Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00356 * 2 1 4 4 C 1.52995 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47319 * 64.99965 * 4 3 2 6 6 C 1.36937 * 120.00390 * 275.00429 * 5 4 3 7 7 H 1.07996 * 120.00229 * 146.20874 * 6 5 4 8 8 C 1.38814 * 119.99510 * 326.20716 * 6 5 4 9 9 N 1.31619 * 120.00333 * 335.57600 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 155.58114 * 8 6 5 11 11 H 1.48501 * 109.47306 * 85.00470 * 10 8 6 12 12 H 1.48504 * 109.47092 * 205.00291 * 10 8 6 13 13 H 1.48497 * 109.47116 * 325.00526 * 10 8 6 14 14 S 1.65602 * 119.99727 * 94.99936 * 5 4 3 15 15 O 1.42104 * 104.27675 * 148.00594 * 14 5 4 16 16 O 1.42095 * 104.27597 * 20.14842 * 14 5 4 17 17 C 1.81403 * 104.45173 * 264.07471 * 14 5 4 18 18 C 1.52998 * 109.47275 * 180.02562 * 17 14 5 19 19 C 1.53000 * 109.47010 * 180.02562 * 18 17 14 20 20 C 1.52993 * 109.47052 * 64.99857 * 19 18 17 21 21 C 1.53000 * 109.47052 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47023 * 299.99849 * 21 20 19 23 23 C 1.52999 * 109.46863 * 59.99947 * 22 21 20 24 24 C 1.53000 * 109.47344 * 299.99857 * 23 22 21 25 25 H 1.09004 * 109.47379 * 299.99907 * 1 2 3 26 26 H 1.09003 * 109.47260 * 60.00018 * 1 2 3 27 27 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46680 * 60.00140 * 3 2 1 29 29 H 1.08998 * 109.46747 * 300.00659 * 3 2 1 30 30 H 1.09003 * 109.46915 * 304.99831 * 4 3 2 31 31 H 1.08998 * 109.47341 * 185.00598 * 4 3 2 32 32 H 0.97000 * 120.00036 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.46851 * 59.99977 * 17 14 5 34 34 H 1.09001 * 109.47011 * 299.99989 * 17 14 5 35 35 H 1.09002 * 109.46977 * 59.99820 * 18 17 14 36 36 H 1.09000 * 109.46780 * 300.00388 * 18 17 14 37 37 H 1.08998 * 109.47186 * 304.99673 * 19 18 17 38 38 H 1.08997 * 109.47532 * 300.00004 * 20 19 18 39 39 H 1.09008 * 109.47567 * 60.00328 * 20 19 18 40 40 H 1.09000 * 109.47264 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47186 * 59.99817 * 21 20 19 42 42 H 1.08997 * 109.47599 * 300.00223 * 22 21 20 43 43 H 1.08999 * 109.47523 * 179.97438 * 22 21 20 44 44 H 1.09001 * 109.46921 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47173 * 60.00104 * 23 22 21 46 46 H 1.08998 * 109.47186 * 300.00274 * 24 23 22 47 47 H 1.09000 * 109.47264 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9987 -0.7997 -1.3700 7 1 3.7803 -1.2637 -2.3205 8 6 4.3028 -1.5861 -0.2672 9 7 5.0151 -1.0871 0.7207 10 14 3.7011 -3.3527 -0.1854 11 1 4.6581 -4.2352 -0.9000 12 1 3.6021 -3.7767 1.2344 13 1 2.3647 -3.4506 -0.8256 14 16 4.4453 1.5130 -2.5262 15 8 5.4456 0.7470 -3.1836 16 8 4.7543 2.7671 -1.9337 17 6 2.9624 1.6466 -3.5623 18 6 3.2720 2.5095 -4.7872 19 6 2.0210 2.6227 -5.6607 20 6 0.9325 3.3794 -4.8971 21 6 -0.3187 3.4920 -5.7704 22 6 0.0227 4.2489 -7.0556 23 6 1.1113 3.4921 -7.8192 24 6 2.3625 3.3795 -6.9459 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1764 0.0890 32 1 5.2278 -1.6367 1.4911 33 1 2.1579 2.1058 -2.9878 34 1 2.6553 0.6524 -3.8870 35 1 4.0764 2.0499 -5.3615 36 1 3.5794 3.5037 -4.4628 37 1 1.6617 1.6247 -5.9118 38 1 0.6889 2.8401 -3.9818 39 1 1.2917 4.3775 -4.6460 40 1 -1.0941 4.0315 -5.2266 41 1 -0.6778 2.4938 -6.0211 42 1 0.3819 5.2470 -6.8049 43 1 -0.8685 4.3287 -7.6780 44 1 1.3542 4.0310 -8.7349 45 1 0.7522 2.4939 -8.0699 46 1 2.7216 4.3776 -6.6952 47 1 3.1379 2.8400 -7.4897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414462879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -157.439970 kcal Electronic energy + Delta-G solvation = -26854.680925 eV Core-core repulsion = 23163.233474 eV Total energy + Delta-G solvation = -3691.447451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.75159 -38.86492 -37.80676 -36.91830 -36.58930 -35.07571 -33.27017 -31.64505 -30.37310 -30.21383 -27.15757 -25.97152 -25.23291 -23.41711 -23.12974 -21.75174 -20.63917 -20.14557 -18.99632 -18.26231 -17.42571 -16.95133 -16.80844 -16.52709 -16.14140 -16.09783 -15.81061 -15.51093 -15.01745 -14.97828 -14.91246 -14.56207 -13.87352 -13.66010 -13.49857 -13.37841 -13.20141 -13.01864 -12.98112 -12.91753 -12.77896 -12.68543 -12.54720 -12.35155 -12.29250 -12.15830 -11.97440 -11.82925 -11.76947 -11.62584 -11.54817 -11.29007 -10.97728 -10.82815 -10.65818 -10.31537 -9.46199 -8.04996 -5.73957 -0.36458 1.51261 1.53599 1.64323 2.20009 2.64006 3.07479 3.20796 3.32909 3.45178 3.62436 3.72987 3.82394 3.98074 4.08505 4.27781 4.37681 4.39644 4.42393 4.45271 4.55297 4.60978 4.66069 4.66490 4.67560 4.72973 4.74925 4.78757 4.79825 4.82696 4.94310 4.97083 5.08967 5.20254 5.28933 5.31771 5.34063 5.37912 5.41751 5.49793 5.58147 5.62518 5.97873 6.57479 6.65305 7.26486 7.58627 8.98915 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004266 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.240874 B = 6562.022457 C = 7114.460057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.388 6.388 3 C 0.057 3.943 4 C 0.106 3.894 5 N -0.854 5.854 6 C -0.285 4.285 7 H 0.085 0.915 8 C 0.006 3.994 9 N -0.900 5.900 10 Si 0.966 3.034 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.260 1.260 14 S 2.551 3.449 15 O -1.013 7.013 16 O -1.018 7.018 17 C -0.592 4.592 18 C -0.114 4.114 19 C -0.074 4.074 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.120 4.120 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.262 0.738 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 8.619 -10.971 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C -0.022 4.022 4 C -0.021 4.021 5 N -0.684 5.684 6 C -0.419 4.419 7 H 0.102 0.898 8 C -0.197 4.197 9 N -0.541 5.541 10 Si 0.792 3.208 11 H -0.210 1.210 12 H -0.212 1.212 13 H -0.184 1.184 14 S 2.657 3.343 15 O -1.003 7.003 16 O -1.009 7.009 17 C -0.724 4.724 18 C -0.153 4.153 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.157 4.157 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.474 8.847 -10.969 19.497 hybrid contribution -0.504 -0.871 0.427 1.093 sum -13.979 7.976 -10.543 19.240 Atomic orbital electron populations 1.22880 0.81450 1.02822 1.00369 1.88186 1.19558 1.27693 1.95231 1.23040 0.94315 0.84883 0.99969 1.21423 0.91961 0.97797 0.90914 1.52557 1.77979 1.13506 1.24369 1.18952 1.44317 0.80267 0.98328 0.89774 1.25792 0.94960 1.02004 0.96933 1.70081 1.35157 1.38627 1.10275 0.85382 0.79272 0.79189 0.76999 1.21025 1.21247 1.18394 1.06947 0.77915 0.72964 0.76495 1.93416 1.57712 1.71048 1.78157 1.93384 1.84695 1.46776 1.76012 1.30370 1.20270 1.10222 1.11557 1.21530 1.00501 0.99088 0.94152 1.21082 0.93402 1.00230 0.94606 1.21703 0.95401 1.00419 0.98477 1.21526 0.96900 1.00825 0.96261 1.21554 0.98745 0.99013 0.96370 1.21523 0.94932 1.00863 0.98139 1.21649 0.98342 1.00537 0.95215 0.93463 0.93341 0.89902 0.91812 0.93266 0.88875 0.90725 0.92893 0.83713 0.84181 0.90912 0.90542 0.90658 0.91975 0.91815 0.91388 0.92005 0.92003 0.91193 0.91138 0.91965 0.91679 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.39 -15.01 9.94 -148.98 -1.48 -16.49 16 3 C 0.06 2.04 6.28 71.98 0.45 2.49 16 4 C 0.11 4.87 5.70 86.38 0.49 5.36 16 5 N -0.85 -41.78 2.77 -343.48 -0.95 -42.74 16 6 C -0.28 -15.09 8.12 84.03 0.68 -14.41 16 7 H 0.08 4.32 7.94 -2.91 -0.02 4.29 16 8 C 0.01 0.32 4.96 84.86 0.42 0.74 16 9 N -0.90 -51.40 11.34 21.65 0.25 -51.15 16 10 Si 0.97 43.50 29.62 68.60 2.03 45.53 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 S 2.55 113.77 5.37 -56.49 -0.30 113.47 16 15 O -1.01 -53.64 17.34 -127.65 -2.21 -55.86 16 16 O -1.02 -48.53 16.41 -127.65 -2.09 -50.63 16 17 C -0.59 -18.25 5.93 71.98 0.43 -17.82 16 18 C -0.11 -3.03 4.69 30.59 0.14 -2.88 16 19 C -0.07 -1.54 2.19 -10.80 -0.02 -1.56 16 20 C -0.12 -2.34 4.96 30.59 0.15 -2.18 16 21 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 22 C -0.12 -1.68 5.92 30.60 0.18 -1.49 16 23 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 24 C -0.12 -2.15 5.21 30.60 0.16 -1.99 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.52 7.26 -2.39 -0.02 1.51 16 30 H 0.09 4.87 5.36 -2.39 -0.01 4.86 16 31 H 0.07 3.33 6.75 -2.39 -0.02 3.32 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.14 3.85 5.68 -2.39 -0.01 3.83 16 34 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.22 6.56 -2.39 -0.02 1.21 16 39 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.24 377.21 0.85 -70.39 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.92 Total: 22.62 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.70 Total: -35.14 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -0.71 Total: -93.89 kcal Atomic # 8 Polarization: -117.18 SS G_CDS: -5.79 Total: -122.97 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 113.77 SS G_CDS: -0.30 Total: 113.47 kcal Total: -71.24 0.85 -70.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414462879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.054 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds