Wall clock time and date at job start Tue Mar 31 2020 12:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99941 * 2 1 4 4 N 1.46897 * 109.47092 * 124.16235 * 3 2 1 5 5 C 1.46901 * 111.00269 * 301.33233 * 4 3 2 6 6 C 1.50695 * 109.47061 * 289.39516 * 5 4 3 7 7 H 1.07996 * 120.00115 * 355.37070 * 6 5 4 8 8 C 1.37882 * 120.00316 * 175.37054 * 6 5 4 9 9 N 1.31514 * 119.99444 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00309 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47189 * 60.00050 * 10 8 6 12 12 H 1.48503 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47145 * 300.00017 * 10 8 6 14 14 C 1.46901 * 110.99989 * 65.28782 * 4 3 2 15 15 C 1.50697 * 109.47485 * 66.04271 * 14 4 3 16 16 C 1.38259 * 119.94794 * 270.30275 * 15 14 4 17 17 C 1.38139 * 120.05774 * 180.29509 * 16 15 14 18 18 C 1.38728 * 119.94426 * 359.42703 * 17 16 15 19 19 O 1.35903 * 120.05813 * 180.29770 * 18 17 16 20 20 C 1.42906 * 116.99827 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.46740 * 179.97438 * 20 19 18 22 22 O 1.20829 * 120.00521 * 359.97438 * 21 20 19 23 23 O 1.34234 * 120.00124 * 180.02562 * 21 20 19 24 24 C 1.45193 * 117.00344 * 179.97438 * 23 21 20 25 25 C 1.38733 * 119.88737 * 0.27425 * 18 17 16 26 26 C 1.38148 * 119.94592 * 359.97438 * 25 18 17 27 27 H 1.07998 * 119.99752 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99968 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00088 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47297 * 4.16116 * 3 2 1 31 31 H 1.09004 * 109.47062 * 244.16169 * 3 2 1 32 32 H 1.09002 * 109.47006 * 49.39350 * 5 4 3 33 33 H 1.08999 * 109.47509 * 169.39564 * 5 4 3 34 34 H 0.97006 * 120.00046 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.46987 * 306.04086 * 14 4 3 36 36 H 1.09002 * 109.47093 * 186.04891 * 14 4 3 37 37 H 1.08001 * 119.97206 * 0.02562 * 16 15 14 38 38 H 1.08005 * 120.03027 * 179.69720 * 17 16 15 39 39 H 1.08992 * 109.47225 * 299.99977 * 20 19 18 40 40 H 1.09003 * 109.46855 * 60.00355 * 20 19 18 41 41 H 1.09004 * 109.47162 * 179.97438 * 24 23 21 42 42 H 1.08999 * 109.47098 * 300.00024 * 24 23 21 43 43 H 1.08999 * 109.46823 * 59.99993 * 24 23 21 44 44 H 1.08004 * 120.02698 * 180.02562 * 25 18 17 45 45 H 1.07996 * 119.97319 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2510 1.1885 2.4112 6 6 1.4497 2.4359 2.6812 7 1 1.5378 3.2874 2.0227 8 6 0.6040 2.4902 3.7688 9 7 0.4971 1.4535 4.5710 10 14 -0.3887 4.0366 4.1039 11 1 -1.2752 4.3163 2.9459 12 1 -1.2132 3.8410 5.3234 13 1 0.5337 5.1822 4.3091 14 6 4.0264 0.3157 1.0152 15 6 4.9085 0.6449 -0.1614 16 6 4.5924 0.1615 -1.4176 17 6 5.4028 0.4568 -2.4966 18 6 6.5282 1.2489 -2.3212 19 8 7.3237 1.5458 -3.3823 20 6 8.4652 2.3670 -3.1276 21 6 9.2219 2.5875 -4.4120 22 8 8.8249 2.0919 -5.4400 23 8 10.3378 3.3336 -4.4140 24 6 11.0153 3.5030 -5.6869 25 6 6.8398 1.7378 -1.0609 26 6 6.0290 1.4354 0.0160 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3576 2.1322 0.0746 31 1 2.6331 1.3958 -0.9250 32 1 1.5792 0.3329 2.3423 33 1 2.9600 1.0293 3.2236 34 1 -0.0981 1.4915 5.3360 35 1 3.5624 -0.6585 0.8602 36 1 4.6273 0.2913 1.9243 37 1 3.7135 -0.4510 -1.5546 38 1 5.1581 0.0750 -3.4769 39 1 8.1400 3.3273 -2.7276 40 1 9.1140 1.8729 -2.4043 41 1 11.8991 4.1258 -5.5481 42 1 11.3143 2.5281 -6.0720 43 1 10.3410 3.9826 -6.3964 44 1 7.7152 2.3550 -0.9218 45 1 6.2710 1.8160 0.9972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430100774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:34 Heat of formation + Delta-G solvation = -80.485212 kcal Electronic energy + Delta-G solvation = -25847.014011 eV Core-core repulsion = 22023.459617 eV Total energy + Delta-G solvation = -3823.554394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80308 -41.00105 -39.53549 -37.99937 -37.44658 -34.80033 -33.87914 -32.18582 -31.78150 -30.57435 -28.88189 -28.03963 -27.20324 -25.39820 -23.90344 -22.92008 -22.28377 -21.86179 -20.24754 -19.51836 -18.45395 -18.32498 -18.01446 -17.97085 -17.00934 -16.63253 -16.50317 -16.27761 -16.08332 -16.02225 -15.33915 -15.04432 -14.70825 -14.50488 -14.41970 -14.26498 -13.97491 -13.80032 -13.46675 -13.16603 -12.99177 -12.89612 -12.71962 -12.56781 -12.35245 -12.21787 -12.14824 -11.96764 -11.89664 -11.88213 -11.80741 -11.52870 -11.22628 -10.55326 -10.17325 -9.86084 -9.13019 -8.85254 -8.13398 -6.21982 0.42974 0.47915 0.97359 1.08351 1.42468 1.44452 1.48287 1.52276 2.43363 2.53708 2.79043 3.18832 3.56405 3.60873 3.88849 3.95826 4.01806 4.02507 4.09033 4.12209 4.27431 4.28115 4.31409 4.40105 4.50211 4.59966 4.63587 4.70440 4.77400 4.86984 5.00514 5.12025 5.17233 5.19617 5.27853 5.30433 5.36831 5.46041 5.70244 5.74842 5.78110 5.80065 5.94346 6.15086 6.33927 6.43098 6.57394 6.69497 6.93867 7.46506 8.96067 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.002313 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.126989 B =12101.728333 C =12714.927116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.207 3.793 6 C -0.513 4.513 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.092 3.908 15 C -0.108 4.108 16 C -0.076 4.076 17 C -0.155 4.155 18 C 0.116 3.884 19 O -0.318 6.318 20 C 0.062 3.938 21 C 0.467 3.533 22 O -0.528 6.528 23 O -0.353 6.353 24 C 0.029 3.971 25 C -0.200 4.200 26 C -0.067 4.067 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.086 0.914 32 H -0.017 1.017 33 H -0.002 1.002 34 H 0.262 0.738 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.160 0.840 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.046 1.173 -16.658 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.207 4.207 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.035 4.035 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.173 4.173 18 C 0.071 3.929 19 O -0.233 6.233 20 C -0.013 4.013 21 C 0.310 3.690 22 O -0.417 6.417 23 O -0.269 6.269 24 C -0.064 4.064 25 C -0.218 4.218 26 C -0.086 4.086 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.001 0.999 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.177 0.823 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.107 1.403 -17.014 25.622 hybrid contribution -1.136 -0.253 0.483 1.260 sum 17.971 1.150 -16.530 24.445 Atomic orbital electron populations 1.23835 0.96192 1.01631 1.00227 1.23560 0.96885 0.99755 1.00486 1.21215 0.94287 0.94085 0.93975 1.62335 1.13334 1.46783 1.02817 1.19391 0.91308 0.95322 0.85827 1.21357 1.23349 1.00342 1.10120 0.92551 1.25785 0.98162 0.99372 0.96005 1.70069 1.39293 1.31611 1.16264 0.85579 0.78619 0.79811 0.77467 1.19548 1.21070 1.19505 1.20989 0.92868 0.93337 0.96313 1.19752 0.96530 1.00127 0.94497 1.20947 0.98556 0.98778 0.91174 1.20486 0.94631 1.01953 1.00266 1.18968 0.91382 0.96523 0.85982 1.86014 1.36849 1.66973 1.33432 1.22180 0.87460 0.99073 0.92591 1.23407 0.79660 0.75186 0.90730 1.90715 1.67488 1.47632 1.35817 1.86452 1.37131 1.64510 1.38852 1.23636 0.97535 1.03317 0.81914 1.21437 1.03581 1.05534 0.91241 1.21001 0.93193 0.95031 0.99381 0.89526 0.87740 0.87253 0.92382 0.89625 0.99946 0.98440 0.92942 0.94431 0.91168 0.84923 0.84580 0.84954 0.84584 0.84387 0.91787 0.91926 0.82256 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.36 14.32 67.78 0.97 -5.39 16 2 C -0.19 -6.66 7.39 25.64 0.19 -6.47 16 3 C 0.09 3.50 5.32 85.56 0.45 3.96 16 4 N -0.53 -22.17 4.66 -909.94 -4.24 -26.40 16 5 C 0.21 10.74 4.56 85.56 0.39 11.13 16 6 C -0.51 -28.71 8.52 25.60 0.22 -28.49 16 7 H 0.06 3.14 7.57 -2.91 -0.02 3.12 16 8 C 0.00 0.26 5.46 84.66 0.46 0.73 16 9 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 10 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 C 0.09 3.18 4.96 85.56 0.42 3.61 16 15 C -0.11 -3.12 4.90 -19.85 -0.10 -3.21 16 16 C -0.08 -1.98 7.87 22.25 0.18 -1.80 16 17 C -0.15 -3.79 9.99 22.36 0.22 -3.57 16 18 C 0.12 2.68 6.69 22.51 0.15 2.83 16 19 O -0.32 -7.19 9.67 -73.38 -0.71 -7.90 16 20 C 0.06 0.89 5.33 71.23 0.38 1.27 16 21 C 0.47 8.56 8.03 71.23 0.57 9.14 16 22 O -0.53 -14.00 16.25 28.39 0.46 -13.53 16 23 O -0.35 -4.94 10.56 -51.45 -0.54 -5.49 16 24 C 0.03 0.27 10.56 113.37 1.20 1.46 16 25 C -0.20 -4.12 9.04 22.37 0.20 -3.91 16 26 C -0.07 -1.71 9.69 22.26 0.22 -1.50 16 27 H 0.09 3.20 7.84 -2.91 -0.02 3.17 16 28 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.11 3.56 6.84 -2.91 -0.02 3.54 16 30 H 0.06 2.47 6.96 -2.39 -0.02 2.45 16 31 H 0.09 2.88 5.77 -2.38 -0.01 2.87 16 32 H -0.02 -0.96 6.70 -2.39 -0.02 -0.97 16 33 H 0.00 -0.14 7.84 -2.39 -0.02 -0.16 16 34 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 35 H 0.04 1.26 6.34 -2.38 -0.02 1.25 16 36 H 0.07 2.45 7.82 -2.39 -0.02 2.43 16 37 H 0.13 3.23 7.92 -2.91 -0.02 3.21 16 38 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.13 1.25 7.66 -2.39 -0.02 1.24 16 40 H 0.14 1.14 7.66 -2.39 -0.02 1.13 16 41 H 0.14 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 43 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 44 H 0.16 2.08 6.30 -2.91 -0.02 2.07 16 45 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -71.50 378.02 4.39 -67.11 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.98 Total: 15.35 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 6.13 Total: -20.24 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.95 Total: -81.63 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.79 Total: -26.92 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -71.50 4.39 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430100774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.379 kcal (2) G-P(sol) polarization free energy of solvation -71.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds