Wall clock time and date at job start Tue Mar 31 2020 12:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00109 * 2 1 4 4 C 1.52995 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47332 * 64.99579 * 4 3 2 6 6 C 1.37098 * 120.00139 * 264.47633 * 5 4 3 7 7 H 1.07996 * 120.00316 * 138.08841 * 6 5 4 8 8 C 1.38950 * 119.99840 * 318.08575 * 6 5 4 9 9 N 1.31414 * 120.00522 * 342.09859 * 8 6 5 10 10 Si 1.86803 * 119.99798 * 162.10031 * 8 6 5 11 11 H 1.48493 * 109.47313 * 89.99974 * 10 8 6 12 12 H 1.48507 * 109.47109 * 210.00047 * 10 8 6 13 13 H 1.48496 * 109.46984 * 329.99716 * 10 8 6 14 14 C 1.34773 * 119.99827 * 84.47905 * 5 4 3 15 15 O 1.21296 * 120.00124 * 359.97438 * 14 5 4 16 16 C 1.50706 * 120.00161 * 180.02562 * 14 5 4 17 17 H 1.09002 * 115.56005 * 34.30169 * 16 14 5 18 18 C 1.53078 * 117.49033 * 248.60068 * 16 14 5 19 19 C 1.52999 * 117.50120 * 179.97438 * 16 14 5 20 20 H 1.09003 * 117.49591 * 359.97438 * 19 16 14 21 21 C 1.50692 * 117.49981 * 214.97749 * 19 16 14 22 22 C 1.38173 * 120.02885 * 300.32219 * 21 19 16 23 23 C 1.38245 * 120.05650 * 180.25096 * 22 21 19 24 24 C 1.38289 * 120.11151 * 359.74333 * 23 22 21 25 25 C 1.38127 * 120.05309 * 0.02562 * 24 23 22 26 26 C 1.38709 * 120.02858 * 120.08449 * 21 19 16 27 27 O 1.35892 * 120.05790 * 0.02834 * 26 21 19 28 28 C 1.42907 * 117.00493 * 179.72321 * 27 26 21 29 29 H 1.08999 * 109.47279 * 60.00020 * 1 2 3 30 30 H 1.08993 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47014 * 300.00128 * 1 2 3 32 32 H 1.08996 * 109.47310 * 60.00026 * 3 2 1 33 33 H 1.09000 * 109.46963 * 299.99972 * 3 2 1 34 34 H 1.09007 * 109.47081 * 304.99924 * 4 3 2 35 35 H 1.09002 * 109.47274 * 185.00243 * 4 3 2 36 36 H 0.96997 * 120.00301 * 179.97438 * 9 8 6 37 37 H 1.09002 * 117.50695 * 145.03566 * 18 16 14 38 38 H 1.08996 * 117.49216 * 359.97438 * 18 16 14 39 39 H 1.07995 * 119.97040 * 359.97426 * 22 21 19 40 40 H 1.07998 * 119.94306 * 179.72145 * 23 22 21 41 41 H 1.07998 * 119.97358 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.02433 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47033 * 59.99797 * 28 27 26 44 44 H 1.08998 * 109.46842 * 180.02562 * 28 27 26 45 45 H 1.08992 * 109.46519 * 300.00101 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2060 -0.7861 -1.3047 7 1 3.8751 -1.3579 -2.1590 8 6 4.8654 -1.4193 -0.2582 9 7 5.5705 -0.7134 0.5971 10 14 4.7497 -3.2739 -0.0672 11 1 5.8524 -3.9192 -0.8239 12 1 4.8600 -3.6313 1.3700 13 1 3.4445 -3.7454 -0.5957 14 6 4.1543 1.3213 -2.3533 15 8 3.9501 2.5161 -2.3074 16 6 4.6067 0.6832 -3.6415 17 1 4.2358 -0.3258 -3.8221 18 6 6.0145 1.0189 -4.1402 19 6 4.7906 1.5959 -4.8556 20 1 4.5841 2.6579 -4.7227 21 6 4.4456 1.0310 -6.2094 22 6 5.1036 -0.0894 -6.6793 23 6 4.7911 -0.6050 -7.9233 24 6 3.8160 -0.0043 -8.6984 25 6 3.1521 1.1132 -8.2311 26 6 3.4638 1.6326 -6.9828 27 8 2.8122 2.7321 -6.5211 28 6 1.8173 3.3025 -7.3738 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 6.0305 -1.1554 1.3278 37 1 6.5696 0.2308 -4.6490 38 1 6.6126 1.7015 -3.5365 39 1 5.8657 -0.5602 -6.0760 40 1 5.3097 -1.4782 -8.2907 41 1 3.5740 -0.4087 -9.6701 42 1 2.3909 1.5822 -8.8370 43 1 1.0409 2.5634 -7.5713 44 1 1.3763 4.1720 -6.8865 45 1 2.2764 3.6074 -8.3142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413855535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:39 Heat of formation + Delta-G solvation = -74.391569 kcal Electronic energy + Delta-G solvation = -27337.299689 eV Core-core repulsion = 23514.009536 eV Total energy + Delta-G solvation = -3823.290154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40461 -40.57302 -38.89648 -38.37968 -37.16561 -36.38826 -33.49903 -31.80768 -31.00865 -30.89887 -28.09066 -27.32224 -26.72601 -25.38672 -24.70721 -23.08751 -22.73396 -21.35519 -20.77626 -19.10817 -18.71574 -18.04997 -17.23555 -17.12082 -16.91796 -16.61735 -16.53223 -16.18968 -16.05709 -15.86380 -15.36535 -15.24180 -15.05494 -14.51535 -14.41905 -13.74447 -13.69568 -13.48980 -13.25800 -13.04502 -12.88257 -12.87926 -12.81661 -12.56228 -12.44822 -12.21820 -12.08022 -11.97659 -11.82539 -11.78432 -11.48789 -11.21186 -10.96954 -10.57583 -10.35126 -9.66910 -9.38262 -8.98142 -8.23246 -5.99877 0.36434 0.53261 1.44218 1.50314 1.61982 1.92296 2.35646 2.46187 2.69228 2.91315 3.01020 3.10739 3.30241 3.71981 3.92027 4.00816 4.11340 4.16355 4.22170 4.24915 4.30682 4.38289 4.38997 4.48201 4.50310 4.51689 4.58730 4.60369 4.61381 4.70387 4.72030 4.76355 4.82243 4.89966 5.10637 5.17744 5.19997 5.29635 5.44355 5.53916 5.57905 5.67753 5.93730 6.06534 6.37748 6.45968 6.53957 7.20583 7.62384 8.05118 8.82253 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.004253 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.294365 B = 6582.694934 C = 7539.213578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.120 3.880 5 N -0.435 5.435 6 C -0.330 4.330 7 H 0.084 0.916 8 C 0.010 3.990 9 N -0.898 5.898 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.486 3.514 15 O -0.637 6.637 16 C -0.150 4.150 17 H 0.116 0.884 18 C -0.131 4.131 19 C -0.077 4.077 20 H 0.093 0.907 21 C -0.102 4.102 22 C -0.090 4.090 23 C -0.155 4.155 24 C -0.084 4.084 25 C -0.210 4.210 26 C 0.112 3.888 27 O -0.342 6.342 28 C 0.019 3.981 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.269 0.731 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -0.429 -15.101 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.013 4.013 4 C -0.004 4.004 5 N -0.151 5.151 6 C -0.458 4.458 7 H 0.102 0.898 8 C -0.192 4.192 9 N -0.536 5.536 10 Si 0.802 3.198 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.276 3.724 15 O -0.526 6.526 16 C -0.171 4.171 17 H 0.134 0.866 18 C -0.168 4.168 19 C -0.096 4.096 20 H 0.111 0.889 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.173 4.173 24 C -0.102 4.102 25 C -0.228 4.228 26 C 0.067 3.933 27 O -0.256 6.256 28 C -0.075 4.075 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.168 0.832 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.687 0.048 -14.673 15.737 hybrid contribution -0.369 -0.193 0.638 0.762 sum -6.056 -0.145 -14.035 15.286 Atomic orbital electron populations 1.22895 0.80581 1.03428 1.00221 1.88056 1.20543 1.27699 1.95306 1.22808 0.94495 0.84652 0.99374 1.21295 0.91356 0.97537 0.90234 1.43395 1.56449 1.07615 1.07653 1.19376 1.36445 0.82184 1.07811 0.89835 1.26083 0.93129 1.03759 0.96254 1.70025 1.28674 1.38262 1.16617 0.85178 0.78897 0.78287 0.77441 1.19370 1.20848 1.19142 1.20259 0.79825 0.85611 0.86665 1.90463 1.58841 1.16682 1.86620 1.21969 1.02990 1.00020 0.92072 0.86647 1.23048 0.89272 1.03100 1.01390 1.20665 1.02150 0.97801 0.88939 0.88916 1.18657 0.98725 0.98350 0.94560 1.21148 0.98912 0.93846 0.96851 1.21369 0.99828 1.01871 0.94205 1.21334 0.94423 0.93959 1.00475 1.21484 1.05124 1.00859 0.95341 1.19100 0.92828 0.87866 0.93523 1.86149 1.51837 1.41112 1.46524 1.23304 0.89832 0.99038 0.95306 0.94507 0.88619 0.92782 0.91315 0.95374 0.89233 0.92686 0.92113 0.85300 0.89809 0.84391 0.83121 0.82545 0.83183 0.91659 0.87499 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.36 10.44 -148.98 -1.56 -18.91 16 3 C 0.06 2.82 6.24 71.98 0.45 3.27 16 4 C 0.12 6.12 5.26 86.38 0.45 6.58 16 5 N -0.43 -23.39 2.45 -635.54 -1.56 -24.95 16 6 C -0.33 -17.59 8.30 84.04 0.70 -16.89 16 7 H 0.08 4.35 6.77 -2.91 -0.02 4.33 16 8 C 0.01 0.53 4.95 84.93 0.42 0.95 16 9 N -0.90 -49.32 11.66 21.66 0.25 -49.07 16 10 Si 0.98 41.42 29.59 68.60 2.03 43.45 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 14 C 0.49 25.85 7.38 87.66 0.65 26.50 16 15 O -0.64 -36.55 15.93 -3.08 -0.05 -36.60 16 16 C -0.15 -6.67 4.93 -11.51 -0.06 -6.72 16 17 H 0.12 5.06 6.88 -2.39 -0.02 5.04 16 18 C -0.13 -4.95 9.57 30.64 0.29 -4.65 16 19 C -0.08 -3.03 5.26 -11.53 -0.06 -3.09 16 20 H 0.09 4.18 7.29 -2.39 -0.02 4.16 16 21 C -0.10 -3.40 5.62 -19.77 -0.11 -3.51 16 22 C -0.09 -2.44 9.29 22.26 0.21 -2.23 16 23 C -0.15 -3.29 10.04 22.28 0.22 -3.07 16 24 C -0.08 -1.64 10.04 22.26 0.22 -1.41 16 25 C -0.21 -4.78 9.04 22.37 0.20 -4.58 16 26 C 0.11 3.45 6.66 22.51 0.15 3.60 16 27 O -0.34 -11.06 9.68 -92.34 -0.89 -11.95 16 28 C 0.02 0.39 9.81 113.37 1.11 1.51 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 4.86 5.82 -2.38 -0.01 4.84 16 35 H 0.05 2.88 7.59 -2.39 -0.02 2.86 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.13 3.94 6.19 -2.39 -0.01 3.92 16 38 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.14 3.44 6.03 -2.91 -0.02 3.42 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 43 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 Total: -1.00 -72.06 374.08 5.32 -66.74 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.99 Total: 33.02 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.10 Total: -1.73 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.31 Total: -74.02 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -2.50 Total: -67.46 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -72.06 5.32 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413855535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.656 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds