Wall clock time and date at job start Tue Mar 31 2020 12:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99572 * 2 1 4 4 O 1.20818 * 120.00442 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99808 * 180.02562 * 3 2 1 6 6 N 1.46901 * 109.54206 * 324.76535 * 5 3 2 7 7 C 1.46901 * 110.99710 * 297.86093 * 6 5 3 8 8 C 1.50702 * 109.46979 * 174.60228 * 7 6 5 9 9 C 1.38638 * 119.75359 * 89.99981 * 8 7 6 10 10 C 1.37614 * 120.24976 * 179.97438 * 9 8 7 11 11 C 1.40718 * 119.74363 * 0.02562 * 10 9 8 12 12 C 1.41396 * 120.24103 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00404 * 334.66060 * 12 11 10 14 14 C 1.39943 * 120.00164 * 154.65544 * 12 11 10 15 15 N 1.30831 * 119.99719 * 341.98056 * 14 12 11 16 16 Si 1.86798 * 120.00348 * 161.96963 * 14 12 11 17 17 H 1.48500 * 109.46914 * 94.98718 * 16 14 12 18 18 H 1.48495 * 109.47338 * 214.98375 * 16 14 12 19 19 H 1.48503 * 109.47269 * 334.98872 * 16 14 12 20 20 C 1.40710 * 119.51189 * 0.25260 * 11 10 9 21 21 C 1.37620 * 119.74692 * 359.46620 * 20 11 10 22 22 C 1.53179 * 109.61752 * 84.98354 * 5 3 2 23 23 C 1.53093 * 109.16285 * 176.89235 * 22 5 3 24 24 O 1.42903 * 109.41253 * 302.39169 * 23 22 5 25 25 C 1.42907 * 114.09883 * 61.16179 * 24 23 22 26 26 C 1.53093 * 109.41218 * 298.83854 * 25 24 23 27 27 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47002 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47402 * 60.00339 * 1 2 3 30 30 H 1.00899 * 111.00344 * 61.81446 * 6 5 3 31 31 H 1.08999 * 109.47260 * 54.60073 * 7 6 5 32 32 H 1.09006 * 109.47374 * 294.59701 * 7 6 5 33 33 H 1.08004 * 119.87031 * 359.97438 * 9 8 7 34 34 H 1.07996 * 120.12698 * 179.97438 * 10 9 8 35 35 H 0.97003 * 119.99961 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.12289 * 179.72501 * 20 11 10 37 37 H 1.07995 * 119.87588 * 180.27277 * 21 20 11 38 38 H 1.08998 * 109.52328 * 296.80098 * 22 5 3 39 39 H 1.09001 * 109.51935 * 56.98961 * 22 5 3 40 40 H 1.08998 * 109.47755 * 182.41400 * 23 22 5 41 41 H 1.09000 * 109.48889 * 62.38070 * 23 22 5 42 42 H 1.08999 * 109.48227 * 178.85885 * 25 24 23 43 43 H 1.09000 * 109.49042 * 58.82375 * 25 24 23 44 44 H 1.09000 * 109.52111 * 297.70461 * 26 25 24 45 45 H 1.09004 * 109.52262 * 177.51463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1165 0.1713 0.7977 7 6 3.6835 0.2677 2.1981 8 6 4.1554 -0.9473 2.9545 9 6 5.3940 -0.9321 3.5770 10 6 5.8348 -2.0357 4.2709 11 6 5.0232 -3.1828 4.3467 12 6 5.4659 -4.3228 5.0564 13 1 6.5231 -4.4999 5.1884 14 6 4.5342 -5.2216 5.5879 15 7 3.2885 -4.8548 5.7467 16 14 5.0691 -6.9451 6.0702 17 1 5.3944 -6.9752 7.5189 18 1 3.9683 -7.9017 5.7902 19 1 6.2699 -7.3287 5.2852 20 6 3.7704 -3.1890 3.7060 21 6 3.3474 -2.0719 3.0226 22 6 4.0859 1.1762 -1.4382 23 6 5.6085 1.3353 -1.4342 24 8 5.9539 2.5856 -0.8347 25 6 5.5350 2.7161 0.5254 26 6 4.0095 2.6125 0.6001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.8645 -0.7220 0.4019 31 1 2.5956 0.3214 2.2392 32 1 4.1089 1.1643 2.6491 33 1 6.0154 -0.0507 3.5171 34 1 6.8002 -2.0218 4.7548 35 1 2.6427 -5.4777 6.1154 36 1 3.1414 -4.0656 3.7541 37 1 2.3844 -2.0728 2.5338 38 1 3.8223 0.2041 -1.8548 39 1 3.6388 1.9658 -2.0421 40 1 5.9794 1.3087 -2.4588 41 1 6.0576 0.5222 -0.8638 42 1 5.8530 3.6842 0.9124 43 1 5.9830 1.9212 1.1217 44 1 3.5608 3.4310 0.0373 45 1 3.6912 2.6675 1.6412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425497668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:27 Heat of formation + Delta-G solvation = -131.139316 kcal Electronic energy + Delta-G solvation = -27530.712803 eV Core-core repulsion = 23704.961882 eV Total energy + Delta-G solvation = -3825.750921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22452 -40.16547 -39.43740 -37.67294 -37.10833 -35.55716 -33.33985 -32.14157 -31.20196 -30.95992 -29.12251 -27.94021 -26.25465 -25.14960 -24.28046 -22.84992 -22.78686 -21.62884 -20.37515 -19.18963 -18.87769 -18.22628 -17.71510 -17.31633 -16.95809 -16.73939 -16.40833 -15.87862 -15.77931 -15.54592 -15.44031 -15.11627 -14.58438 -14.34018 -14.11620 -13.91088 -13.77844 -13.69964 -13.40888 -13.36940 -13.12328 -13.06611 -12.75909 -12.64839 -12.47650 -12.29327 -12.12233 -12.00144 -11.89528 -11.64646 -11.37120 -11.26615 -11.19362 -10.97796 -10.57620 -9.61321 -9.30697 -9.16877 -8.63186 -6.31491 0.91800 0.99230 1.19560 1.38968 1.47739 1.53970 1.59161 2.21763 2.68698 3.01284 3.17366 3.40445 3.56026 3.73135 3.81060 4.02648 4.16708 4.20726 4.21702 4.28522 4.36902 4.41931 4.53417 4.57995 4.59035 4.62469 4.65871 4.72990 4.78367 4.84594 5.01789 5.05648 5.08690 5.18246 5.19899 5.25259 5.39540 5.49273 5.73924 5.75596 6.01994 6.13212 6.19638 6.31562 6.33504 6.42937 6.55412 6.73303 6.97087 7.06710 8.34369 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003330 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.888628 B = 8407.396998 C = 9391.444237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.437 3.563 4 O -0.534 6.534 5 C 0.129 3.871 6 N -0.648 5.648 7 C 0.131 3.869 8 C -0.200 4.200 9 C -0.066 4.066 10 C -0.243 4.243 11 C 0.083 3.917 12 C -0.503 4.503 13 H 0.074 0.926 14 C 0.038 3.962 15 N -0.827 5.827 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.189 4.189 21 C -0.092 4.092 22 C -0.135 4.135 23 C 0.071 3.929 24 O -0.396 6.396 25 C 0.074 3.926 26 C -0.133 4.133 27 H 0.125 0.875 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.354 0.646 31 H 0.016 0.984 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.287 0.713 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 9.051 -12.517 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.278 3.722 4 O -0.422 6.422 5 C 0.035 3.965 6 N -0.281 5.281 7 C 0.003 3.997 8 C -0.201 4.201 9 C -0.085 4.085 10 C -0.263 4.263 11 C 0.081 3.919 12 C -0.533 4.533 13 H 0.092 0.908 14 C -0.177 4.177 15 N -0.453 5.453 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.208 4.208 21 C -0.110 4.110 22 C -0.173 4.173 23 C -0.005 4.005 24 O -0.315 6.315 25 C -0.003 4.003 26 C -0.171 4.171 27 H 0.144 0.856 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.175 0.825 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.330 9.725 -12.414 15.826 hybrid contribution -1.668 -1.322 0.729 2.250 sum -2.998 8.403 -11.685 14.702 Atomic orbital electron populations 1.23506 0.75097 1.05483 1.02396 1.86542 1.24903 1.33177 1.83280 1.25687 0.94112 0.81302 0.71079 1.90608 1.68018 1.37213 1.46402 1.21287 0.82155 0.95300 0.97754 1.60795 1.60465 1.05170 1.01686 1.20535 0.95597 0.96226 0.87315 1.19126 0.96790 0.96204 1.08024 1.20627 0.95045 0.96916 0.95873 1.21177 1.01563 0.94795 1.08741 1.17952 0.92157 0.92226 0.89584 1.19846 0.94558 1.06854 1.32040 0.90823 1.26705 0.94216 1.03722 0.93063 1.69885 1.04794 1.37363 1.33225 0.85255 0.79284 0.76395 0.79170 1.18847 1.19086 1.18252 1.21174 0.98858 0.98436 1.02337 1.20713 0.98029 0.93588 0.98714 1.22245 0.99011 1.04447 0.91579 1.22578 0.91944 0.86346 0.99666 1.87870 1.79478 1.37408 1.26760 1.22520 0.91242 1.03170 0.83360 1.22192 0.98953 0.93980 1.01943 0.85639 0.92588 0.91238 0.82533 0.96600 0.90181 0.86506 0.88730 0.90259 0.88717 0.88269 0.88641 0.89973 0.86753 0.91736 0.87304 0.91919 0.90052 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -9.45 9.57 -51.39 -0.49 -9.94 16 3 C 0.44 11.91 5.48 71.24 0.39 12.30 16 4 O -0.53 -16.82 15.78 21.99 0.35 -16.47 16 5 C 0.13 3.06 0.53 2.90 0.00 3.06 16 6 N -0.65 -17.12 4.80 -477.26 -2.29 -19.41 16 7 C 0.13 4.08 5.00 85.56 0.43 4.50 16 8 C -0.20 -7.88 5.36 -19.67 -0.11 -7.98 16 9 C -0.07 -2.73 9.67 22.22 0.21 -2.51 16 10 C -0.24 -11.67 9.80 22.73 0.22 -11.45 16 11 C 0.08 4.44 5.56 -21.29 -0.12 4.32 16 12 C -0.50 -27.12 9.05 23.46 0.21 -26.91 16 13 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 14 C 0.04 1.89 5.13 85.26 0.44 2.33 16 15 N -0.83 -43.17 11.05 21.83 0.24 -42.93 16 16 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 C -0.19 -9.72 8.69 22.73 0.20 -9.52 16 21 C -0.09 -4.04 9.67 22.22 0.21 -3.83 16 22 C -0.13 -2.61 5.06 30.69 0.16 -2.45 16 23 C 0.07 1.35 6.68 72.01 0.48 1.83 16 24 O -0.40 -8.95 10.77 -148.98 -1.60 -10.55 16 25 C 0.07 1.56 6.68 72.01 0.48 2.04 16 26 C -0.13 -3.05 4.17 30.68 0.13 -2.92 16 27 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.07 1.28 8.13 -2.39 -0.02 1.27 16 30 H 0.35 9.74 8.26 -89.69 -0.74 9.00 16 31 H 0.02 0.52 6.65 -2.39 -0.02 0.51 16 32 H 0.08 2.33 6.46 -2.38 -0.02 2.32 16 33 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 36 H 0.09 5.17 6.26 -2.91 -0.02 5.15 16 37 H 0.10 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.44 7.75 -2.39 -0.02 1.43 16 44 H 0.08 1.92 7.77 -2.39 -0.02 1.90 16 45 H 0.08 1.82 6.34 -2.38 -0.02 1.80 16 Total: -1.00 -61.76 364.54 3.03 -58.72 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.26 Total: 35.93 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.54 Total: -35.41 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -2.05 Total: -62.34 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.75 Total: -36.96 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -61.76 3.03 -58.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425497668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.416 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds