Wall clock time and date at job start Tue Mar 31 2020 12:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 117.00265 * 2 1 4 4 O 1.20831 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00324 * 180.02562 * 3 2 1 6 6 O 1.42899 * 109.47051 * 179.97438 * 5 3 2 7 7 C 1.35899 * 116.99826 * 179.97438 * 6 5 3 8 8 C 1.38738 * 120.05639 * 180.02562 * 7 6 5 9 9 C 1.38148 * 119.94269 * 180.02562 * 8 7 6 10 10 C 1.38254 * 120.05700 * 0.02720 * 9 8 7 11 11 C 1.50705 * 119.94581 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.46852 * 89.99913 * 11 10 9 13 13 C 1.46894 * 110.99880 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47155 * 185.38213 * 13 12 11 15 15 C 1.50708 * 115.54730 * 294.80053 * 14 13 12 16 16 H 1.07994 * 120.00501 * 95.20134 * 15 14 13 17 17 C 1.37881 * 119.99823 * 274.92856 * 15 14 13 18 18 N 1.31521 * 119.99926 * 355.42157 * 17 15 14 19 19 Si 1.86801 * 120.00038 * 175.41588 * 17 15 14 20 20 H 1.48495 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46745 * 120.00135 * 19 17 15 22 22 H 1.48498 * 109.47103 * 239.99813 * 19 17 15 23 23 C 1.52996 * 117.50305 * 80.46470 * 14 13 12 24 24 C 1.52994 * 117.50444 * 149.12972 * 14 13 12 25 25 C 1.38273 * 120.11446 * 0.24772 * 10 9 8 26 26 C 1.38144 * 120.04951 * 359.45432 * 25 10 9 27 27 H 1.08998 * 109.47054 * 59.99744 * 1 2 3 28 28 H 1.08995 * 109.46875 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46564 * 300.00113 * 1 2 3 30 30 H 1.09005 * 109.46872 * 59.99816 * 5 3 2 31 31 H 1.08998 * 109.47145 * 300.00208 * 5 3 2 32 32 H 1.07994 * 120.02711 * 0.02562 * 8 7 6 33 33 H 1.07994 * 119.96851 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46881 * 330.00508 * 11 10 9 35 35 H 1.09001 * 109.47345 * 209.99753 * 11 10 9 36 36 H 1.00901 * 110.99671 * 303.95835 * 12 11 10 37 37 H 1.08995 * 109.47366 * 65.38019 * 13 12 11 38 38 H 1.09006 * 109.46837 * 305.37455 * 13 12 11 39 39 H 0.96995 * 119.99832 * 185.00406 * 18 17 15 40 40 H 1.08999 * 117.50032 * 215.00249 * 23 14 13 41 41 H 1.09002 * 117.49839 * 0.02981 * 23 14 13 42 42 H 1.09004 * 117.49798 * 359.97366 * 24 14 13 43 43 H 1.09005 * 117.50278 * 144.97026 * 24 14 13 44 44 H 1.08001 * 119.97362 * 179.70240 * 25 10 9 45 45 H 1.08005 * 120.02618 * 180.24897 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 8 3.9715 2.6452 -0.0011 7 6 5.3076 2.8935 -0.0011 8 6 5.7714 4.2011 -0.0010 9 6 7.1301 4.4508 -0.0016 10 6 8.0275 3.3991 -0.0028 11 6 9.5092 3.6744 -0.0040 12 7 9.9918 3.7633 1.3807 13 6 11.4354 4.0322 1.4188 14 6 11.9250 3.9847 2.8676 15 6 11.3750 5.0551 3.7748 16 1 10.5093 4.8514 4.3875 17 6 11.9806 6.2927 3.8270 18 7 13.0896 6.5110 3.1545 19 14 11.2258 7.6594 4.8526 20 1 9.9895 7.1616 5.5075 21 1 12.1954 8.0924 5.8906 22 1 10.8929 8.8104 3.9753 23 6 12.1893 2.6075 3.4793 24 6 13.3620 3.5205 3.1129 25 6 7.5679 2.0950 -0.0086 26 6 6.2102 1.8400 -0.0018 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7806 0.8891 32 1 5.0708 5.0230 -0.0005 33 1 7.4916 5.4685 -0.0011 34 1 9.7033 4.6160 -0.5175 35 1 10.0286 2.8660 -0.5185 36 1 9.4802 4.4627 1.8977 37 1 11.6323 5.0194 1.0009 38 1 11.9609 3.2780 0.8329 39 1 13.5549 7.3569 3.2479 40 1 11.9655 2.4756 4.5379 41 1 12.0149 1.7352 2.8494 42 1 13.9586 3.2485 2.2422 43 1 13.9099 3.9896 3.9302 44 1 8.2709 1.2752 -0.0144 45 1 5.8516 0.8212 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430757205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:23 Heat of formation + Delta-G solvation = -84.381278 kcal Electronic energy + Delta-G solvation = -25422.957893 eV Core-core repulsion = 21599.234553 eV Total energy + Delta-G solvation = -3823.723340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80883 -40.94472 -39.11661 -38.43470 -37.54503 -35.68674 -33.92564 -32.19735 -31.63533 -30.48790 -28.13542 -27.71270 -26.75869 -24.43335 -23.93733 -22.77324 -22.43633 -21.72177 -20.92115 -19.54241 -18.47278 -18.02882 -18.01931 -17.91640 -16.89381 -16.64312 -16.53543 -16.40112 -15.89628 -15.60334 -15.33907 -14.93028 -14.80379 -14.53049 -14.42481 -14.30460 -13.89317 -13.52369 -13.38264 -13.15669 -13.03726 -12.96626 -12.86004 -12.68227 -12.30573 -12.19879 -12.04020 -11.92712 -11.89795 -11.86542 -11.54790 -11.18626 -10.79341 -10.35128 -9.93300 -9.89493 -9.20227 -8.98356 -8.06110 -6.17763 0.41189 0.45949 0.96508 1.07365 1.39198 1.43523 1.53491 2.43926 2.52255 2.76886 3.21076 3.46933 3.55336 3.84579 3.87777 3.96130 4.01546 4.03704 4.09468 4.27383 4.30599 4.33656 4.41272 4.48341 4.58392 4.68578 4.69901 4.73171 4.82557 4.83801 5.03078 5.07142 5.12620 5.14888 5.18787 5.29493 5.35043 5.39729 5.68536 5.74761 5.76207 5.77755 5.84710 6.31546 6.39034 6.51149 6.56578 6.64817 6.91873 7.50214 9.00498 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.002222 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.308786 B =12597.200974 C =13167.632403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.466 3.534 4 O -0.529 6.529 5 C 0.063 3.937 6 O -0.321 6.321 7 C 0.116 3.884 8 C -0.159 4.159 9 C -0.082 4.082 10 C -0.116 4.116 11 C 0.101 3.899 12 N -0.673 5.673 13 C 0.120 3.880 14 C 0.020 3.980 15 C -0.497 4.497 16 H 0.050 0.950 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.177 4.177 24 C -0.162 4.162 25 C -0.061 4.061 26 C -0.201 4.201 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.339 0.661 37 H 0.000 1.000 38 H 0.053 0.947 39 H 0.257 0.743 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.142 0.858 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -14.746 -10.161 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.309 3.691 4 O -0.418 6.418 5 C -0.013 4.013 6 O -0.235 6.235 7 C 0.071 3.929 8 C -0.178 4.178 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.028 4.028 12 N -0.303 5.303 13 C -0.009 4.009 14 C 0.019 3.981 15 C -0.536 4.536 16 H 0.068 0.932 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.214 4.214 24 C -0.200 4.200 25 C -0.080 4.080 26 C -0.219 4.219 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.156 0.844 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.251 -14.845 -10.191 27.099 hybrid contribution -0.084 2.169 0.460 2.219 sum -20.336 -12.676 -9.730 25.863 Atomic orbital electron populations 1.23637 0.73930 1.06163 1.02675 1.86451 1.25436 1.31233 1.83738 1.23438 0.91763 0.81736 0.72125 1.90720 1.67750 1.37686 1.45634 1.22196 0.87626 0.83159 1.08284 1.86016 1.21268 1.26692 1.89519 1.18990 0.81217 0.94559 0.98095 1.20478 0.95664 0.94861 1.06769 1.20982 0.91941 0.99494 0.97613 1.19811 0.94773 0.94018 1.03101 1.20857 0.91339 1.00277 0.90315 1.60520 1.03799 1.54064 1.11939 1.21194 0.87857 0.96118 0.95741 1.18944 0.94455 0.91952 0.92717 1.20710 1.13195 0.96002 1.23651 0.93162 1.25646 0.95368 1.00208 0.96423 1.70117 1.17364 1.24850 1.42300 0.85718 0.78772 0.79745 0.78684 1.19250 1.21080 1.20899 1.22832 1.04149 0.94674 0.99784 1.22401 0.92269 1.04239 1.01093 1.21046 0.95233 0.96289 0.95409 1.21491 0.93239 0.99281 1.07888 0.91824 0.84316 0.91988 0.84388 0.84835 0.85074 0.85347 0.95535 0.89784 0.84382 0.98132 0.92837 0.93346 0.91339 0.89378 0.91094 0.92628 0.84004 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -4.80 10.57 -51.43 -0.54 -5.34 16 3 C 0.47 8.46 8.03 71.23 0.57 9.03 16 4 O -0.53 -14.13 16.25 28.38 0.46 -13.67 16 5 C 0.06 0.86 5.33 71.23 0.38 1.24 16 6 O -0.32 -7.25 9.67 -73.34 -0.71 -7.96 16 7 C 0.12 2.65 6.69 22.51 0.15 2.80 16 8 C -0.16 -4.01 9.99 22.37 0.22 -3.79 16 9 C -0.08 -2.15 9.69 22.25 0.22 -1.93 16 10 C -0.12 -3.09 5.39 -19.85 -0.11 -3.20 16 11 C 0.10 3.00 5.80 85.56 0.50 3.50 16 12 N -0.67 -25.10 6.46 -517.93 -3.35 -28.44 16 13 C 0.12 5.19 5.54 86.30 0.48 5.66 16 14 C 0.02 0.97 1.65 -52.93 -0.09 0.88 16 15 C -0.50 -26.68 8.33 25.60 0.21 -26.46 16 16 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 17 C 0.02 1.27 5.43 84.65 0.46 1.73 16 18 N -0.91 -51.55 12.65 21.45 0.27 -51.28 16 19 Si 0.94 43.37 29.54 68.60 2.03 45.40 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 C -0.18 -7.66 9.96 30.62 0.30 -7.36 16 24 C -0.16 -7.67 9.14 30.62 0.28 -7.39 16 25 C -0.06 -1.37 9.69 22.26 0.22 -1.15 16 26 C -0.20 -3.80 9.04 22.36 0.20 -3.60 16 27 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 28 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.14 1.02 7.66 -2.38 -0.02 1.00 16 31 H 0.13 1.16 7.66 -2.39 -0.02 1.14 16 32 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 36 H 0.34 13.73 8.30 -89.69 -0.74 12.98 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.05 2.13 8.08 -2.38 -0.02 2.11 16 39 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 40 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 44 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -68.33 386.31 3.60 -64.73 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.24 Total: 25.14 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 5.19 Total: -28.58 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.07 Total: -79.72 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.79 Total: -26.97 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.33 3.60 -64.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430757205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.649 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds