 180.02562 * 11 10 9 37 37 H 0.97005 * 119.99715 * 6.88856 * 16 15 13 38 38 H 1.08001 * 120.12668 * 179.70766 * 21 12 11 39 39 H 1.07999 * 119.87557 * 180.27916 * 22 21 12 40 40 H 1.08998 * 110.51044 * 359.86098 * 23 6 5 41 41 H 1.08998 * 110.50815 * 122.57204 * 23 6 5 42 42 H 1.08999 * 110.37251 * 142.80841 * 24 23 6 43 43 H 1.08990 * 110.37403 * 265.15230 * 24 23 6 44 44 H 1.08993 * 110.37410 * 281.68383 * 26 25 24 45 45 H 1.09004 * 110.37499 * 159.34524 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7387 0.1013 7 7 3.5343 3.3265 1.3644 8 6 4.1210 2.6301 2.5172 9 6 3.7133 3.3304 3.7878 10 6 2.5515 2.9492 4.4410 11 6 2.1692 3.5821 5.6018 12 6 2.9625 4.6200 6.1248 13 6 2.5799 5.2770 7.3170 14 1 2.8144 6.3220 7.4567 15 6 1.8975 4.5734 8.3158 16 7 1.9814 3.2690 8.3706 17 14 0.8732 5.4971 9.5754 18 1 -0.5170 5.6407 9.0736 19 1 0.8624 4.7423 10.8542 20 1 1.4599 6.8427 9.7998 21 6 4.1364 5.0027 5.4499 22 6 4.5020 4.3523 4.2935 23 6 3.4642 3.5463 -1.1020 24 6 4.7392 4.0607 -1.8065 25 8 5.7759 3.1340 -1.4163 26 6 5.5355 2.8606 -0.0186 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.9531 0.8440 -0.9230 31 1 3.9589 0.7200 0.8526 32 1 3.7344 4.3148 1.3988 33 1 5.2076 2.6368 2.4312 34 1 3.7646 1.6002 2.5395 35 1 1.9436 2.1532 4.0371 36 1 1.2639 3.2832 6.1092 37 1 2.5933 2.7973 7.7840 38 1 4.7501 5.8013 5.8399 39 1 5.4049 4.6413 3.7762 40 1 2.8922 2.9022 -1.7698 41 1 2.8536 4.3817 -0.7596 42 1 4.6063 4.0478 -2.8883 43 1 4.9816 5.0670 -1.4651 44 1 5.9000 3.6829 0.5970 45 1 6.0144 1.9259 0.2730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362269076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:19 Heat of formation + Delta-G solvation = -132.738577 kcal Electronic energy + Delta-G solvation = -27166.810550 eV Core-core repulsion = 23340.990280 eV Total energy + Delta-G solvation = -3825.820270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83555 -40.54705 -39.69511 -37.55182 -36.89266 -35.60441 -33.13795 -31.49191 -31.10232 -30.91298 -29.06872 -27.82527 -27.23023 -25.06886 -23.51333 -23.02576 -22.54517 -21.77925 -20.43509 -19.79216 -18.55900 -17.89108 -17.69475 -17.25573 -16.67947 -16.66690 -16.45523 -16.04954 -16.01252 -15.55392 -15.36614 -15.05377 -14.47729 -14.31269 -14.23989 -13.99655 -13.93675 -13.74741 -13.54019 -13.19727 -12.95398 -12.89970 -12.82237 -12.61299 -12.44388 -12.20706 -12.00222 -11.87561 -11.77358 -11.69009 -11.52511 -11.29191 -11.25093 -10.89292 -10.82742 -9.60079 -9.47227 -9.19206 -9.09048 -6.46736 0.84157 0.93483 1.35638 1.48933 1.61025 1.76899 1.81868 2.33891 2.63809 2.90685 3.34052 3.42660 3.53352 3.62136 3.81264 4.06572 4.09421 4.19938 4.21379 4.23283 4.31204 4.32771 4.39686 4.46021 4.51063 4.54976 4.62038 4.71551 4.72597 4.76575 4.81946 4.87223 4.96617 5.08874 5.12604 5.21702 5.46070 5.50272 5.70190 5.72316 5.81294 5.83048 6.03693 6.17107 6.28073 6.39733 6.42044 6.79150 6.89663 6.96344 8.10217 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003236 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.689944 B = 8651.132368 C = 9869.137424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.457 3.543 4 O -0.507 6.507 5 C -0.096 4.096 6 C 0.099 3.901 7 N -0.669 5.669 8 C 0.126 3.874 9 C -0.195 4.195 10 C -0.069 4.069 11 C -0.227 4.227 12 C 0.071 3.929 13 C -0.570 4.570 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.831 5.831 17 Si 1.119 2.881 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.261 1.261 21 C -0.236 4.236 22 C -0.073 4.073 23 C -0.130 4.130 24 C 0.041 3.959 25 O -0.385 6.385 26 C 0.023 3.977 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.344 0.656 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.280 0.720 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -5.216 -18.737 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.291 6.291 3 C 0.300 3.700 4 O -0.393 6.393 5 C -0.134 4.134 6 C 0.007 3.993 7 N -0.301 5.301 8 C -0.002 4.002 9 C -0.197 4.197 10 C -0.088 4.088 11 C -0.247 4.247 12 C 0.069 3.931 13 C -0.599 4.599 14 H 0.086 0.914 15 C -0.212 4.212 16 N -0.455 5.455 17 Si 0.936 3.064 18 H -0.192 1.192 19 H -0.196 1.196 20 H -0.185 1.185 21 C -0.256 4.256 22 C -0.092 4.092 23 C -0.168 4.168 24 C -0.036 4.036 25 O -0.304 6.304 26 C -0.056 4.056 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.620 -5.637 -17.599 18.551 hybrid contribution 1.260 0.737 -0.768 1.649 sum 2.880 -4.900 -18.367 19.226 Atomic orbital electron populations 1.23401 0.75503 1.05191 1.01972 1.86479 1.24435 1.33673 1.84466 1.23887 0.92679 0.81126 0.72335 1.90696 1.67448 1.36760 1.44441 1.21556 0.87214 0.97297 1.07303 1.22108 0.92833 0.93381 0.90993 1.60648 1.62252 1.07408 0.99819 1.20574 0.96493 0.96680 0.86437 1.19339 0.98209 1.02553 0.99579 1.20642 0.96092 0.97986 0.94085 1.21065 1.00496 1.03950 0.99170 1.18002 0.90597 0.91504 0.93042 1.20738 1.37323 0.99278 1.02602 0.91403 1.28332 0.96275 0.95660 1.00930 1.70526 1.30347 1.09570 1.35106 0.82983 0.75344 0.74867 0.73190 1.19155 1.19554 1.18539 1.21215 0.98114 1.05580 1.00676 1.20786 0.98507 0.94976 0.94904 1.22888 0.97827 1.00548 0.95503 1.23623 0.85576 0.93039 1.01343 1.89110 1.51663 1.64709 1.24874 1.24239 0.95124 1.02644 0.83584 0.93348 0.91798 0.85390 0.84841 0.86603 0.83604 0.93205 0.91416 0.88420 0.90484 0.90842 0.88581 0.85802 0.90710 0.90397 0.87337 0.91696 0.91744 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -8.66 10.57 -51.40 -0.54 -9.20 16 3 C 0.46 11.52 7.29 71.24 0.52 12.04 16 4 O -0.51 -15.89 13.73 21.97 0.30 -15.59 16 5 C -0.10 -1.84 4.45 29.85 0.13 -1.71 16 6 C 0.10 2.07 0.45 4.55 0.00 2.07 16 7 N -0.67 -18.11 5.17 -469.10 -2.43 -20.53 16 8 C 0.13 3.63 5.17 85.56 0.44 4.07 16 9 C -0.20 -7.66 5.37 -19.67 -0.11 -7.76 16 10 C -0.07 -3.17 9.67 22.22 0.21 -2.95 16 11 C -0.23 -12.08 7.96 22.73 0.18 -11.90 16 12 C 0.07 3.88 5.16 -21.29 -0.11 3.77 16 13 C -0.57 -31.92 8.98 23.46 0.21 -31.71 16 14 H 0.07 3.73 7.93 -2.91 -0.02 3.70 16 15 C 0.00 0.11 4.98 85.26 0.42 0.53 16 16 N -0.83 -46.81 12.50 21.83 0.27 -46.54 16 17 Si 1.12 45.19 29.98 68.60 2.06 47.25 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.24 -11.44 9.80 22.73 0.22 -11.21 16 22 C -0.07 -2.96 9.67 22.22 0.21 -2.75 16 23 C -0.13 -2.64 5.04 31.61 0.16 -2.48 16 24 C 0.04 0.70 7.63 72.49 0.55 1.25 16 25 O -0.39 -7.83 11.65 -148.98 -1.74 -9.57 16 26 C 0.02 0.42 5.56 72.49 0.40 0.83 16 27 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.12 2.02 6.53 -2.39 -0.02 2.00 16 32 H 0.34 9.56 8.58 -89.69 -0.77 8.79 16 33 H 0.05 1.22 6.80 -2.39 -0.02 1.21 16 34 H 0.07 1.92 6.57 -2.39 -0.02 1.90 16 35 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.08 4.38 6.91 -2.91 -0.02 4.36 16 37 H 0.28 16.36 6.79 -92.70 -0.63 15.73 16 38 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.07 1.54 6.97 -2.39 -0.02 1.52 16 41 H 0.08 1.84 7.92 -2.39 -0.02 1.82 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.23 7.82 -2.39 -0.02 1.22 16 45 H 0.11 1.69 7.88 -2.38 -0.02 1.68 16 Total: -1.00 -66.98 366.34 2.96 -64.02 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.37 Total: 36.26 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.66 Total: -46.09 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -2.15 Total: -67.07 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.98 Total: -34.36 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.06 Total: 47.25 kcal Total: -66.98 2.96 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362269076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.720 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds