Wall clock time and date at job start Tue Mar 31 2020 12:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00356 * 2 1 4 4 C 1.52995 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47319 * 64.99965 * 4 3 2 6 6 C 1.36937 * 120.00390 * 275.00429 * 5 4 3 7 7 H 1.07996 * 120.00229 * 146.20874 * 6 5 4 8 8 C 1.38814 * 119.99510 * 326.20716 * 6 5 4 9 9 N 1.31619 * 120.00333 * 335.57600 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 155.58114 * 8 6 5 11 11 H 1.48501 * 109.47306 * 85.00470 * 10 8 6 12 12 H 1.48504 * 109.47092 * 205.00291 * 10 8 6 13 13 H 1.48497 * 109.47116 * 325.00526 * 10 8 6 14 14 S 1.65602 * 119.99727 * 94.99936 * 5 4 3 15 15 O 1.42104 * 104.27675 * 148.00594 * 14 5 4 16 16 O 1.42095 * 104.27597 * 20.14842 * 14 5 4 17 17 C 1.81403 * 104.45173 * 264.07471 * 14 5 4 18 18 C 1.52998 * 109.47275 * 180.02562 * 17 14 5 19 19 C 1.53000 * 109.47010 * 180.02562 * 18 17 14 20 20 C 1.52993 * 109.47052 * 64.99857 * 19 18 17 21 21 C 1.53000 * 109.47052 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47023 * 299.99849 * 21 20 19 23 23 C 1.52999 * 109.46863 * 59.99947 * 22 21 20 24 24 C 1.53000 * 109.47344 * 299.99857 * 23 22 21 25 25 H 1.09004 * 109.47379 * 299.99907 * 1 2 3 26 26 H 1.09003 * 109.47260 * 60.00018 * 1 2 3 27 27 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46680 * 60.00140 * 3 2 1 29 29 H 1.08998 * 109.46747 * 300.00659 * 3 2 1 30 30 H 1.09003 * 109.46915 * 304.99831 * 4 3 2 31 31 H 1.08998 * 109.47341 * 185.00598 * 4 3 2 32 32 H 0.97000 * 120.00036 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.46851 * 59.99977 * 17 14 5 34 34 H 1.09001 * 109.47011 * 299.99989 * 17 14 5 35 35 H 1.09002 * 109.46977 * 59.99820 * 18 17 14 36 36 H 1.09000 * 109.46780 * 300.00388 * 18 17 14 37 37 H 1.08998 * 109.47186 * 304.99673 * 19 18 17 38 38 H 1.08997 * 109.47532 * 300.00004 * 20 19 18 39 39 H 1.09008 * 109.47567 * 60.00328 * 20 19 18 40 40 H 1.09000 * 109.47264 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47186 * 59.99817 * 21 20 19 42 42 H 1.08997 * 109.47599 * 300.00223 * 22 21 20 43 43 H 1.08999 * 109.47523 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46921 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47173 * 60.00104 * 23 22 21 46 46 H 1.08998 * 109.47186 * 300.00274 * 24 23 22 47 47 H 1.09000 * 109.47264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9987 -0.7997 -1.3700 7 1 3.7803 -1.2637 -2.3205 8 6 4.3028 -1.5861 -0.2672 9 7 5.0151 -1.0871 0.7207 10 14 3.7011 -3.3527 -0.1854 11 1 4.6581 -4.2352 -0.9000 12 1 3.6021 -3.7767 1.2344 13 1 2.3647 -3.4506 -0.8256 14 16 4.4453 1.5130 -2.5262 15 8 5.4456 0.7470 -3.1836 16 8 4.7543 2.7671 -1.9337 17 6 2.9624 1.6466 -3.5623 18 6 3.2720 2.5095 -4.7872 19 6 2.0210 2.6227 -5.6607 20 6 0.9325 3.3794 -4.8971 21 6 -0.3187 3.4920 -5.7704 22 6 0.0227 4.2489 -7.0556 23 6 1.1113 3.4921 -7.8192 24 6 2.3625 3.3795 -6.9459 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1764 0.0890 32 1 5.2278 -1.6367 1.4911 33 1 2.1579 2.1058 -2.9878 34 1 2.6553 0.6524 -3.8870 35 1 4.0764 2.0499 -5.3615 36 1 3.5794 3.5037 -4.4628 37 1 1.6617 1.6247 -5.9118 38 1 0.6889 2.8401 -3.9818 39 1 1.2917 4.3775 -4.6460 40 1 -1.0941 4.0315 -5.2266 41 1 -0.6778 2.4938 -6.0211 42 1 0.3819 5.2470 -6.8049 43 1 -0.8685 4.3287 -7.6780 44 1 1.3542 4.0310 -8.7349 45 1 0.7522 2.4939 -8.0699 46 1 2.7216 4.3776 -6.6952 47 1 3.1379 2.8400 -7.4897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414462879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:06 Heat of formation + Delta-G solvation = -136.583030 kcal Electronic energy + Delta-G solvation = -26853.776501 eV Core-core repulsion = 23163.233474 eV Total energy + Delta-G solvation = -3690.543026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -38.91040 -37.36116 -35.91352 -35.16425 -34.69600 -34.02661 -31.35724 -30.88930 -29.17010 -28.74032 -25.79757 -24.23873 -24.04890 -22.62020 -21.59344 -20.74222 -19.82732 -18.29349 -17.19353 -16.53024 -15.91417 -15.45898 -15.31983 -15.22182 -14.96909 -14.47362 -14.31768 -14.23132 -14.12352 -14.05271 -13.53991 -13.17537 -12.78422 -12.29004 -12.22882 -12.00903 -11.90607 -11.79315 -11.53482 -11.29619 -11.21548 -11.15635 -11.01271 -10.95765 -10.84845 -10.80500 -10.69723 -10.55349 -10.39867 -10.33308 -10.03750 -9.99505 -9.94014 -9.66807 -8.95675 -8.86736 -7.56189 -6.09348 -3.73087 1.36251 3.34373 3.39679 3.45552 3.97927 4.47410 4.55612 4.56363 4.58633 4.64442 4.84119 4.94513 5.02085 5.11351 5.23779 5.24090 5.33157 5.39154 5.41850 5.48339 5.55309 5.62099 5.65436 5.69018 5.74464 5.84254 5.87747 5.90136 5.93120 6.01302 6.03439 6.03977 6.09811 6.13646 6.15172 6.21927 6.29383 6.35950 6.44451 6.51382 7.19954 7.46707 7.78637 8.04784 8.54514 9.20041 9.54953 10.94635 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004266 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.240874 B = 6562.022457 C = 7114.460057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.050 3.950 4 C 0.115 3.885 5 N -0.840 5.840 6 C -0.268 4.268 7 H 0.084 0.916 8 C 0.049 3.951 9 N -0.862 5.862 10 Si 0.914 3.086 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.271 1.271 14 S 2.551 3.449 15 O -0.968 6.968 16 O -0.998 6.998 17 C -0.629 4.629 18 C -0.106 4.106 19 C -0.078 4.078 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.028 0.972 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 7.837 -9.284 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.269 6.269 3 C -0.029 4.029 4 C -0.013 4.013 5 N -0.670 5.670 6 C -0.404 4.404 7 H 0.102 0.898 8 C -0.157 4.157 9 N -0.502 5.502 10 Si 0.741 3.259 11 H -0.209 1.209 12 H -0.212 1.212 13 H -0.196 1.196 14 S 2.652 3.348 15 O -0.957 6.957 16 O -0.988 6.988 17 C -0.755 4.755 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.140 0.860 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.671 8.101 -9.346 16.336 hybrid contribution -1.331 -0.769 0.012 1.537 sum -12.003 7.332 -9.334 16.880 Atomic orbital electron populations 1.22671 0.84048 1.01721 0.98587 1.88255 1.16660 1.27084 1.94852 1.23204 0.97232 0.84633 0.97816 1.21440 0.88829 0.98890 0.92158 1.52503 1.77280 1.13753 1.23471 1.18798 1.44088 0.79159 0.98315 0.89793 1.25117 0.94775 0.98733 0.97102 1.69963 1.33378 1.37321 1.09539 0.86180 0.79433 0.83023 0.77220 1.20877 1.21160 1.19564 1.07663 0.76485 0.74041 0.76620 1.93464 1.54273 1.70220 1.77786 1.93409 1.83330 1.47022 1.75041 1.30732 1.24432 1.08383 1.11948 1.21346 0.98852 0.99444 0.94804 1.21102 0.94697 0.99585 0.94370 1.21661 0.94919 1.00625 0.98418 1.21536 0.97571 1.00476 0.96102 1.21544 0.98356 0.99207 0.96616 1.21527 0.95605 1.00520 0.97980 1.21634 0.97474 1.00719 0.95772 0.95307 0.95183 0.90536 0.94238 0.95401 0.86015 0.90425 0.92593 0.86157 0.85489 0.90760 0.91008 0.90837 0.91558 0.91877 0.92222 0.92063 0.92091 0.92390 0.92225 0.92052 0.91846 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.35 -7.05 9.94 -35.23 -0.35 -7.40 16 3 C 0.05 0.94 6.28 37.15 0.23 1.18 16 4 C 0.11 2.59 5.70 -4.05 -0.02 2.57 16 5 N -0.84 -20.35 2.77 -59.92 -0.17 -20.52 16 6 C -0.27 -7.01 8.12 -15.06 -0.12 -7.13 16 7 H 0.08 2.13 7.94 -52.49 -0.42 1.71 16 8 C 0.05 1.31 4.96 -17.43 -0.09 1.22 16 9 N -0.86 -23.74 11.34 55.49 0.63 -23.11 16 10 Si 0.91 20.96 29.62 -169.99 -5.03 15.93 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 S 2.55 56.86 5.37 -107.50 -0.58 56.28 16 15 O -0.97 -25.11 17.34 -57.54 -1.00 -26.11 16 16 O -1.00 -23.69 16.41 -57.54 -0.94 -24.63 16 17 C -0.63 -10.39 5.93 37.16 0.22 -10.17 16 18 C -0.11 -1.52 4.69 -26.73 -0.13 -1.65 16 19 C -0.08 -0.93 2.19 -90.62 -0.20 -1.13 16 20 C -0.12 -1.32 4.96 -26.73 -0.13 -1.46 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 24 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.47 7.26 -51.93 -0.38 0.09 16 30 H 0.12 3.07 5.36 -51.93 -0.28 2.79 16 31 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.12 1.80 5.68 -51.93 -0.29 1.51 16 34 H 0.13 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.77 6.56 -51.93 -0.34 0.43 16 39 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -32.16 377.21 -9.87 -42.04 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.38 Total: 1.96 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 0.26 Total: -20.12 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.46 Total: -43.63 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -2.29 Total: -58.14 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.58 Total: 56.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.16 -9.87 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414462879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.547 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds