Wall clock time and date at job start Tue Mar 31 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99773 * 2 1 4 4 H 1.08995 * 108.44874 * 27.68375 * 3 2 1 5 5 C 1.52571 * 108.51126 * 145.23399 * 3 2 1 6 6 C 1.50887 * 109.35300 * 206.26400 * 5 3 2 7 7 C 1.53597 * 109.95167 * 268.01992 * 6 5 3 8 8 N 1.47610 * 112.34088 * 40.83822 * 7 6 5 9 9 C 1.34770 * 118.64588 * 222.03472 * 8 7 6 10 10 O 1.21588 * 120.00119 * 173.85434 * 9 8 7 11 11 C 1.47541 * 119.99878 * 353.85561 * 9 8 7 12 12 C 1.39659 * 120.19728 * 306.39784 * 11 9 8 13 13 C 1.37831 * 119.91777 * 180.02562 * 12 11 9 14 14 C 1.38578 * 120.32499 * 0.02562 * 13 12 11 15 15 C 1.38027 * 120.39924 * 359.68691 * 14 13 12 16 16 C 1.38837 * 120.07156 * 0.59363 * 15 14 13 17 17 O 1.35519 * 120.16427 * 179.70095 * 16 15 14 18 18 C 1.34817 * 116.99675 * 5.47218 * 17 16 15 19 19 H 1.07999 * 119.99907 * 354.95139 * 18 17 16 20 20 C 1.38702 * 119.99989 * 174.67745 * 18 17 16 21 21 N 1.31514 * 119.99799 * 0.27053 * 20 18 17 22 22 Si 1.86800 * 119.99792 * 180.27573 * 20 18 17 23 23 H 1.48501 * 109.46958 * 89.99910 * 22 20 18 24 24 H 1.48500 * 109.46680 * 209.99708 * 22 20 18 25 25 H 1.48498 * 109.47288 * 329.99795 * 22 20 18 26 26 C 1.44583 * 122.70998 * 41.75623 * 8 7 6 27 27 C 1.47091 * 108.51093 * 269.99726 * 3 2 1 28 28 H 1.09002 * 109.46654 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47205 * 300.00186 * 1 2 3 30 30 H 1.08997 * 109.46989 * 60.00402 * 1 2 3 31 31 H 1.09000 * 109.49032 * 326.22709 * 5 3 2 32 32 H 1.08997 * 109.48794 * 86.29844 * 5 3 2 33 33 H 1.08993 * 109.37038 * 28.30684 * 6 5 3 34 34 H 1.08996 * 109.35928 * 147.92512 * 6 5 3 35 35 H 1.08992 * 108.94381 * 280.03076 * 7 6 5 36 36 H 1.09004 * 108.75529 * 161.51924 * 7 6 5 37 37 H 1.07997 * 120.04001 * 359.97438 * 12 11 9 38 38 H 1.07998 * 119.83888 * 180.02562 * 13 12 11 39 39 H 1.07994 * 119.79993 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96355 * 180.29692 * 15 14 13 41 41 H 0.96997 * 119.99737 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.45059 * 29.56843 * 26 8 7 43 43 H 1.08996 * 109.44802 * 149.51853 * 26 8 7 44 44 H 1.09003 * 109.33055 * 55.68519 * 27 3 2 45 45 H 1.08997 * 109.33046 * 296.20853 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 1.9930 0.4804 5 6 3.2930 1.2647 0.8250 6 6 3.5734 2.6387 1.3817 7 6 4.4802 3.4194 0.4187 8 7 4.1081 3.2121 -0.9946 9 6 5.0891 3.0355 -1.9017 10 8 4.8107 2.7519 -3.0508 11 6 6.5008 3.1863 -1.5004 12 6 6.9294 4.3534 -0.8643 13 6 8.2497 4.4884 -0.4924 14 6 9.1559 3.4713 -0.7469 15 6 8.7454 2.3098 -1.3694 16 6 7.4207 2.1586 -1.7564 17 8 7.0169 1.0215 -2.3732 18 6 7.9228 0.0289 -2.4808 19 1 8.9409 0.1896 -2.1582 20 6 7.5460 -1.2006 -3.0005 21 7 6.3062 -1.3964 -3.3933 22 14 8.7994 -2.5784 -3.1424 23 1 8.7935 -3.3833 -1.8944 24 1 8.4503 -3.4484 -4.2941 25 1 10.1505 -1.9989 -3.3513 26 6 2.7345 3.1847 -1.4450 27 6 2.2002 1.7321 -1.3948 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1753 0.5569 1.6455 32 1 4.1231 0.9526 0.1913 33 1 2.6334 3.1748 1.5119 34 1 4.0695 2.5429 2.3475 35 1 5.5112 3.0974 0.5641 36 1 4.4068 4.4817 0.6518 37 1 6.2274 5.1495 -0.6649 38 1 8.5797 5.3913 -0.0002 39 1 10.1884 3.5862 -0.4521 40 1 9.4565 1.5197 -1.5600 41 1 6.0426 -2.2563 -3.7564 42 1 2.1275 3.8173 -0.7973 43 1 2.6807 3.5557 -2.4685 44 1 1.2471 1.6799 -1.9211 45 1 2.9147 1.0679 -1.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374721326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:29 Heat of formation + Delta-G solvation = -99.156700 kcal Electronic energy + Delta-G solvation = -28270.382056 eV Core-core repulsion = 24446.018006 eV Total energy + Delta-G solvation = -3824.364050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74083 -40.53649 -39.45643 -38.05738 -37.40652 -34.36300 -34.11229 -33.60445 -31.80197 -30.60981 -28.40739 -27.43462 -27.00969 -26.15170 -24.42572 -23.20629 -22.55655 -21.61849 -20.32543 -19.89855 -18.84843 -18.13701 -17.75449 -17.20692 -16.66374 -16.46401 -16.30993 -16.14954 -15.90562 -15.62856 -15.50502 -15.26406 -14.70608 -14.62910 -14.52167 -14.29485 -13.96826 -13.59845 -13.46789 -13.41560 -13.08956 -12.83368 -12.65506 -12.54957 -12.42962 -12.31684 -12.20376 -12.14080 -11.91697 -11.78103 -11.54726 -11.44316 -10.85956 -10.70980 -10.58140 -9.75940 -9.58582 -9.04865 -8.49020 -6.19604 0.26900 0.71745 1.29104 1.40739 1.48442 1.75690 2.13095 2.20735 2.80525 2.82221 3.14933 3.42503 3.55719 3.67947 3.89666 4.01611 4.06991 4.13070 4.16868 4.27398 4.32731 4.40081 4.44249 4.49090 4.52820 4.55410 4.61622 4.64450 4.76751 4.82201 4.89430 4.98696 5.00928 5.06243 5.07156 5.14802 5.16424 5.25406 5.31767 5.52358 5.59303 5.70871 5.81056 5.93602 6.17569 6.32087 6.39700 6.92289 7.31885 7.75534 8.72714 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.005701 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.032596 B = 4910.100317 C = 6813.561073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.426 6.426 3 C 0.103 3.897 4 H 0.094 0.906 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.100 3.900 8 N -0.600 5.600 9 C 0.562 3.438 10 O -0.585 6.585 11 C -0.229 4.229 12 C -0.033 4.033 13 C -0.190 4.190 14 C -0.047 4.047 15 C -0.251 4.251 16 C 0.143 3.857 17 O -0.215 6.215 18 C -0.419 4.419 19 H 0.107 0.893 20 C -0.025 4.025 21 N -0.914 5.914 22 Si 1.021 2.979 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.247 1.247 26 C 0.128 3.872 27 C -0.155 4.155 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 12.456 14.660 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.346 6.346 3 C 0.047 3.953 4 H 0.112 0.888 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.020 4.020 8 N -0.332 5.332 9 C 0.352 3.648 10 O -0.465 6.465 11 C -0.234 4.234 12 C -0.051 4.051 13 C -0.208 4.208 14 C -0.065 4.065 15 C -0.271 4.271 16 C 0.090 3.910 17 O -0.119 6.119 18 C -0.495 4.495 19 H 0.125 0.875 20 C -0.223 4.223 21 N -0.551 5.551 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.170 1.170 26 C 0.004 3.996 27 C -0.194 4.194 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.579 11.929 13.889 19.455 hybrid contribution 0.297 -1.400 -1.086 1.796 sum -6.282 10.529 12.804 17.727 Atomic orbital electron populations 1.22980 0.79656 1.03496 1.01042 1.88001 1.21631 1.29652 1.95355 1.21123 0.95406 0.84475 0.94343 0.88849 1.21189 0.95783 0.99700 0.98981 1.21670 1.01774 0.93192 0.98797 1.22290 0.99852 1.01947 0.77954 1.47671 1.05388 1.71610 1.08533 1.18680 0.86513 0.74927 0.84696 1.90735 1.84715 1.48462 1.22568 1.19154 0.92216 0.98437 1.13583 1.21192 0.97520 0.93597 0.92809 1.21164 0.92357 1.00996 1.06303 1.21396 1.00892 0.91030 0.93200 1.21275 0.94595 1.02005 1.09194 1.19966 0.93545 0.87385 0.90150 1.84016 1.40785 1.21179 1.65952 1.21933 0.92468 0.90623 1.44482 0.87548 1.26742 0.99524 1.00508 0.95497 1.70277 1.19437 1.25100 1.40286 0.84572 0.77014 0.75816 0.78662 1.18533 1.19887 1.16983 1.21343 0.81805 0.95088 1.01330 1.21674 1.01136 0.98141 0.98471 0.89397 0.91670 0.93676 0.90618 0.96223 0.88034 0.87735 0.91163 0.87513 0.82679 0.81697 0.82877 0.86087 0.92124 0.85557 0.91851 0.89848 0.96834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.74 113.37 1.22 1.74 16 2 O -0.43 -14.01 10.18 -148.98 -1.52 -15.52 16 3 C 0.10 2.98 2.10 28.61 0.06 3.04 16 4 H 0.09 1.85 6.90 -2.39 -0.02 1.83 16 5 C -0.12 -3.59 5.16 29.76 0.15 -3.43 16 6 C -0.12 -2.28 5.71 30.11 0.17 -2.11 16 7 C 0.10 2.41 4.88 86.37 0.42 2.84 16 8 N -0.60 -20.41 2.25 -822.61 -1.85 -22.26 16 9 C 0.56 26.27 6.75 86.70 0.59 26.85 16 10 O -0.58 -34.31 16.24 -0.39 -0.01 -34.31 16 11 C -0.23 -10.10 4.43 -19.99 -0.09 -10.19 16 12 C -0.03 -1.01 7.91 22.52 0.18 -0.83 16 13 C -0.19 -5.03 10.03 22.25 0.22 -4.80 16 14 C -0.05 -1.46 10.03 22.30 0.22 -1.24 16 15 C -0.25 -10.84 9.16 22.36 0.20 -10.63 16 16 C 0.14 7.43 6.64 22.91 0.15 7.59 16 17 O -0.21 -13.90 8.94 -16.48 -0.15 -14.05 16 18 C -0.42 -25.77 9.49 67.93 0.64 -25.12 16 19 H 0.11 5.87 5.21 -2.91 -0.02 5.86 16 20 C -0.02 -1.49 5.49 84.85 0.47 -1.02 16 21 N -0.91 -61.14 13.67 21.62 0.30 -60.84 16 22 Si 1.02 45.35 29.55 68.60 2.03 47.38 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 26 C 0.13 3.81 5.34 87.37 0.47 4.28 16 27 C -0.16 -5.35 5.24 29.39 0.15 -5.20 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 30 H 0.04 0.91 7.57 -2.39 -0.02 0.89 16 31 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 32 H 0.02 0.81 7.48 -2.39 -0.02 0.80 16 33 H 0.10 1.30 7.31 -2.39 -0.02 1.28 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 2.01 5.73 -2.39 -0.01 2.00 16 36 H 0.11 1.63 8.03 -2.38 -0.02 1.61 16 37 H 0.16 3.51 7.61 -2.91 -0.02 3.49 16 38 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 41 H 0.27 16.63 8.31 -92.71 -0.77 15.86 16 42 H 0.13 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.06 2.16 7.39 -2.39 -0.02 2.14 16 44 H 0.08 2.52 7.53 -2.39 -0.02 2.51 16 45 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -94.25 360.69 5.03 -89.22 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 1.00 Total: 28.65 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 5.23 Total: -18.26 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -1.55 Total: -83.10 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -1.67 Total: -63.89 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -94.25 5.03 -89.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374721326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.940 kcal (2) G-P(sol) polarization free energy of solvation -94.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds