Wall clock time and date at job start Tue Mar 31 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99773 * 2 1 4 4 H 1.08995 * 108.44874 * 27.68375 * 3 2 1 5 5 C 1.52571 * 108.51126 * 145.23399 * 3 2 1 6 6 C 1.50887 * 109.35300 * 206.26400 * 5 3 2 7 7 C 1.53597 * 109.95167 * 268.01992 * 6 5 3 8 8 N 1.47610 * 112.34088 * 40.83822 * 7 6 5 9 9 C 1.34770 * 118.64588 * 222.03472 * 8 7 6 10 10 O 1.21588 * 120.00119 * 173.85434 * 9 8 7 11 11 C 1.47541 * 119.99878 * 353.85561 * 9 8 7 12 12 C 1.39659 * 120.19728 * 306.39784 * 11 9 8 13 13 C 1.37831 * 119.91777 * 180.02562 * 12 11 9 14 14 C 1.38578 * 120.32499 * 0.02562 * 13 12 11 15 15 C 1.38027 * 120.39924 * 359.68691 * 14 13 12 16 16 C 1.38837 * 120.07156 * 0.59363 * 15 14 13 17 17 O 1.35519 * 120.16427 * 179.70095 * 16 15 14 18 18 C 1.34817 * 116.99675 * 5.47218 * 17 16 15 19 19 H 1.07999 * 119.99907 * 354.95139 * 18 17 16 20 20 C 1.38702 * 119.99989 * 174.67745 * 18 17 16 21 21 N 1.31514 * 119.99799 * 0.27053 * 20 18 17 22 22 Si 1.86800 * 119.99792 * 180.27573 * 20 18 17 23 23 H 1.48501 * 109.46958 * 89.99910 * 22 20 18 24 24 H 1.48500 * 109.46680 * 209.99708 * 22 20 18 25 25 H 1.48498 * 109.47288 * 329.99795 * 22 20 18 26 26 C 1.44583 * 122.70998 * 41.75623 * 8 7 6 27 27 C 1.47091 * 108.51093 * 269.99726 * 3 2 1 28 28 H 1.09002 * 109.46654 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47205 * 300.00186 * 1 2 3 30 30 H 1.08997 * 109.46989 * 60.00402 * 1 2 3 31 31 H 1.09000 * 109.49032 * 326.22709 * 5 3 2 32 32 H 1.08997 * 109.48794 * 86.29844 * 5 3 2 33 33 H 1.08993 * 109.37038 * 28.30684 * 6 5 3 34 34 H 1.08996 * 109.35928 * 147.92512 * 6 5 3 35 35 H 1.08992 * 108.94381 * 280.03076 * 7 6 5 36 36 H 1.09004 * 108.75529 * 161.51924 * 7 6 5 37 37 H 1.07997 * 120.04001 * 359.97438 * 12 11 9 38 38 H 1.07998 * 119.83888 * 180.02562 * 13 12 11 39 39 H 1.07994 * 119.79993 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96355 * 180.29692 * 15 14 13 41 41 H 0.96997 * 119.99737 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.45059 * 29.56843 * 26 8 7 43 43 H 1.08996 * 109.44802 * 149.51853 * 26 8 7 44 44 H 1.09003 * 109.33055 * 55.68519 * 27 3 2 45 45 H 1.08997 * 109.33046 * 296.20853 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 1.9930 0.4804 5 6 3.2930 1.2647 0.8250 6 6 3.5734 2.6387 1.3817 7 6 4.4802 3.4194 0.4187 8 7 4.1081 3.2121 -0.9946 9 6 5.0891 3.0355 -1.9017 10 8 4.8107 2.7519 -3.0508 11 6 6.5008 3.1863 -1.5004 12 6 6.9294 4.3534 -0.8643 13 6 8.2497 4.4884 -0.4924 14 6 9.1559 3.4713 -0.7469 15 6 8.7454 2.3098 -1.3694 16 6 7.4207 2.1586 -1.7564 17 8 7.0169 1.0215 -2.3732 18 6 7.9228 0.0289 -2.4808 19 1 8.9409 0.1896 -2.1582 20 6 7.5460 -1.2006 -3.0005 21 7 6.3062 -1.3964 -3.3933 22 14 8.7994 -2.5784 -3.1424 23 1 8.7935 -3.3833 -1.8944 24 1 8.4503 -3.4484 -4.2941 25 1 10.1505 -1.9989 -3.3513 26 6 2.7345 3.1847 -1.4450 27 6 2.2002 1.7321 -1.3948 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1753 0.5569 1.6455 32 1 4.1231 0.9526 0.1913 33 1 2.6334 3.1748 1.5119 34 1 4.0695 2.5429 2.3475 35 1 5.5112 3.0974 0.5641 36 1 4.4068 4.4817 0.6518 37 1 6.2274 5.1495 -0.6649 38 1 8.5797 5.3913 -0.0002 39 1 10.1884 3.5862 -0.4521 40 1 9.4565 1.5197 -1.5600 41 1 6.0426 -2.2563 -3.7564 42 1 2.1275 3.8173 -0.7973 43 1 2.6807 3.5557 -2.4685 44 1 1.2471 1.6799 -1.9211 45 1 2.9147 1.0679 -1.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374721326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:29 Heat of formation + Delta-G solvation = -74.704205 kcal Electronic energy + Delta-G solvation = -28269.321717 eV Core-core repulsion = 24446.018006 eV Total energy + Delta-G solvation = -3823.303711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25070 -39.01598 -37.96216 -36.36613 -36.01113 -32.77053 -32.39002 -32.31426 -30.30308 -28.97000 -27.26186 -25.87575 -25.46288 -24.85033 -22.98267 -21.56128 -21.16188 -20.43750 -18.84004 -18.03833 -17.36025 -16.60085 -16.34423 -15.79931 -15.21209 -15.17050 -14.85092 -14.71987 -14.42204 -14.18432 -13.80566 -13.59439 -13.50872 -13.23418 -13.06678 -12.76262 -12.57855 -12.16177 -12.09460 -11.76941 -11.70952 -11.37952 -11.21401 -11.13760 -11.04195 -10.94409 -10.81125 -10.76654 -10.58573 -10.45370 -10.34283 -9.59698 -9.46245 -8.98975 -8.87569 -8.22002 -8.18834 -7.32642 -6.45572 -4.05793 1.83282 2.30008 3.12471 3.13143 3.18238 3.35165 3.62471 3.85660 3.93808 4.49998 4.74239 4.92788 5.04759 5.06706 5.14765 5.16953 5.23359 5.32794 5.36003 5.43063 5.45461 5.54131 5.60512 5.63160 5.70155 5.73996 5.75938 5.91917 5.96288 6.01301 6.10791 6.17343 6.22363 6.31715 6.53454 6.57122 6.62774 6.67184 6.94842 7.04880 7.12021 7.25530 7.29859 7.37052 7.68296 7.85171 7.96422 8.92866 8.96756 9.64548 10.69683 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.005701 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.032596 B = 4910.100317 C = 6813.561073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.104 3.896 4 H 0.047 0.953 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.110 3.890 8 N -0.612 5.612 9 C 0.574 3.426 10 O -0.517 6.517 11 C -0.218 4.218 12 C -0.041 4.041 13 C -0.225 4.225 14 C -0.056 4.056 15 C -0.235 4.235 16 C 0.186 3.814 17 O -0.148 6.148 18 C -0.400 4.400 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.842 5.842 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C 0.130 3.870 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.272 0.728 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 8.408 10.578 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.047 3.953 4 H 0.065 0.935 5 C -0.157 4.157 6 C -0.165 4.165 7 C -0.013 4.013 8 N -0.347 5.347 9 C 0.363 3.637 10 O -0.392 6.392 11 C -0.222 4.222 12 C -0.060 4.060 13 C -0.244 4.244 14 C -0.074 4.074 15 C -0.254 4.254 16 C 0.129 3.871 17 O -0.048 6.048 18 C -0.476 4.476 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.474 5.474 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C 0.006 3.994 27 C -0.202 4.202 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.017 7.800 9.714 14.298 hybrid contribution 0.438 -0.514 -0.024 0.676 sum -6.579 7.286 9.690 13.793 Atomic orbital electron populations 1.22737 0.81948 1.02362 0.99424 1.88028 1.18882 1.28522 1.95222 1.21062 0.94677 0.83922 0.95654 0.93529 1.21185 0.97653 0.96976 0.99872 1.21642 1.00117 0.95888 0.98848 1.21938 1.00396 0.98867 0.80093 1.47597 1.05614 1.73910 1.07587 1.18289 0.85096 0.75454 0.84814 1.90781 1.83701 1.45197 1.19512 1.18735 0.92603 0.97526 1.13370 1.20702 0.95832 0.94790 0.94693 1.20468 0.93683 1.00295 1.09924 1.20882 0.98358 0.92752 0.95418 1.21135 0.96074 1.00168 1.08033 1.19212 0.91295 0.87598 0.89031 1.84020 1.39468 1.19281 1.62011 1.21398 0.91781 0.89988 1.44423 0.88861 1.25351 0.97231 0.97657 0.96033 1.70070 1.16382 1.24351 1.36565 0.85721 0.79511 0.79854 0.78406 1.19769 1.20150 1.19074 1.21139 0.82142 0.95317 1.00834 1.21731 1.02581 0.98587 0.97302 0.90007 0.94531 0.94298 0.90979 0.89970 0.91901 0.90237 0.89000 0.92355 0.86807 0.87231 0.87207 0.85100 0.91813 0.91431 0.89874 0.91343 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.74 101.05 1.09 1.46 16 2 O -0.39 -6.22 10.18 -35.23 -0.36 -6.58 16 3 C 0.10 1.52 2.10 -29.79 -0.06 1.46 16 4 H 0.05 0.56 6.90 -51.93 -0.36 0.21 16 5 C -0.12 -1.79 5.16 -28.01 -0.14 -1.93 16 6 C -0.13 -1.48 5.71 -27.48 -0.16 -1.64 16 7 C 0.11 1.49 4.88 -3.12 -0.02 1.47 16 8 N -0.61 -10.42 2.25 -173.98 -0.39 -10.81 16 9 C 0.57 12.64 6.75 -12.47 -0.08 12.56 16 10 O -0.52 -13.74 16.24 1.53 0.02 -13.71 16 11 C -0.22 -4.68 4.43 -104.81 -0.46 -5.14 16 12 C -0.04 -0.71 7.91 -39.20 -0.31 -1.02 16 13 C -0.22 -3.62 10.03 -39.60 -0.40 -4.02 16 14 C -0.06 -0.97 10.03 -39.53 -0.40 -1.36 16 15 C -0.23 -4.99 9.16 -39.44 -0.36 -5.35 16 16 C 0.19 4.56 6.64 -38.59 -0.26 4.31 16 17 O -0.15 -4.31 8.94 -2.97 -0.03 -4.34 16 18 C -0.40 -11.26 9.49 30.90 0.29 -10.96 16 19 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 20 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 21 N -0.84 -25.32 13.67 55.48 0.76 -24.56 16 22 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C 0.13 1.96 5.34 -4.08 -0.02 1.94 16 27 C -0.16 -2.66 5.24 -28.59 -0.15 -2.81 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 31 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.08 1.58 7.48 -51.93 -0.39 1.20 16 33 H 0.06 0.62 7.31 -51.93 -0.38 0.24 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.40 5.73 -51.93 -0.30 1.10 16 36 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.11 1.63 7.61 -52.49 -0.40 1.23 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.08 1.36 7.39 -51.93 -0.38 0.97 16 44 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 45 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -34.51 360.69 -7.60 -42.11 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.48 Total: 6.71 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.54 Total: -9.91 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.37 Total: -35.37 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.36 Total: -24.63 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.51 -7.60 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374721326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.589 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds