Wall clock time and date at job start Tue Mar 31 2020 12:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99572 * 2 1 4 4 O 1.20818 * 120.00442 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99808 * 180.02562 * 3 2 1 6 6 N 1.46901 * 109.54206 * 324.76535 * 5 3 2 7 7 C 1.46901 * 110.99710 * 297.86093 * 6 5 3 8 8 C 1.50702 * 109.46979 * 174.60228 * 7 6 5 9 9 C 1.38638 * 119.75359 * 89.99981 * 8 7 6 10 10 C 1.37614 * 120.24976 * 179.97438 * 9 8 7 11 11 C 1.40718 * 119.74363 * 0.02562 * 10 9 8 12 12 C 1.41396 * 120.24103 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00404 * 334.66060 * 12 11 10 14 14 C 1.39943 * 120.00164 * 154.65544 * 12 11 10 15 15 N 1.30831 * 119.99719 * 341.98056 * 14 12 11 16 16 Si 1.86798 * 120.00348 * 161.96963 * 14 12 11 17 17 H 1.48500 * 109.46914 * 94.98718 * 16 14 12 18 18 H 1.48495 * 109.47338 * 214.98375 * 16 14 12 19 19 H 1.48503 * 109.47269 * 334.98872 * 16 14 12 20 20 C 1.40710 * 119.51189 * 0.25260 * 11 10 9 21 21 C 1.37620 * 119.74692 * 359.46620 * 20 11 10 22 22 C 1.53179 * 109.61752 * 84.98354 * 5 3 2 23 23 C 1.53093 * 109.16285 * 176.89235 * 22 5 3 24 24 O 1.42903 * 109.41253 * 302.39169 * 23 22 5 25 25 C 1.42907 * 114.09883 * 61.16179 * 24 23 22 26 26 C 1.53093 * 109.41218 * 298.83854 * 25 24 23 27 27 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47002 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47402 * 60.00339 * 1 2 3 30 30 H 1.00899 * 111.00344 * 61.81446 * 6 5 3 31 31 H 1.08999 * 109.47260 * 54.60073 * 7 6 5 32 32 H 1.09006 * 109.47374 * 294.59701 * 7 6 5 33 33 H 1.08004 * 119.87031 * 359.97438 * 9 8 7 34 34 H 1.07996 * 120.12698 * 179.97438 * 10 9 8 35 35 H 0.97003 * 119.99961 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.12289 * 179.72501 * 20 11 10 37 37 H 1.07995 * 119.87588 * 180.27277 * 21 20 11 38 38 H 1.08998 * 109.52328 * 296.80098 * 22 5 3 39 39 H 1.09001 * 109.51935 * 56.98961 * 22 5 3 40 40 H 1.08998 * 109.47755 * 182.41400 * 23 22 5 41 41 H 1.09000 * 109.48889 * 62.38070 * 23 22 5 42 42 H 1.08999 * 109.48227 * 178.85885 * 25 24 23 43 43 H 1.09000 * 109.49042 * 58.82375 * 25 24 23 44 44 H 1.09000 * 109.52111 * 297.70461 * 26 25 24 45 45 H 1.09004 * 109.52262 * 177.51463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1165 0.1713 0.7977 7 6 3.6835 0.2677 2.1981 8 6 4.1554 -0.9473 2.9545 9 6 5.3940 -0.9321 3.5770 10 6 5.8348 -2.0357 4.2709 11 6 5.0232 -3.1828 4.3467 12 6 5.4659 -4.3228 5.0564 13 1 6.5231 -4.4999 5.1884 14 6 4.5342 -5.2216 5.5879 15 7 3.2885 -4.8548 5.7467 16 14 5.0691 -6.9451 6.0702 17 1 5.3944 -6.9752 7.5189 18 1 3.9683 -7.9017 5.7902 19 1 6.2699 -7.3287 5.2852 20 6 3.7704 -3.1890 3.7060 21 6 3.3474 -2.0719 3.0226 22 6 4.0859 1.1762 -1.4382 23 6 5.6085 1.3353 -1.4342 24 8 5.9539 2.5856 -0.8347 25 6 5.5350 2.7161 0.5254 26 6 4.0095 2.6125 0.6001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8645 -0.7220 0.4019 31 1 2.5956 0.3214 2.2392 32 1 4.1089 1.1643 2.6491 33 1 6.0154 -0.0507 3.5171 34 1 6.8002 -2.0218 4.7548 35 1 2.6427 -5.4777 6.1154 36 1 3.1414 -4.0656 3.7541 37 1 2.3844 -2.0728 2.5338 38 1 3.8223 0.2041 -1.8548 39 1 3.6388 1.9658 -2.0421 40 1 5.9794 1.3087 -2.4588 41 1 6.0576 0.5222 -0.8638 42 1 5.8530 3.6842 0.9124 43 1 5.9830 1.9212 1.1217 44 1 3.5608 3.4310 0.0373 45 1 3.6912 2.6675 1.6412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425497668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:28 Heat of formation + Delta-G solvation = -115.362268 kcal Electronic energy + Delta-G solvation = -27530.028659 eV Core-core repulsion = 23704.961882 eV Total energy + Delta-G solvation = -3825.066776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13625 -39.13982 -37.73558 -36.57517 -35.86405 -33.84503 -31.98411 -31.16674 -29.55677 -29.26281 -28.13031 -26.44085 -25.08946 -24.00508 -22.94019 -21.78029 -21.02797 -19.92143 -19.33972 -17.79475 -17.32052 -17.15437 -16.61234 -16.09811 -15.81306 -15.44320 -15.12994 -14.82928 -14.41456 -14.22305 -13.91228 -13.59393 -13.44714 -13.12431 -12.86817 -12.60420 -12.53169 -12.29026 -12.16861 -11.99111 -11.96573 -11.55149 -11.39367 -11.11181 -11.09463 -10.97005 -10.87859 -10.69280 -10.56367 -10.41564 -10.24695 -9.66951 -9.57638 -9.42084 -9.16094 -8.38483 -7.48757 -7.34338 -6.80863 -4.38922 2.07766 2.55283 2.71319 3.03939 3.05595 3.07988 3.14961 3.88857 3.90146 4.22521 4.40511 4.55039 4.64920 4.70267 4.92732 5.00146 5.07747 5.24938 5.32804 5.42452 5.43541 5.52206 5.62683 5.66062 5.68603 5.73606 5.78501 5.88842 5.93756 6.07873 6.25846 6.29383 6.34116 6.37035 6.90993 7.00982 7.04818 7.20218 7.21688 7.33100 7.48356 7.58619 7.65160 7.83802 8.02102 8.08699 8.26791 8.60360 8.85996 8.93885 10.14279 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003330 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.888628 B = 8407.396998 C = 9391.444237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.437 3.563 4 O -0.511 6.511 5 C 0.128 3.872 6 N -0.657 5.657 7 C 0.121 3.879 8 C -0.218 4.218 9 C -0.066 4.066 10 C -0.228 4.228 11 C 0.115 3.885 12 C -0.463 4.463 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.792 5.792 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.166 4.166 21 C -0.090 4.090 22 C -0.139 4.139 23 C 0.072 3.928 24 O -0.385 6.385 25 C 0.071 3.929 26 C -0.135 4.135 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.355 0.645 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.280 0.720 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 8.439 -11.360 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.277 3.723 4 O -0.398 6.398 5 C 0.034 3.966 6 N -0.290 5.290 7 C -0.006 4.006 8 C -0.219 4.219 9 C -0.085 4.085 10 C -0.248 4.248 11 C 0.113 3.887 12 C -0.493 4.493 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.418 5.418 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.185 4.185 21 C -0.109 4.109 22 C -0.177 4.177 23 C -0.005 4.005 24 O -0.304 6.304 25 C -0.006 4.006 26 C -0.173 4.173 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.576 9.106 -11.246 14.556 hybrid contribution -1.528 -1.283 0.467 2.049 sum -3.104 7.822 -10.779 13.675 Atomic orbital electron populations 1.23257 0.76533 1.03831 1.02221 1.86554 1.23373 1.33474 1.83609 1.25426 0.93618 0.81464 0.71760 1.90617 1.67444 1.36518 1.45202 1.21166 0.82958 0.95804 0.96682 1.60888 1.60673 1.04672 1.02791 1.20683 0.95950 0.97762 0.86236 1.18771 0.97777 0.95798 1.09583 1.20319 0.94479 0.96773 0.96942 1.20975 1.01396 0.94412 1.08008 1.17625 0.91222 0.91203 0.88665 1.19612 0.94318 1.05197 1.30136 0.90424 1.25908 0.94414 1.00151 0.93604 1.69835 1.03728 1.35883 1.32313 0.86341 0.79666 0.81564 0.79428 1.19585 1.20047 1.18371 1.21226 0.98781 0.97842 1.00684 1.20516 0.97171 0.93859 0.99334 1.22228 0.98922 1.03526 0.93074 1.22460 0.92230 0.87187 0.98611 1.87874 1.79350 1.36633 1.26533 1.22498 0.92050 1.02484 0.83561 1.22195 0.98347 0.94381 1.02341 0.87946 0.91965 0.92164 0.82411 0.96092 0.91508 0.89446 0.89069 0.90898 0.86806 0.89833 0.89882 0.90417 0.89026 0.90969 0.89019 0.91055 0.89877 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.35 -4.91 9.57 -39.25 -0.38 -5.28 16 3 C 0.44 6.33 5.48 36.01 0.20 6.52 16 4 O -0.51 -8.39 15.78 -18.74 -0.30 -8.69 16 5 C 0.13 1.65 0.53 -132.57 -0.07 1.58 16 6 N -0.66 -9.37 4.80 -102.20 -0.49 -9.86 16 7 C 0.12 2.00 5.00 -4.97 -0.02 1.98 16 8 C -0.22 -4.44 5.36 -104.33 -0.56 -4.99 16 9 C -0.07 -1.41 9.67 -39.66 -0.38 -1.80 16 10 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 11 C 0.12 2.99 5.56 -106.83 -0.59 2.40 16 12 C -0.46 -12.06 9.05 -37.74 -0.34 -12.40 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 14 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 15 N -0.79 -20.13 11.05 55.55 0.61 -19.52 16 16 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.17 -4.17 8.69 -38.87 -0.34 -4.50 16 21 C -0.09 -1.99 9.67 -39.66 -0.38 -2.38 16 22 C -0.14 -1.52 5.06 -26.59 -0.13 -1.66 16 23 C 0.07 0.78 6.68 37.21 0.25 1.02 16 24 O -0.39 -4.83 10.77 -35.23 -0.38 -5.21 16 25 C 0.07 0.83 6.68 37.21 0.25 1.08 16 26 C -0.13 -1.69 4.17 -26.59 -0.11 -1.80 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.36 5.25 8.26 -39.29 -0.32 4.93 16 31 H 0.02 0.36 6.65 -51.93 -0.35 0.02 16 32 H 0.07 1.06 6.46 -51.93 -0.34 0.73 16 33 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 36 H 0.11 2.97 6.26 -52.49 -0.33 2.65 16 37 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 44 H 0.08 1.06 7.77 -51.93 -0.40 0.66 16 45 H 0.08 1.05 6.34 -51.93 -0.33 0.72 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -28.28 364.54 -8.76 -37.04 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.65 Total: 10.24 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.65 Total: -17.48 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.12 Total: -29.38 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.05 Total: -19.18 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.28 -8.76 -37.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425497668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.320 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds