Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00215 * 2 1 4 4 C 1.52995 * 109.47082 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47524 * 65.00034 * 4 3 2 6 6 C 1.35894 * 117.00214 * 179.97438 * 5 4 3 7 7 C 1.38747 * 120.05848 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94851 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05217 * 359.74884 * 8 7 6 10 10 C 1.38244 * 120.11346 * 0.50134 * 9 8 7 11 11 C 1.50699 * 119.97502 * 179.77117 * 10 9 8 12 12 C 1.50703 * 109.46738 * 269.73034 * 11 10 9 13 13 O 1.21292 * 120.00676 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99490 * 180.27410 * 12 11 10 15 15 C 1.37103 * 119.99870 * 179.72214 * 14 12 11 16 16 H 1.07999 * 120.00045 * 224.28590 * 15 14 12 17 17 C 1.38947 * 119.99822 * 44.28687 * 15 14 12 18 18 N 1.31407 * 120.00265 * 18.21249 * 17 15 14 19 19 Si 1.86805 * 119.99589 * 198.21777 * 17 15 14 20 20 H 1.48499 * 109.47597 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47272 * 119.99978 * 19 17 15 22 22 H 1.48505 * 109.46918 * 239.99758 * 19 17 15 23 23 C 1.46500 * 120.00079 * 359.72559 * 14 12 11 24 24 C 1.53001 * 117.49798 * 183.22517 * 23 14 12 25 25 C 1.52991 * 59.99952 * 252.50775 * 24 23 14 26 26 C 1.38165 * 120.05070 * 359.49924 * 10 9 8 27 27 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47288 * 300.00049 * 1 2 3 29 29 H 1.08996 * 109.47265 * 60.00092 * 1 2 3 30 30 H 1.08998 * 109.47062 * 59.99888 * 3 2 1 31 31 H 1.09008 * 109.46659 * 299.99950 * 3 2 1 32 32 H 1.08994 * 109.47374 * 304.99430 * 4 3 2 33 33 H 1.09006 * 109.47050 * 184.99673 * 4 3 2 34 34 H 1.08004 * 120.02573 * 359.95239 * 7 6 5 35 35 H 1.08001 * 119.97126 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.94044 * 180.27815 * 9 8 7 37 37 H 1.08997 * 109.47225 * 149.72636 * 11 10 9 38 38 H 1.08999 * 109.47182 * 29.72445 * 11 10 9 39 39 H 0.97003 * 120.00001 * 174.92495 * 18 17 15 40 40 H 1.09001 * 115.54761 * 328.92680 * 23 14 12 41 41 H 1.09003 * 117.50029 * 359.97438 * 24 23 14 42 42 H 1.09003 * 117.49940 * 145.01262 * 24 23 14 43 43 H 1.08999 * 117.50068 * 252.50923 * 25 24 23 44 44 H 1.09004 * 117.52136 * 107.48130 * 25 24 23 45 45 H 1.08002 * 120.02575 * 180.22464 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3031 0.3982 -1.3811 7 6 6.1830 0.7947 -0.3843 8 6 7.5416 0.6092 -0.5501 9 6 8.0247 0.0240 -1.7062 10 6 7.1505 -0.3672 -2.7031 11 6 7.6807 -0.9999 -3.9639 12 6 7.9594 0.0727 -4.9852 13 8 7.7478 1.2363 -4.7160 14 7 8.4381 -0.2617 -6.2000 15 6 8.6863 0.7135 -7.1312 16 1 8.3781 0.5720 -8.1565 17 6 9.3342 1.8839 -6.7556 18 7 10.0196 1.9250 -5.6352 19 14 9.2308 3.3989 -7.8436 20 1 8.4053 3.0941 -9.0398 21 1 8.6090 4.5128 -7.0833 22 1 10.5964 3.7942 -8.2727 23 6 8.6932 -1.6672 -6.5253 24 6 9.3071 -1.9756 -7.8924 25 6 7.8378 -2.3050 -7.6217 26 6 5.7906 -0.1838 -2.5420 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8507 0.5686 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.8059 1.2484 0.5204 35 1 8.2269 0.9173 0.2257 36 1 9.0871 -0.1242 -1.8320 37 1 6.9412 -1.6956 -4.3601 38 1 8.6024 -1.5374 -3.7408 39 1 10.5320 2.7170 -5.4090 40 1 8.9887 -2.2976 -5.6867 41 1 9.5207 -1.1329 -8.5499 42 1 10.0068 -2.8091 -7.9534 43 1 7.5707 -3.3553 -7.5047 44 1 7.0847 -1.6791 -8.1007 45 1 5.1077 -0.4929 -3.3195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435014909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -71.651528 kcal Electronic energy + Delta-G solvation = -26551.684571 eV Core-core repulsion = 22728.513234 eV Total energy + Delta-G solvation = -3823.171337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20992 -40.33839 -39.06102 -38.21813 -37.52752 -34.81282 -33.45996 -32.65093 -32.21768 -30.30325 -28.92600 -27.25038 -26.51639 -24.28924 -23.47271 -23.13953 -22.80274 -22.11222 -20.89576 -18.84022 -18.20892 -17.81935 -17.75204 -17.31012 -16.97481 -16.73892 -16.46047 -16.14482 -16.02962 -15.80636 -15.52251 -15.16880 -14.81106 -14.50733 -14.21078 -14.01483 -13.67456 -13.50883 -13.17862 -13.09250 -12.90123 -12.75111 -12.59967 -12.51180 -12.33768 -12.26116 -12.16278 -12.05683 -11.77409 -11.68914 -11.61819 -11.18737 -10.71508 -10.67947 -10.01845 -9.64098 -9.08603 -8.92234 -8.17501 -5.94767 0.41950 0.56249 1.34176 1.42215 1.49325 2.21185 2.28408 2.44685 2.78296 2.80593 3.14406 3.24442 3.40322 3.79707 3.88828 4.01023 4.09342 4.15517 4.16204 4.21201 4.30540 4.33219 4.34508 4.42755 4.49783 4.51626 4.53263 4.55265 4.59378 4.67389 4.72737 4.85435 4.89821 4.92283 5.05872 5.15165 5.32370 5.35434 5.48968 5.50906 5.52628 5.75008 5.86776 6.17750 6.23716 6.52034 7.07063 7.25509 7.74263 8.41719 8.91092 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003093 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.620813 B = 9051.756847 C = 9384.185936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.062 3.938 4 C 0.050 3.950 5 O -0.329 6.329 6 C 0.120 3.880 7 C -0.215 4.215 8 C -0.080 4.080 9 C -0.159 4.159 10 C -0.022 4.022 11 C -0.088 4.088 12 C 0.475 3.525 13 O -0.579 6.579 14 N -0.447 5.447 15 C -0.354 4.354 16 H 0.074 0.926 17 C 0.023 3.977 18 N -0.868 5.868 19 Si 0.965 3.035 20 H -0.260 1.260 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.044 3.956 24 C -0.171 4.171 25 C -0.182 4.182 26 C -0.162 4.162 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.258 0.742 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 -6.604 12.169 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.024 4.024 5 O -0.244 6.244 6 C 0.075 3.925 7 C -0.233 4.233 8 C -0.098 4.098 9 C -0.178 4.178 10 C -0.022 4.022 11 C -0.128 4.128 12 C 0.264 3.736 13 O -0.459 6.459 14 N -0.169 5.169 15 C -0.481 4.481 16 H 0.092 0.908 17 C -0.184 4.184 18 N -0.503 5.503 19 Si 0.791 3.209 20 H -0.183 1.183 21 H -0.224 1.224 22 H -0.197 1.197 23 C -0.061 4.061 24 C -0.208 4.208 25 C -0.220 4.220 26 C -0.181 4.181 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.832 -6.083 12.313 18.128 hybrid contribution 0.170 1.340 -0.610 1.482 sum -11.662 -4.743 11.703 17.189 Atomic orbital electron populations 1.22927 0.79332 1.03797 1.01004 1.87925 1.21660 1.28404 1.95655 1.22724 0.90648 0.85339 1.02739 1.23153 0.94655 0.99036 0.85561 1.86085 1.19808 1.77479 1.40993 1.18978 0.82839 0.96098 0.94630 1.21413 0.93874 1.07569 1.00465 1.21178 0.95271 0.96130 0.97232 1.21074 0.99473 1.02359 0.94867 1.19293 0.92430 0.96255 0.94231 1.20638 1.03103 0.97255 0.91816 1.20493 0.79685 0.89441 0.83979 1.90504 1.54535 1.22292 1.78617 1.43020 1.57040 1.04136 1.12658 1.19061 1.39414 0.97606 0.92061 0.90788 1.26000 0.93713 1.01746 0.96908 1.69932 1.26630 1.29012 1.24732 0.85327 0.78055 0.79045 0.78481 1.18338 1.22444 1.19689 1.22038 1.05337 0.85003 0.93687 1.23107 0.96344 1.02921 0.98461 1.23319 0.93647 1.01733 1.03339 1.20265 0.95063 1.05510 0.97279 0.88898 0.92149 0.93681 0.87806 0.92447 0.90236 0.88834 0.82740 0.83119 0.86410 0.87410 0.87878 0.93322 0.85470 0.90201 0.86405 0.85688 0.90990 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.30 10.67 -144.35 -1.54 -10.84 16 3 C 0.06 1.10 6.32 71.98 0.45 1.56 16 4 C 0.05 1.07 5.12 71.98 0.37 1.44 16 5 O -0.33 -10.47 10.10 -87.73 -0.89 -11.36 16 6 C 0.12 4.13 6.69 22.50 0.15 4.28 16 7 C -0.21 -6.34 9.04 22.36 0.20 -6.14 16 8 C -0.08 -2.48 10.04 22.25 0.22 -2.26 16 9 C -0.16 -5.90 9.70 22.28 0.22 -5.68 16 10 C -0.02 -0.86 4.37 -19.88 -0.09 -0.94 16 11 C -0.09 -3.49 4.45 29.10 0.13 -3.36 16 12 C 0.47 24.83 6.96 87.66 0.61 25.44 16 13 O -0.58 -35.98 13.80 -3.07 -0.04 -36.02 16 14 N -0.45 -22.81 2.83 -613.13 -1.74 -24.55 16 15 C -0.35 -19.92 7.92 84.04 0.67 -19.26 16 16 H 0.07 4.06 7.26 -2.91 -0.02 4.04 16 17 C 0.02 1.31 4.39 84.93 0.37 1.69 16 18 N -0.87 -53.50 11.74 21.66 0.25 -53.24 16 19 Si 0.97 46.95 29.59 68.60 2.03 48.98 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C 0.04 1.71 5.87 44.99 0.26 1.98 16 24 C -0.17 -5.88 9.80 30.59 0.30 -5.58 16 25 C -0.18 -5.81 10.36 30.59 0.32 -5.49 16 26 C -0.16 -6.32 9.64 22.37 0.22 -6.10 16 27 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 33 H 0.09 1.63 7.66 -2.38 -0.02 1.62 16 34 H 0.16 3.34 6.30 -2.91 -0.02 3.32 16 35 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.11 3.68 8.05 -2.39 -0.02 3.66 16 38 H 0.10 3.64 7.51 -2.39 -0.02 3.62 16 39 H 0.26 15.32 8.32 -92.71 -0.77 14.55 16 40 H 0.13 4.21 6.97 -2.39 -0.02 4.19 16 41 H 0.08 3.19 6.72 -2.39 -0.02 3.18 16 42 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 45 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -80.68 377.47 4.71 -75.97 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.98 Total: 27.86 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.65 Total: -16.80 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.48 Total: -77.79 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -2.47 Total: -58.22 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.68 4.71 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435014909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.321 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds