Wall clock time and date at job start Tue Mar 31 2020 12:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 113.99824 * 2 1 4 4 C 1.52999 * 109.47269 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47470 * 64.99839 * 4 3 2 6 6 C 1.35711 * 117.00426 * 180.02562 * 5 4 3 7 7 C 1.38993 * 119.91391 * 180.02562 * 6 5 4 8 8 C 1.37702 * 120.08650 * 179.97438 * 7 6 5 9 9 C 1.39729 * 119.91105 * 0.02562 * 8 7 6 10 10 C 1.47610 * 120.08711 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99860 * 5.15813 * 10 9 8 12 12 N 1.34772 * 120.00251 * 185.15336 * 10 9 8 13 13 C 1.46499 * 120.00291 * 185.07812 * 12 10 9 14 14 C 1.53001 * 109.47367 * 184.99324 * 13 12 10 15 15 C 1.50693 * 115.54647 * 54.24064 * 14 13 12 16 16 H 1.08009 * 119.99879 * 215.59593 * 15 14 13 17 17 C 1.37881 * 120.00528 * 35.31700 * 15 14 13 18 18 N 1.31508 * 119.99484 * 355.78140 * 17 15 14 19 19 Si 1.86798 * 120.00296 * 175.78145 * 17 15 14 20 20 H 1.48505 * 109.47185 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46844 * 119.99790 * 19 17 15 22 22 H 1.48496 * 109.47293 * 240.00022 * 19 17 15 23 23 C 1.52995 * 117.49998 * 199.90990 * 14 13 12 24 24 C 1.52998 * 117.49644 * 268.56730 * 14 13 12 25 25 C 1.39737 * 119.82887 * 0.27519 * 9 8 7 26 26 C 1.37701 * 119.90402 * 359.46962 * 25 9 8 27 27 H 1.09004 * 109.47397 * 299.99380 * 1 2 3 28 28 H 1.08998 * 109.47637 * 59.99787 * 1 2 3 29 29 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46866 * 60.00059 * 3 2 1 31 31 H 1.09000 * 109.47314 * 299.99901 * 3 2 1 32 32 H 1.09005 * 109.47152 * 304.99934 * 4 3 2 33 33 H 1.08998 * 109.47575 * 185.00456 * 4 3 2 34 34 H 1.07993 * 119.95309 * 359.97438 * 7 6 5 35 35 H 1.07998 * 120.04451 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00231 * 5.07417 * 12 10 9 37 37 H 1.09000 * 109.46729 * 64.99310 * 13 12 10 38 38 H 1.08999 * 109.46786 * 304.99689 * 13 12 10 39 39 H 0.96997 * 120.00016 * 184.99363 * 18 17 15 40 40 H 1.08997 * 117.50052 * 215.00257 * 23 14 13 41 41 H 1.09007 * 117.49937 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.50522 * 359.97438 * 24 14 13 43 43 H 1.09007 * 117.49277 * 144.97336 * 24 14 13 44 44 H 1.07997 * 120.04500 * 179.70038 * 25 9 8 45 45 H 1.07998 * 119.95283 * 180.25539 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2219 6 6 5.3000 0.3983 -1.3834 7 6 5.7844 -0.1843 -2.5487 8 6 7.1385 -0.3697 -2.7166 9 6 8.0259 0.0282 -1.7133 10 6 9.4781 -0.1692 -1.8889 11 8 9.9111 -0.5914 -2.9437 12 7 10.3242 0.1185 -0.8800 13 6 11.7714 0.0292 -1.0896 14 6 12.4951 0.2828 0.2343 15 6 12.0689 -0.5910 1.3857 16 1 12.0385 -0.1878 2.3873 17 6 11.7121 -1.9036 1.1599 18 7 11.6637 -2.3697 -0.0688 19 14 11.2976 -3.0197 2.5993 20 1 11.4260 -2.2593 3.8684 21 1 9.9042 -3.5134 2.4575 22 1 12.2322 -4.1735 2.6163 23 6 13.9670 0.6947 0.1672 24 6 12.9010 1.7231 0.5529 25 6 7.5345 0.6078 -0.5405 26 6 6.1794 0.7945 -0.3826 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0890 34 1 5.0978 -0.4919 -3.3234 35 1 7.5141 -0.8228 -3.6221 36 1 9.9750 0.3849 -0.0152 37 1 12.0794 0.7764 -1.8210 38 1 12.0245 -0.9652 -1.4574 39 1 11.3434 -3.2703 -0.2336 40 1 14.6272 0.3337 0.9559 41 1 14.4198 0.7854 -0.8202 42 1 12.6528 2.4900 -0.1808 43 1 12.8593 2.0388 1.5954 44 1 8.2169 0.9122 0.2392 45 1 5.7991 1.2462 0.5217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431152397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:31 Heat of formation + Delta-G solvation = -84.078458 kcal Electronic energy + Delta-G solvation = -26208.513992 eV Core-core repulsion = 22384.803783 eV Total energy + Delta-G solvation = -3823.710209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39370 -40.38125 -38.92859 -38.45582 -37.70912 -34.84182 -34.12240 -32.42185 -31.77667 -30.65413 -27.85888 -27.33007 -27.05668 -24.65703 -24.23126 -22.96817 -22.59660 -21.18615 -21.03033 -19.52571 -18.80265 -17.81354 -17.80229 -17.32938 -16.73793 -16.57544 -16.33307 -16.21567 -15.94601 -15.82047 -15.62747 -15.25324 -14.87032 -14.56858 -14.32486 -14.05142 -13.76143 -13.51120 -13.46208 -13.34878 -13.09047 -12.93644 -12.61062 -12.54762 -12.30023 -12.26418 -12.02117 -11.84935 -11.76411 -11.54321 -10.93295 -10.77466 -10.65394 -10.62639 -10.14493 -10.09151 -9.69450 -9.19125 -7.92179 -6.18957 -0.03960 0.32950 1.40591 1.46148 1.54700 2.02415 2.11987 2.41422 2.55630 2.81909 2.93793 3.09947 3.65171 3.71143 3.85005 3.99464 4.01475 4.13309 4.22764 4.29620 4.35773 4.37975 4.46239 4.52670 4.55340 4.56350 4.63405 4.73961 4.76960 4.82457 4.87996 4.96817 4.97745 5.10058 5.15753 5.24162 5.31665 5.46176 5.54625 5.61716 5.63118 5.91981 6.01254 6.19595 6.37070 6.38278 6.80093 6.99998 7.46597 7.55910 8.93019 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.002917 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.221529 B = 9597.548730 C =10324.678056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.060 3.940 4 C 0.046 3.954 5 O -0.316 6.316 6 C 0.152 3.848 7 C -0.163 4.163 8 C -0.033 4.033 9 C -0.186 4.186 10 C 0.545 3.455 11 O -0.604 6.604 12 N -0.672 5.672 13 C 0.174 3.826 14 C 0.005 3.995 15 C -0.501 4.501 16 H 0.061 0.939 17 C 0.033 3.967 18 N -0.889 5.889 19 Si 0.948 3.052 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.289 1.289 23 C -0.201 4.201 24 C -0.183 4.183 25 C -0.044 4.044 26 C -0.210 4.210 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.402 0.598 37 H 0.017 0.983 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.141 0.859 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.115 9.940 2.377 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.016 4.016 4 C -0.028 4.028 5 O -0.229 6.229 6 C 0.105 3.895 7 C -0.182 4.182 8 C -0.052 4.052 9 C -0.189 4.189 10 C 0.333 3.667 11 O -0.488 6.488 12 N -0.318 5.318 13 C 0.050 3.950 14 C 0.004 3.996 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.168 4.168 18 N -0.526 5.526 19 Si 0.775 3.225 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.216 1.216 23 C -0.239 4.239 24 C -0.221 4.221 25 C -0.063 4.063 26 C -0.228 4.228 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.238 0.762 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.817 9.274 1.459 22.836 hybrid contribution 0.079 -0.619 0.974 1.156 sum -20.739 8.655 2.433 22.604 Atomic orbital electron populations 1.22908 0.79372 1.03641 1.01085 1.87933 1.21611 1.28679 1.95681 1.22757 0.90568 0.85249 1.03041 1.23272 0.94786 0.99547 0.85224 1.86077 1.19256 1.76717 1.40872 1.19295 0.82907 0.93257 0.93995 1.20477 0.94642 1.04898 0.98151 1.21057 0.91975 0.94449 0.97744 1.19953 0.92269 1.08384 0.98296 1.18582 0.86988 0.77330 0.83766 1.90649 1.79652 1.48898 1.29635 1.45431 1.06811 1.66036 1.13523 1.20771 0.78945 1.00492 0.94824 1.19292 0.93099 0.92951 0.94246 1.20717 1.45786 0.94676 0.92694 0.92100 1.25617 0.94959 0.98961 0.97305 1.70068 1.45661 1.16880 1.19983 0.85659 0.77262 0.79054 0.80571 1.18668 1.21182 1.21581 1.22965 0.94075 1.06256 1.00639 1.22952 1.05312 0.92843 1.00951 1.21310 0.96054 0.93800 0.95099 1.21407 0.92757 1.07583 1.01073 0.92415 0.93206 0.89289 0.88154 0.91558 0.90672 0.87537 0.83146 0.85066 0.76186 0.96464 0.90235 0.93559 0.90378 0.90675 0.89648 0.89519 0.84084 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.64 10.67 -144.35 -1.54 -9.18 16 3 C 0.06 0.73 6.32 71.98 0.45 1.19 16 4 C 0.05 0.67 5.12 71.98 0.37 1.04 16 5 O -0.32 -7.09 10.09 -85.69 -0.86 -7.96 16 6 C 0.15 3.83 6.70 22.63 0.15 3.98 16 7 C -0.16 -4.46 9.97 22.32 0.22 -4.23 16 8 C -0.03 -1.09 9.58 22.50 0.22 -0.88 16 9 C -0.19 -6.75 5.88 -20.08 -0.12 -6.86 16 10 C 0.54 24.63 7.75 86.72 0.67 25.30 16 11 O -0.60 -31.82 16.33 -4.01 -0.07 -31.88 16 12 N -0.67 -29.94 4.96 -466.19 -2.31 -32.25 16 13 C 0.17 8.50 4.62 86.38 0.40 8.90 16 14 C 0.00 0.22 2.04 -52.93 -0.11 0.11 16 15 C -0.50 -25.14 8.43 25.60 0.22 -24.92 16 16 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 17 C 0.03 1.72 5.31 84.66 0.45 2.17 16 18 N -0.89 -49.34 10.11 21.45 0.22 -49.12 16 19 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 C -0.20 -8.56 9.96 30.61 0.30 -8.25 16 24 C -0.18 -7.17 9.92 30.62 0.30 -6.87 16 25 C -0.04 -1.28 9.51 22.51 0.21 -1.07 16 26 C -0.21 -4.96 9.01 22.33 0.20 -4.76 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.10 7.65 -2.38 -0.02 1.08 16 33 H 0.11 0.99 7.66 -2.39 -0.02 0.98 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.13 4.46 7.65 -2.91 -0.02 4.44 16 36 H 0.40 16.45 6.20 -92.71 -0.57 15.88 16 37 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 38 H 0.08 4.57 5.89 -2.39 -0.01 4.55 16 39 H 0.25 14.05 8.32 -92.71 -0.77 13.28 16 40 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.14 3.79 6.46 -2.91 -0.02 3.77 16 45 H 0.16 2.67 6.28 -2.91 -0.02 2.65 16 Total: -1.00 -68.34 377.49 3.08 -65.26 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.42 Total: 34.98 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 5.20 Total: -13.63 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.10 Total: -81.37 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -2.47 Total: -49.02 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -68.34 3.08 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431152397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.820 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds