Wall clock time and date at job start Tue Mar 31 2020 12:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00215 * 2 1 4 4 C 1.52995 * 109.47082 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47524 * 65.00034 * 4 3 2 6 6 C 1.35894 * 117.00214 * 179.97438 * 5 4 3 7 7 C 1.38747 * 120.05848 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94851 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05217 * 359.74884 * 8 7 6 10 10 C 1.38244 * 120.11346 * 0.50134 * 9 8 7 11 11 C 1.50699 * 119.97502 * 179.77117 * 10 9 8 12 12 C 1.50703 * 109.46738 * 269.73034 * 11 10 9 13 13 O 1.21292 * 120.00676 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99490 * 180.27410 * 12 11 10 15 15 C 1.37103 * 119.99870 * 179.72214 * 14 12 11 16 16 H 1.07999 * 120.00045 * 224.28590 * 15 14 12 17 17 C 1.38947 * 119.99822 * 44.28687 * 15 14 12 18 18 N 1.31407 * 120.00265 * 18.21249 * 17 15 14 19 19 Si 1.86805 * 119.99589 * 198.21777 * 17 15 14 20 20 H 1.48499 * 109.47597 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47272 * 119.99978 * 19 17 15 22 22 H 1.48505 * 109.46918 * 239.99758 * 19 17 15 23 23 C 1.46500 * 120.00079 * 359.72559 * 14 12 11 24 24 C 1.53001 * 117.49798 * 183.22517 * 23 14 12 25 25 C 1.52991 * 59.99952 * 252.50775 * 24 23 14 26 26 C 1.38165 * 120.05070 * 359.49924 * 10 9 8 27 27 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47288 * 300.00049 * 1 2 3 29 29 H 1.08996 * 109.47265 * 60.00092 * 1 2 3 30 30 H 1.08998 * 109.47062 * 59.99888 * 3 2 1 31 31 H 1.09008 * 109.46659 * 299.99950 * 3 2 1 32 32 H 1.08994 * 109.47374 * 304.99430 * 4 3 2 33 33 H 1.09006 * 109.47050 * 184.99673 * 4 3 2 34 34 H 1.08004 * 120.02573 * 359.95239 * 7 6 5 35 35 H 1.08001 * 119.97126 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.94044 * 180.27815 * 9 8 7 37 37 H 1.08997 * 109.47225 * 149.72636 * 11 10 9 38 38 H 1.08999 * 109.47182 * 29.72445 * 11 10 9 39 39 H 0.97003 * 120.00001 * 174.92495 * 18 17 15 40 40 H 1.09001 * 115.54761 * 328.92680 * 23 14 12 41 41 H 1.09003 * 117.50029 * 359.97438 * 24 23 14 42 42 H 1.09003 * 117.49940 * 145.01262 * 24 23 14 43 43 H 1.08999 * 117.50068 * 252.50923 * 25 24 23 44 44 H 1.09004 * 117.52136 * 107.48130 * 25 24 23 45 45 H 1.08002 * 120.02575 * 180.22464 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3031 0.3982 -1.3811 7 6 6.1830 0.7947 -0.3843 8 6 7.5416 0.6092 -0.5501 9 6 8.0247 0.0240 -1.7062 10 6 7.1505 -0.3672 -2.7031 11 6 7.6807 -0.9999 -3.9639 12 6 7.9594 0.0727 -4.9852 13 8 7.7478 1.2363 -4.7160 14 7 8.4381 -0.2617 -6.2000 15 6 8.6863 0.7135 -7.1312 16 1 8.3781 0.5720 -8.1565 17 6 9.3342 1.8839 -6.7556 18 7 10.0196 1.9250 -5.6352 19 14 9.2308 3.3989 -7.8436 20 1 8.4053 3.0941 -9.0398 21 1 8.6090 4.5128 -7.0833 22 1 10.5964 3.7942 -8.2727 23 6 8.6932 -1.6672 -6.5253 24 6 9.3071 -1.9756 -7.8924 25 6 7.8378 -2.3050 -7.6217 26 6 5.7906 -0.1838 -2.5420 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8507 0.5686 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.8059 1.2484 0.5204 35 1 8.2269 0.9173 0.2257 36 1 9.0871 -0.1242 -1.8320 37 1 6.9412 -1.6956 -4.3601 38 1 8.6024 -1.5374 -3.7408 39 1 10.5320 2.7170 -5.4090 40 1 8.9887 -2.2976 -5.6867 41 1 9.5207 -1.1329 -8.5499 42 1 10.0068 -2.8091 -7.9534 43 1 7.5707 -3.3553 -7.5047 44 1 7.0847 -1.6791 -8.1007 45 1 5.1077 -0.4929 -3.3195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435014909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:41 Heat of formation + Delta-G solvation = -49.563309 kcal Electronic energy + Delta-G solvation = -26550.726754 eV Core-core repulsion = 22728.513234 eV Total energy + Delta-G solvation = -3822.213520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93767 -38.67873 -38.04985 -37.03132 -35.86384 -32.87894 -31.88396 -31.24110 -30.75757 -29.13745 -27.34563 -26.54773 -24.64507 -23.27067 -22.15256 -21.68462 -21.23406 -20.71209 -19.18317 -17.56501 -17.00844 -16.33938 -16.21845 -15.99612 -15.81021 -15.48993 -15.15213 -14.84332 -14.72140 -14.20684 -14.05875 -13.65154 -13.26354 -12.96112 -12.86905 -12.70913 -12.55733 -12.20586 -11.82975 -11.67439 -11.45688 -11.33084 -11.08289 -11.04602 -10.87345 -10.81718 -10.67353 -10.44735 -10.38847 -10.11037 -9.95960 -9.92307 -9.69589 -8.69256 -8.40555 -7.91489 -7.75052 -6.95938 -6.05832 -3.80623 1.76505 1.90892 3.28524 3.32384 3.42428 3.44462 3.48565 4.14173 4.21278 4.34952 4.68333 4.82107 4.87954 4.93904 4.99475 5.05450 5.11636 5.16260 5.21084 5.25449 5.34468 5.41598 5.43886 5.49786 5.62340 5.74342 5.79108 5.80828 5.84285 5.94587 6.08663 6.19257 6.26137 6.29264 6.44872 6.53658 6.66737 6.79103 6.84049 6.85481 6.96803 7.11906 7.19135 7.67337 7.72878 8.33289 9.12413 9.23405 9.72712 10.37042 11.03300 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003093 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.620813 B = 9051.756847 C = 9384.185936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.309 6.309 6 C 0.125 3.875 7 C -0.220 4.220 8 C -0.083 4.083 9 C -0.137 4.137 10 C -0.001 4.001 11 C -0.103 4.103 12 C 0.489 3.511 13 O -0.523 6.523 14 N -0.431 5.431 15 C -0.347 4.347 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.833 5.833 19 Si 0.910 3.090 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.286 1.286 23 C 0.076 3.924 24 C -0.174 4.174 25 C -0.208 4.208 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 -5.662 11.123 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.224 6.224 6 C 0.080 3.920 7 C -0.239 4.239 8 C -0.101 4.101 9 C -0.155 4.155 10 C -0.002 4.002 11 C -0.143 4.143 12 C 0.276 3.724 13 O -0.399 6.399 14 N -0.153 5.153 15 C -0.474 4.474 16 H 0.094 0.906 17 C -0.137 4.137 18 N -0.466 5.466 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.213 1.213 23 C -0.031 4.031 24 C -0.212 4.212 25 C -0.248 4.248 26 C -0.156 4.156 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.036 -5.093 11.304 16.599 hybrid contribution 0.046 1.097 -0.309 1.141 sum -10.990 -3.995 10.996 16.051 Atomic orbital electron populations 1.22751 0.81016 1.02910 0.99891 1.87979 1.19660 1.27213 1.95390 1.22591 0.91856 0.85656 1.01288 1.22748 0.93313 0.98265 0.86996 1.86098 1.20583 1.77126 1.38545 1.18845 0.81793 0.96596 0.94744 1.21030 0.94351 1.08712 0.99820 1.20788 0.94338 0.97537 0.97424 1.20905 0.99622 1.01195 0.93814 1.19227 0.91948 0.95045 0.93971 1.20772 1.01682 0.98749 0.93122 1.19571 0.80882 0.88860 0.83124 1.90558 1.52285 1.19721 1.77343 1.42780 1.57343 1.02234 1.12957 1.18849 1.40378 0.96496 0.91639 0.90616 1.25221 0.93661 0.99165 0.95612 1.69826 1.25173 1.28730 1.22869 0.86190 0.77428 0.82798 0.79860 1.19622 1.20728 1.21264 1.21695 1.02325 0.87321 0.91734 1.23054 0.94718 1.02729 1.00702 1.23313 0.94767 1.00179 1.06495 1.20181 0.95121 1.04013 0.96294 0.89531 0.94218 0.93896 0.91322 0.91981 0.91339 0.90591 0.86316 0.86310 0.86116 0.89607 0.89575 0.92765 0.88024 0.87540 0.89860 0.89824 0.89154 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.53 10.67 -40.08 -0.43 -4.96 16 3 C 0.06 0.62 6.32 37.15 0.23 0.86 16 4 C 0.06 0.72 5.12 37.15 0.19 0.91 16 5 O -0.31 -5.00 10.10 -24.25 -0.24 -5.25 16 6 C 0.12 2.18 6.69 -39.22 -0.26 1.92 16 7 C -0.22 -3.45 9.04 -39.44 -0.36 -3.81 16 8 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 9 C -0.14 -2.53 9.70 -39.56 -0.38 -2.91 16 10 C 0.00 -0.03 4.37 -104.65 -0.46 -0.48 16 11 C -0.10 -2.02 4.45 -29.03 -0.13 -2.15 16 12 C 0.49 12.46 6.96 -10.98 -0.08 12.39 16 13 O -0.52 -15.61 13.80 5.55 0.08 -15.53 16 14 N -0.43 -10.85 2.83 -107.73 -0.31 -11.15 16 15 C -0.35 -9.55 7.92 -14.93 -0.12 -9.67 16 16 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 17 C 0.07 2.10 4.39 -17.47 -0.08 2.02 16 18 N -0.83 -24.83 11.74 55.50 0.65 -24.18 16 19 Si 0.91 22.30 29.59 -169.99 -5.03 17.27 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 C 0.08 1.51 5.87 -67.93 -0.40 1.11 16 24 C -0.17 -3.15 9.80 -26.74 -0.26 -3.41 16 25 C -0.21 -3.57 10.36 -26.74 -0.28 -3.85 16 26 C -0.14 -2.61 9.64 -39.43 -0.38 -2.99 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.73 7.66 -51.93 -0.40 0.34 16 33 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 34 H 0.12 1.48 6.30 -52.48 -0.33 1.15 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 38 H 0.09 1.54 7.51 -51.93 -0.39 1.15 16 39 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 40 H 0.10 1.79 6.97 -51.93 -0.36 1.43 16 41 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -35.40 377.47 -8.44 -43.84 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.81 Total: 4.72 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.04 Total: -10.45 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.35 Total: -35.33 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.60 Total: -25.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.40 -8.44 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435014909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.721 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds