Wall clock time and date at job start Tue Mar 31 2020 12:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99941 * 2 1 4 4 N 1.46897 * 109.47092 * 124.16235 * 3 2 1 5 5 C 1.46901 * 111.00269 * 301.33233 * 4 3 2 6 6 C 1.50695 * 109.47061 * 289.39516 * 5 4 3 7 7 H 1.07996 * 120.00115 * 355.37070 * 6 5 4 8 8 C 1.37882 * 120.00316 * 175.37054 * 6 5 4 9 9 N 1.31514 * 119.99444 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00309 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47189 * 60.00050 * 10 8 6 12 12 H 1.48503 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47145 * 300.00017 * 10 8 6 14 14 C 1.46901 * 110.99989 * 65.28782 * 4 3 2 15 15 C 1.50697 * 109.47485 * 66.04271 * 14 4 3 16 16 C 1.38259 * 119.94794 * 270.30275 * 15 14 4 17 17 C 1.38139 * 120.05774 * 180.29509 * 16 15 14 18 18 C 1.38728 * 119.94426 * 359.42703 * 17 16 15 19 19 O 1.35903 * 120.05813 * 180.29770 * 18 17 16 20 20 C 1.42906 * 116.99827 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.46740 * 179.97438 * 20 19 18 22 22 O 1.20829 * 120.00521 * 359.97438 * 21 20 19 23 23 O 1.34234 * 120.00124 * 180.02562 * 21 20 19 24 24 C 1.45193 * 117.00344 * 179.97438 * 23 21 20 25 25 C 1.38733 * 119.88737 * 0.27425 * 18 17 16 26 26 C 1.38148 * 119.94592 * 359.97438 * 25 18 17 27 27 H 1.07998 * 119.99752 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99968 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00088 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47297 * 4.16116 * 3 2 1 31 31 H 1.09004 * 109.47062 * 244.16169 * 3 2 1 32 32 H 1.09002 * 109.47006 * 49.39350 * 5 4 3 33 33 H 1.08999 * 109.47509 * 169.39564 * 5 4 3 34 34 H 0.97006 * 120.00046 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.46987 * 306.04086 * 14 4 3 36 36 H 1.09002 * 109.47093 * 186.04891 * 14 4 3 37 37 H 1.08001 * 119.97206 * 0.02562 * 16 15 14 38 38 H 1.08005 * 120.03027 * 179.69720 * 17 16 15 39 39 H 1.08992 * 109.47225 * 299.99977 * 20 19 18 40 40 H 1.09003 * 109.46855 * 60.00355 * 20 19 18 41 41 H 1.09004 * 109.47162 * 179.97438 * 24 23 21 42 42 H 1.08999 * 109.47098 * 300.00024 * 24 23 21 43 43 H 1.08999 * 109.46823 * 59.99993 * 24 23 21 44 44 H 1.08004 * 120.02698 * 180.02562 * 25 18 17 45 45 H 1.07996 * 119.97319 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2510 1.1885 2.4112 6 6 1.4497 2.4359 2.6812 7 1 1.5378 3.2874 2.0227 8 6 0.6040 2.4902 3.7688 9 7 0.4971 1.4535 4.5710 10 14 -0.3887 4.0366 4.1039 11 1 -1.2752 4.3163 2.9459 12 1 -1.2132 3.8410 5.3234 13 1 0.5337 5.1822 4.3091 14 6 4.0264 0.3157 1.0152 15 6 4.9085 0.6449 -0.1614 16 6 4.5924 0.1615 -1.4176 17 6 5.4028 0.4568 -2.4966 18 6 6.5282 1.2489 -2.3212 19 8 7.3237 1.5458 -3.3823 20 6 8.4652 2.3670 -3.1276 21 6 9.2219 2.5875 -4.4120 22 8 8.8249 2.0919 -5.4400 23 8 10.3378 3.3336 -4.4140 24 6 11.0153 3.5030 -5.6869 25 6 6.8398 1.7378 -1.0609 26 6 6.0290 1.4354 0.0160 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3576 2.1322 0.0746 31 1 2.6331 1.3958 -0.9250 32 1 1.5792 0.3329 2.3423 33 1 2.9600 1.0293 3.2236 34 1 -0.0981 1.4915 5.3360 35 1 3.5624 -0.6585 0.8602 36 1 4.6273 0.2913 1.9243 37 1 3.7135 -0.4510 -1.5546 38 1 5.1581 0.0750 -3.4769 39 1 8.1400 3.3273 -2.7276 40 1 9.1140 1.8729 -2.4043 41 1 11.8991 4.1258 -5.5481 42 1 11.3143 2.5281 -6.0720 43 1 10.3410 3.9826 -6.3964 44 1 7.7152 2.3550 -0.9218 45 1 6.2710 1.8160 0.9972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430100774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:35 Heat of formation + Delta-G solvation = -61.361872 kcal Electronic energy + Delta-G solvation = -25846.184760 eV Core-core repulsion = 22023.459617 eV Total energy + Delta-G solvation = -3822.725144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02635 -40.07328 -38.32284 -36.94076 -36.44315 -32.79360 -32.43597 -31.16752 -30.61352 -29.67642 -27.50810 -26.94830 -25.87972 -23.72465 -22.95742 -21.64854 -21.04885 -20.73772 -18.79969 -18.66648 -17.64226 -17.31314 -17.22625 -16.25441 -15.79901 -15.66921 -15.27250 -15.03128 -14.70413 -14.32707 -14.06068 -13.95134 -13.72746 -13.66362 -13.33105 -12.99934 -12.74317 -12.53592 -12.44390 -12.13194 -11.42109 -11.40446 -11.29581 -11.28089 -11.01519 -10.95951 -10.86402 -10.72028 -10.62530 -10.54951 -10.40392 -9.90675 -9.24378 -8.91166 -8.67359 -8.39076 -8.05564 -7.20974 -5.99380 -4.00029 1.42548 1.51043 1.71431 1.75310 2.92164 3.29276 3.34433 3.38577 3.41531 3.83462 4.21636 4.45443 4.55043 4.58295 4.65867 4.75001 4.88803 4.91664 5.07231 5.10307 5.28869 5.36165 5.40524 5.50527 5.56965 5.65773 5.75149 5.83958 5.93441 6.09560 6.18260 6.25046 6.32834 6.44002 6.46092 6.69711 6.76507 6.88419 7.18469 7.23013 7.27145 7.31553 7.37096 7.46409 7.83698 8.10605 8.21355 8.56804 9.07429 9.63512 11.11033 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.002313 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.126989 B =12101.728333 C =12714.927116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 C 0.087 3.913 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.088 3.912 15 C -0.090 4.090 16 C -0.075 4.075 17 C -0.146 4.146 18 C 0.113 3.887 19 O -0.299 6.299 20 C 0.070 3.930 21 C 0.463 3.537 22 O -0.484 6.484 23 O -0.356 6.356 24 C 0.037 3.963 25 C -0.209 4.209 26 C -0.059 4.059 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.730 0.069 -15.871 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.201 4.201 3 C -0.041 4.041 4 N -0.246 5.246 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.040 4.040 15 C -0.091 4.091 16 C -0.094 4.094 17 C -0.164 4.164 18 C 0.069 3.931 19 O -0.213 6.213 20 C -0.006 4.006 21 C 0.304 3.696 22 O -0.369 6.369 23 O -0.274 6.274 24 C -0.056 4.056 25 C -0.227 4.227 26 C -0.078 4.078 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.758 0.283 -16.212 24.047 hybrid contribution -0.876 0.073 0.332 0.940 sum 16.882 0.355 -15.880 23.180 Atomic orbital electron populations 1.23690 0.96063 1.01096 1.00637 1.23525 0.96710 0.99742 1.00171 1.21295 0.94618 0.94293 0.93893 1.62460 1.13031 1.44972 1.04162 1.19780 0.92323 0.97064 0.84253 1.21073 1.23024 0.99740 1.10184 0.92103 1.24960 0.97055 0.96317 0.96212 1.69947 1.38478 1.29637 1.15756 0.86609 0.80048 0.83552 0.77472 1.20349 1.21461 1.20250 1.21032 0.93653 0.94193 0.95138 1.19944 0.95896 0.98157 0.95095 1.20938 0.98177 0.98750 0.91501 1.20327 0.94318 1.01686 1.00082 1.18874 0.91592 0.97097 0.85544 1.86042 1.35772 1.66296 1.33209 1.21810 0.88106 0.98018 0.92710 1.23073 0.79600 0.76036 0.90848 1.90728 1.66254 1.45683 1.34222 1.86448 1.37900 1.65362 1.37648 1.23338 0.96750 1.02727 0.82801 1.21179 1.03093 1.06036 0.92419 1.20865 0.93249 0.95198 0.98491 0.88506 0.89744 0.88707 0.89965 0.91701 0.97626 0.95918 0.92996 0.94638 0.90577 0.85411 0.85414 0.87457 0.87573 0.87622 0.91616 0.91587 0.85690 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.32 29.01 0.42 -2.71 16 2 C -0.18 -3.25 7.39 -36.03 -0.27 -3.52 16 3 C 0.09 1.65 5.32 -4.98 -0.03 1.62 16 4 N -0.52 -10.82 4.66 -238.96 -1.11 -11.93 16 5 C 0.19 4.80 4.56 -4.98 -0.02 4.77 16 6 C -0.50 -13.81 8.52 -34.44 -0.29 -14.10 16 7 H 0.06 1.68 7.57 -52.49 -0.40 1.28 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.09 1.51 4.96 -4.98 -0.02 1.48 16 15 C -0.09 -1.34 4.90 -104.60 -0.51 -1.85 16 16 C -0.08 -1.02 7.87 -39.61 -0.31 -1.33 16 17 C -0.15 -1.90 9.99 -39.44 -0.39 -2.29 16 18 C 0.11 1.44 6.69 -39.22 -0.26 1.17 16 19 O -0.30 -3.70 9.67 -39.39 -0.38 -4.08 16 20 C 0.07 0.60 5.33 36.00 0.19 0.80 16 21 C 0.46 4.65 8.03 36.00 0.29 4.94 16 22 O -0.48 -6.55 16.25 -25.48 -0.41 -6.97 16 23 O -0.36 -2.88 10.56 -39.27 -0.41 -3.29 16 24 C 0.04 0.20 10.56 101.05 1.07 1.27 16 25 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 26 C -0.06 -0.80 9.69 -39.60 -0.38 -1.19 16 27 H 0.10 1.77 7.84 -52.49 -0.41 1.35 16 28 H 0.08 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.09 1.58 6.84 -52.49 -0.36 1.22 16 30 H 0.08 1.72 6.96 -51.93 -0.36 1.36 16 31 H 0.06 1.11 5.77 -51.93 -0.30 0.81 16 32 H 0.01 0.16 6.70 -51.93 -0.35 -0.19 16 33 H 0.02 0.61 7.84 -51.93 -0.41 0.21 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.04 0.60 6.34 -51.92 -0.33 0.27 16 36 H 0.08 1.30 7.82 -51.93 -0.41 0.90 16 37 H 0.13 1.62 7.92 -52.49 -0.42 1.21 16 38 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.11 0.71 7.66 -51.93 -0.40 0.32 16 40 H 0.11 0.66 7.66 -51.93 -0.40 0.26 16 41 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 43 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 45 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -32.76 378.02 -8.43 -41.19 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.53 Total: 0.77 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.99 Total: -12.28 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.38 Total: -37.57 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.21 Total: -14.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.76 -8.43 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430100774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.171 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds