Wall clock time and date at job start Tue Mar 31 2020 12:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00109 * 2 1 4 4 C 1.52995 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47332 * 64.99579 * 4 3 2 6 6 C 1.37098 * 120.00139 * 264.47633 * 5 4 3 7 7 H 1.07996 * 120.00316 * 138.08841 * 6 5 4 8 8 C 1.38950 * 119.99840 * 318.08575 * 6 5 4 9 9 N 1.31414 * 120.00522 * 342.09859 * 8 6 5 10 10 Si 1.86803 * 119.99798 * 162.10031 * 8 6 5 11 11 H 1.48493 * 109.47313 * 89.99974 * 10 8 6 12 12 H 1.48507 * 109.47109 * 210.00047 * 10 8 6 13 13 H 1.48496 * 109.46984 * 329.99716 * 10 8 6 14 14 C 1.34773 * 119.99827 * 84.47905 * 5 4 3 15 15 O 1.21296 * 120.00124 * 359.97438 * 14 5 4 16 16 C 1.50706 * 120.00161 * 180.02562 * 14 5 4 17 17 H 1.09002 * 115.56005 * 34.30169 * 16 14 5 18 18 C 1.53078 * 117.49033 * 248.60068 * 16 14 5 19 19 C 1.52999 * 117.50120 * 179.97438 * 16 14 5 20 20 H 1.09003 * 117.49591 * 359.97438 * 19 16 14 21 21 C 1.50692 * 117.49981 * 214.97749 * 19 16 14 22 22 C 1.38173 * 120.02885 * 300.32219 * 21 19 16 23 23 C 1.38245 * 120.05650 * 180.25096 * 22 21 19 24 24 C 1.38289 * 120.11151 * 359.74333 * 23 22 21 25 25 C 1.38127 * 120.05309 * 0.02562 * 24 23 22 26 26 C 1.38709 * 120.02858 * 120.08449 * 21 19 16 27 27 O 1.35892 * 120.05790 * 0.02834 * 26 21 19 28 28 C 1.42907 * 117.00493 * 179.72321 * 27 26 21 29 29 H 1.08999 * 109.47279 * 60.00020 * 1 2 3 30 30 H 1.08993 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47014 * 300.00128 * 1 2 3 32 32 H 1.08996 * 109.47310 * 60.00026 * 3 2 1 33 33 H 1.09000 * 109.46963 * 299.99972 * 3 2 1 34 34 H 1.09007 * 109.47081 * 304.99924 * 4 3 2 35 35 H 1.09002 * 109.47274 * 185.00243 * 4 3 2 36 36 H 0.96997 * 120.00301 * 179.97438 * 9 8 6 37 37 H 1.09002 * 117.50695 * 145.03566 * 18 16 14 38 38 H 1.08996 * 117.49216 * 359.97438 * 18 16 14 39 39 H 1.07995 * 119.97040 * 359.97426 * 22 21 19 40 40 H 1.07998 * 119.94306 * 179.72145 * 23 22 21 41 41 H 1.07998 * 119.97358 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.02433 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47033 * 59.99797 * 28 27 26 44 44 H 1.08998 * 109.46842 * 180.02562 * 28 27 26 45 45 H 1.08992 * 109.46519 * 300.00101 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2060 -0.7861 -1.3047 7 1 3.8751 -1.3579 -2.1590 8 6 4.8654 -1.4193 -0.2582 9 7 5.5705 -0.7134 0.5971 10 14 4.7497 -3.2739 -0.0672 11 1 5.8524 -3.9192 -0.8239 12 1 4.8600 -3.6313 1.3700 13 1 3.4445 -3.7454 -0.5957 14 6 4.1543 1.3213 -2.3533 15 8 3.9501 2.5161 -2.3074 16 6 4.6067 0.6832 -3.6415 17 1 4.2358 -0.3258 -3.8221 18 6 6.0145 1.0189 -4.1402 19 6 4.7906 1.5959 -4.8556 20 1 4.5841 2.6579 -4.7227 21 6 4.4456 1.0310 -6.2094 22 6 5.1036 -0.0894 -6.6793 23 6 4.7911 -0.6050 -7.9233 24 6 3.8160 -0.0043 -8.6984 25 6 3.1521 1.1132 -8.2311 26 6 3.4638 1.6326 -6.9828 27 8 2.8122 2.7321 -6.5211 28 6 1.8173 3.3025 -7.3738 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 6.0305 -1.1554 1.3278 37 1 6.5696 0.2308 -4.6490 38 1 6.6126 1.7015 -3.5365 39 1 5.8657 -0.5602 -6.0760 40 1 5.3097 -1.4782 -8.2907 41 1 3.5740 -0.4087 -9.6701 42 1 2.3909 1.5822 -8.8370 43 1 1.0409 2.5634 -7.5713 44 1 1.3763 4.1720 -6.8865 45 1 2.2764 3.6074 -8.3142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413855535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:40 Heat of formation + Delta-G solvation = -55.731048 kcal Electronic energy + Delta-G solvation = -27336.490508 eV Core-core repulsion = 23514.009536 eV Total energy + Delta-G solvation = -3822.480973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22814 -38.83370 -37.51522 -36.96108 -35.66262 -34.44185 -31.49954 -30.61462 -30.01212 -29.18056 -27.19764 -25.83706 -24.77117 -23.84387 -23.32670 -21.90816 -21.12767 -20.02732 -18.85991 -18.00956 -16.96331 -16.35151 -15.91578 -15.62484 -15.59636 -15.33476 -15.15612 -14.43053 -14.35674 -14.32534 -14.11119 -13.88262 -13.60058 -13.22984 -12.78239 -12.67771 -12.15529 -11.95093 -11.89145 -11.64997 -11.35594 -11.14067 -11.13485 -11.07493 -11.02950 -10.94644 -10.68809 -10.53168 -10.30438 -10.17093 -9.91543 -9.66701 -9.05350 -8.91986 -8.63392 -8.35381 -7.86621 -7.36341 -6.24888 -3.95139 1.40894 1.55350 3.20957 3.30360 3.36761 3.40496 3.69071 3.92054 4.22359 4.53058 4.63257 4.71075 4.85626 5.01372 5.09615 5.13202 5.14084 5.17803 5.41063 5.46176 5.49696 5.60705 5.68295 5.73354 5.75412 5.77026 5.83289 6.01568 6.06470 6.13142 6.18675 6.25972 6.37777 6.40227 6.45649 6.52340 6.61615 6.71078 6.84180 6.90228 6.96972 7.28871 7.53488 7.56931 7.88225 8.10056 8.47180 9.21943 9.61238 10.03617 10.79891 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004253 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.294365 B = 6582.694934 C = 7539.213578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.425 5.425 6 C -0.319 4.319 7 H 0.083 0.917 8 C 0.049 3.951 9 N -0.868 5.868 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.501 3.499 15 O -0.607 6.607 16 C -0.127 4.127 17 H 0.116 0.884 18 C -0.145 4.145 19 C -0.098 4.098 20 H 0.123 0.877 21 C -0.068 4.068 22 C -0.084 4.084 23 C -0.155 4.155 24 C -0.093 4.093 25 C -0.210 4.210 26 C 0.132 3.868 27 O -0.305 6.305 28 C 0.028 3.972 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 1.613 -12.811 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.002 4.002 5 N -0.142 5.142 6 C -0.447 4.447 7 H 0.101 0.899 8 C -0.156 4.156 9 N -0.505 5.505 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.290 3.710 15 O -0.494 6.494 16 C -0.148 4.148 17 H 0.134 0.866 18 C -0.183 4.183 19 C -0.116 4.116 20 H 0.141 0.859 21 C -0.068 4.068 22 C -0.102 4.102 23 C -0.173 4.173 24 C -0.111 4.111 25 C -0.229 4.229 26 C 0.087 3.913 27 O -0.218 6.218 28 C -0.067 4.067 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.892 2.091 -12.374 13.469 hybrid contribution -0.545 -0.885 -0.019 1.039 sum -5.437 1.206 -12.393 13.587 Atomic orbital electron populations 1.22639 0.83466 1.01692 0.98812 1.88129 1.17353 1.27806 1.95042 1.23062 0.96652 0.84274 0.98680 1.21341 0.89006 0.98854 0.90978 1.43169 1.56445 1.07351 1.07256 1.19188 1.36089 0.82057 1.07353 0.89899 1.25304 0.93842 0.99589 0.96885 1.69922 1.27988 1.36470 1.16089 0.86180 0.78732 0.83607 0.77563 1.20561 1.20943 1.19351 1.19566 0.80266 0.85742 0.85452 1.90508 1.57544 1.15427 1.85887 1.22094 1.00439 0.99664 0.92631 0.86620 1.22949 0.90207 1.02848 1.02255 1.20891 1.02837 0.99806 0.88099 0.85924 1.18662 0.96388 0.96389 0.95397 1.20997 0.98944 0.94531 0.95716 1.20997 0.99841 1.01274 0.95235 1.20842 0.95853 0.95086 0.99359 1.21154 1.04721 1.00646 0.96400 1.18827 0.92631 0.87531 0.92346 1.86201 1.50617 1.40588 1.44381 1.23024 0.90296 0.98542 0.94868 0.95010 0.90454 0.95188 0.94340 0.93972 0.87595 0.91286 0.92304 0.88557 0.88420 0.84940 0.86072 0.86233 0.85783 0.92918 0.88366 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.37 -8.00 10.44 -35.23 -0.37 -8.36 16 3 C 0.05 1.10 6.24 37.16 0.23 1.33 16 4 C 0.12 2.99 5.26 -4.05 -0.02 2.97 16 5 N -0.43 -11.00 2.45 -114.81 -0.28 -11.28 16 6 C -0.32 -8.31 8.30 -14.93 -0.12 -8.44 16 7 H 0.08 2.12 6.77 -52.49 -0.36 1.76 16 8 C 0.05 1.27 4.95 -17.47 -0.09 1.18 16 9 N -0.87 -23.38 11.66 55.50 0.65 -22.74 16 10 Si 0.91 20.29 29.59 -169.99 -5.03 15.26 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.50 12.66 7.38 -10.98 -0.08 12.58 16 15 O -0.61 -16.40 15.93 5.54 0.09 -16.32 16 16 C -0.13 -2.73 4.93 -91.73 -0.45 -3.18 16 17 H 0.12 2.45 6.88 -51.93 -0.36 2.10 16 18 C -0.15 -2.67 9.57 -26.66 -0.26 -2.93 16 19 C -0.10 -1.85 5.26 -91.75 -0.48 -2.33 16 20 H 0.12 2.56 7.29 -51.93 -0.38 2.19 16 21 C -0.07 -1.12 5.62 -104.48 -0.59 -1.71 16 22 C -0.08 -1.21 9.29 -39.60 -0.37 -1.58 16 23 C -0.16 -1.92 10.04 -39.56 -0.40 -2.31 16 24 C -0.09 -1.09 10.04 -39.60 -0.40 -1.49 16 25 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 26 C 0.13 2.06 6.66 -39.22 -0.26 1.80 16 27 O -0.31 -4.84 9.68 -19.40 -0.19 -5.02 16 28 C 0.03 0.30 9.81 101.05 0.99 1.29 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 2.76 5.82 -51.93 -0.30 2.46 16 35 H 0.07 1.70 7.59 -51.93 -0.39 1.31 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.10 1.50 6.19 -51.93 -0.32 1.18 16 38 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.13 1.76 6.03 -52.49 -0.32 1.44 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.26 6.30 -52.48 -0.33 0.93 16 43 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -31.79 374.08 -7.52 -39.31 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.49 Total: 7.74 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.53 Total: -4.23 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.37 Total: -34.02 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.47 Total: -29.70 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.79 -7.52 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413855535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds