Wall clock time and date at job start Tue Mar 31 2020 12:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 117.00265 * 2 1 4 4 O 1.20831 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00324 * 180.02562 * 3 2 1 6 6 O 1.42899 * 109.47051 * 179.97438 * 5 3 2 7 7 C 1.35899 * 116.99826 * 179.97438 * 6 5 3 8 8 C 1.38738 * 120.05639 * 180.02562 * 7 6 5 9 9 C 1.38148 * 119.94269 * 180.02562 * 8 7 6 10 10 C 1.38254 * 120.05700 * 0.02720 * 9 8 7 11 11 C 1.50705 * 119.94581 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.46852 * 89.99913 * 11 10 9 13 13 C 1.46894 * 110.99880 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47155 * 185.38213 * 13 12 11 15 15 C 1.50708 * 115.54730 * 294.80053 * 14 13 12 16 16 H 1.07994 * 120.00501 * 95.20134 * 15 14 13 17 17 C 1.37881 * 119.99823 * 274.92856 * 15 14 13 18 18 N 1.31521 * 119.99926 * 355.42157 * 17 15 14 19 19 Si 1.86801 * 120.00038 * 175.41588 * 17 15 14 20 20 H 1.48495 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46745 * 120.00135 * 19 17 15 22 22 H 1.48498 * 109.47103 * 239.99813 * 19 17 15 23 23 C 1.52996 * 117.50305 * 80.46470 * 14 13 12 24 24 C 1.52994 * 117.50444 * 149.12972 * 14 13 12 25 25 C 1.38273 * 120.11446 * 0.24772 * 10 9 8 26 26 C 1.38144 * 120.04951 * 359.45432 * 25 10 9 27 27 H 1.08998 * 109.47054 * 59.99744 * 1 2 3 28 28 H 1.08995 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46564 * 300.00113 * 1 2 3 30 30 H 1.09005 * 109.46872 * 59.99816 * 5 3 2 31 31 H 1.08998 * 109.47145 * 300.00208 * 5 3 2 32 32 H 1.07994 * 120.02711 * 0.02562 * 8 7 6 33 33 H 1.07994 * 119.96851 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46881 * 330.00508 * 11 10 9 35 35 H 1.09001 * 109.47345 * 209.99753 * 11 10 9 36 36 H 1.00901 * 110.99671 * 303.95835 * 12 11 10 37 37 H 1.08995 * 109.47366 * 65.38019 * 13 12 11 38 38 H 1.09006 * 109.46837 * 305.37455 * 13 12 11 39 39 H 0.96995 * 119.99832 * 185.00406 * 18 17 15 40 40 H 1.08999 * 117.50032 * 215.00249 * 23 14 13 41 41 H 1.09002 * 117.49839 * 0.02981 * 23 14 13 42 42 H 1.09004 * 117.49798 * 359.97366 * 24 14 13 43 43 H 1.09005 * 117.50278 * 144.97026 * 24 14 13 44 44 H 1.08001 * 119.97362 * 179.70240 * 25 10 9 45 45 H 1.08005 * 120.02618 * 180.24897 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 8 3.9715 2.6452 -0.0011 7 6 5.3076 2.8935 -0.0011 8 6 5.7714 4.2011 -0.0010 9 6 7.1301 4.4508 -0.0016 10 6 8.0275 3.3991 -0.0028 11 6 9.5092 3.6744 -0.0040 12 7 9.9918 3.7633 1.3807 13 6 11.4354 4.0322 1.4188 14 6 11.9250 3.9847 2.8676 15 6 11.3750 5.0551 3.7748 16 1 10.5093 4.8514 4.3875 17 6 11.9806 6.2927 3.8270 18 7 13.0896 6.5110 3.1545 19 14 11.2258 7.6594 4.8526 20 1 9.9895 7.1616 5.5075 21 1 12.1954 8.0924 5.8906 22 1 10.8929 8.8104 3.9753 23 6 12.1893 2.6075 3.4793 24 6 13.3620 3.5205 3.1129 25 6 7.5679 2.0950 -0.0086 26 6 6.2102 1.8400 -0.0018 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7806 0.8891 32 1 5.0708 5.0230 -0.0005 33 1 7.4916 5.4685 -0.0011 34 1 9.7033 4.6160 -0.5175 35 1 10.0286 2.8660 -0.5185 36 1 9.4802 4.4627 1.8977 37 1 11.6323 5.0194 1.0009 38 1 11.9609 3.2780 0.8329 39 1 13.5549 7.3569 3.2479 40 1 11.9655 2.4756 4.5379 41 1 12.0149 1.7352 2.8494 42 1 13.9586 3.2485 2.2422 43 1 13.9099 3.9896 3.9302 44 1 8.2709 1.2752 -0.0144 45 1 5.8516 0.8212 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430757205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:24 Heat of formation + Delta-G solvation = -66.757497 kcal Electronic energy + Delta-G solvation = -25422.193669 eV Core-core repulsion = 21599.234553 eV Total energy + Delta-G solvation = -3822.959115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05588 -40.08724 -38.04659 -36.91353 -36.67264 -34.26167 -31.88141 -31.28388 -30.63022 -29.64954 -27.47901 -26.08439 -25.11700 -23.12780 -22.96500 -21.61658 -20.95108 -20.71588 -19.03934 -18.75164 -17.69019 -17.34340 -17.26629 -16.08118 -15.83299 -15.72616 -15.39025 -14.76416 -14.59291 -14.14645 -14.03145 -13.79254 -13.72450 -13.66922 -13.45157 -13.08215 -12.67261 -12.53473 -12.46179 -11.99315 -11.48678 -11.42644 -11.30147 -11.15994 -11.02545 -10.95840 -10.93137 -10.81677 -10.70471 -10.40958 -10.06564 -9.32392 -8.97951 -8.81918 -8.37916 -8.25027 -7.95770 -7.50179 -6.00040 -4.07182 1.35515 1.42562 1.68873 1.72023 3.24716 3.27784 3.37034 3.41491 3.75604 4.18513 4.41373 4.50307 4.54374 4.64193 4.73311 4.81254 4.84341 4.93835 5.05668 5.21535 5.28079 5.33241 5.43603 5.58096 5.66173 5.79560 5.81681 5.98686 6.08881 6.20182 6.24607 6.35477 6.50092 6.58200 6.69548 6.76413 6.84602 6.86934 6.94644 7.18015 7.23065 7.27415 7.52427 7.63152 7.90418 7.97901 8.25412 8.52492 8.96987 9.58643 11.07047 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.002222 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.308786 B =12597.200974 C =13167.632403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.070 3.930 6 O -0.298 6.298 7 C 0.116 3.884 8 C -0.143 4.143 9 C -0.073 4.073 10 C -0.099 4.099 11 C 0.096 3.904 12 N -0.675 5.675 13 C 0.106 3.894 14 C 0.045 3.955 15 C -0.490 4.490 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.880 5.880 19 Si 0.886 3.114 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.200 4.200 24 C -0.156 4.156 25 C -0.058 4.058 26 C -0.209 4.209 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.348 0.652 37 H 0.031 0.969 38 H 0.039 0.961 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 -12.523 -9.791 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.007 4.007 6 O -0.212 6.212 7 C 0.072 3.928 8 C -0.162 4.162 9 C -0.092 4.092 10 C -0.100 4.100 11 C -0.033 4.033 12 N -0.307 5.307 13 C -0.023 4.023 14 C 0.045 3.955 15 C -0.528 4.528 16 H 0.078 0.922 17 C -0.135 4.135 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.238 4.238 24 C -0.194 4.194 25 C -0.077 4.077 26 C -0.228 4.228 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.146 0.854 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.040 -12.584 -9.817 24.845 hybrid contribution -0.343 1.584 0.358 1.660 sum -19.384 -11.000 -9.459 24.211 Atomic orbital electron populations 1.23343 0.75269 1.04069 1.02935 1.86446 1.24108 1.32408 1.84404 1.23055 0.91098 0.81915 0.73524 1.90734 1.66679 1.36185 1.43212 1.21816 0.88633 0.84614 1.05591 1.86049 1.21491 1.24094 1.89593 1.18895 0.80744 0.94463 0.98713 1.20356 0.95766 0.93938 1.06145 1.20946 0.91619 0.99414 0.97218 1.19897 0.95901 0.92996 1.01187 1.20848 0.89966 1.00007 0.92454 1.60524 1.05524 1.54918 1.09706 1.21467 0.85979 0.97350 0.97510 1.18755 0.94114 0.91206 0.91460 1.20510 1.13648 0.95036 1.23576 0.92168 1.25018 0.94985 0.98266 0.95206 1.70019 1.16296 1.24429 1.41011 0.86633 0.79557 0.82313 0.80120 1.19628 1.21141 1.21090 1.22861 1.06323 0.94883 0.99700 1.22499 0.92176 1.03376 1.01343 1.20829 0.94212 0.96669 0.96002 1.21179 0.94152 0.97879 1.09588 0.91613 0.87607 0.91553 0.87571 0.87428 0.85239 0.85229 0.95114 0.91038 0.83268 0.95085 0.94234 0.93215 0.90984 0.91800 0.92369 0.90020 0.85445 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.80 10.57 -39.26 -0.41 -3.22 16 3 C 0.46 4.56 8.03 36.00 0.29 4.85 16 4 O -0.48 -6.50 16.25 -25.48 -0.41 -6.92 16 5 C 0.07 0.58 5.33 36.00 0.19 0.77 16 6 O -0.30 -3.63 9.67 -39.38 -0.38 -4.01 16 7 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 8 C -0.14 -1.85 9.99 -39.43 -0.39 -2.24 16 9 C -0.07 -0.97 9.69 -39.61 -0.38 -1.36 16 10 C -0.10 -1.38 5.39 -104.60 -0.56 -1.94 16 11 C 0.10 1.48 5.80 -4.97 -0.03 1.45 16 12 N -0.68 -12.83 6.46 -115.06 -0.74 -13.57 16 13 C 0.11 2.30 5.54 -3.83 -0.02 2.28 16 14 C 0.05 1.10 1.65 -155.66 -0.26 0.85 16 15 C -0.49 -13.04 8.33 -34.43 -0.29 -13.33 16 16 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.07 1.83 5.43 -17.82 -0.10 1.73 16 18 N -0.88 -24.63 12.65 55.43 0.70 -23.93 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.20 -4.48 9.96 -26.70 -0.27 -4.74 16 24 C -0.16 -3.71 9.14 -26.70 -0.24 -3.95 16 25 C -0.06 -0.73 9.69 -39.60 -0.38 -1.11 16 26 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 27 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 28 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 30 H 0.11 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.11 0.68 7.66 -51.93 -0.40 0.28 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.35 7.04 8.30 -39.29 -0.33 6.71 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 2.10 8.14 -51.93 -0.42 1.67 16 44 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.13 1.01 6.30 -52.48 -0.33 0.68 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -31.46 386.31 -9.36 -40.82 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.91 Total: 6.11 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.00 Total: -16.99 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.04 Total: -37.49 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.21 Total: -14.15 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.46 -9.36 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430757205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.939 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds