Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99683 * 2 1 4 4 O 1.20824 * 120.00321 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99839 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.45293 * 32.44180 * 5 3 2 7 7 C 1.53041 * 109.46200 * 272.46894 * 5 3 2 8 8 H 1.09002 * 109.50245 * 60.86749 * 7 5 3 9 9 O 1.42899 * 109.53381 * 300.76312 * 7 5 3 10 10 C 1.53119 * 109.27552 * 180.80551 * 7 5 3 11 11 C 1.53113 * 109.16457 * 57.65587 * 10 7 5 12 12 C 1.53038 * 109.27538 * 302.34300 * 11 10 7 13 13 N 1.46849 * 109.52524 * 59.18327 * 12 11 10 14 14 C 1.46903 * 111.00297 * 174.16133 * 13 12 11 15 15 C 1.50698 * 109.47224 * 64.69408 * 14 13 12 16 16 C 1.38629 * 119.74998 * 269.72744 * 15 14 13 17 17 C 1.37624 * 120.24820 * 179.76594 * 16 15 14 18 18 C 1.40714 * 119.74368 * 0.52659 * 17 16 15 19 19 C 1.41394 * 120.24393 * 179.74482 * 18 17 16 20 20 H 1.08005 * 119.99750 * 25.90119 * 19 18 17 21 21 C 1.39948 * 120.00029 * 205.89666 * 19 18 17 22 22 N 1.30825 * 119.99791 * 15.07834 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 195.07474 * 21 19 18 24 24 H 1.48505 * 109.47439 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47259 * 120.00152 * 23 21 19 26 26 H 1.48503 * 109.47115 * 240.00273 * 23 21 19 27 27 C 1.40710 * 119.51060 * 359.72909 * 18 17 16 28 28 C 1.37618 * 119.74700 * 359.97438 * 27 18 17 29 29 H 1.09007 * 109.46977 * 60.00066 * 1 2 3 30 30 H 1.08994 * 109.46729 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46880 * 299.99938 * 1 2 3 32 32 H 0.96705 * 113.99088 * 180.17588 * 9 7 5 33 33 H 1.09007 * 109.52300 * 297.74869 * 10 7 5 34 34 H 1.08999 * 109.52194 * 177.56509 * 10 7 5 35 35 H 1.09003 * 109.50224 * 182.40592 * 11 10 7 36 36 H 1.08993 * 109.53816 * 62.30167 * 11 10 7 37 37 H 1.08997 * 109.46502 * 299.16035 * 12 11 10 38 38 H 1.09008 * 109.46295 * 179.19179 * 12 11 10 39 39 H 1.09000 * 109.46799 * 304.69331 * 14 13 12 40 40 H 1.08997 * 109.46644 * 184.69567 * 14 13 12 41 41 H 1.08005 * 119.87721 * 359.97438 * 16 15 14 42 42 H 1.08005 * 120.12483 * 180.23358 * 17 16 15 43 43 H 0.96996 * 119.99396 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.12851 * 179.97438 * 27 18 17 45 45 H 1.08003 * 119.87559 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9745 0.4276 -0.5504 7 6 4.0782 1.2398 1.4424 8 1 3.7762 0.3042 1.9131 9 8 3.5293 2.3396 2.1712 10 6 5.6061 1.3405 1.4390 11 6 6.0234 2.6280 0.7230 12 6 5.4551 2.6228 -0.6980 13 7 3.9910 2.5259 -0.6406 14 6 3.4018 2.6574 -1.9799 15 6 3.8333 1.4939 -2.8350 16 6 4.9906 1.5887 -3.5923 17 6 5.3968 0.5307 -4.3731 18 6 4.6266 -0.6463 -4.4093 19 6 5.0312 -1.7377 -5.2120 20 1 6.0744 -1.8690 -5.4589 21 6 4.0799 -2.6479 -5.6865 22 7 2.8079 -2.3447 -5.6472 23 14 4.6264 -4.2957 -6.3760 24 1 6.1067 -4.3937 -6.3096 25 1 4.0209 -5.3917 -5.5778 26 1 4.1862 -4.4114 -7.7896 27 6 3.4509 -0.7293 -3.6407 28 6 3.0671 0.3389 -2.8624 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8143 2.3810 3.0944 33 1 6.0266 0.4808 0.9171 34 1 5.9722 1.3594 2.4654 35 1 7.1111 2.6841 0.6797 36 1 5.6358 3.4894 1.2667 37 1 5.8544 1.7692 -1.2457 38 1 5.7384 3.5448 -1.2058 39 1 3.7395 3.5882 -2.4356 40 1 2.3148 2.6657 -1.8993 41 1 5.5775 2.4951 -3.5668 42 1 6.3008 0.6054 -4.9593 43 1 2.1486 -2.9754 -5.9764 44 1 2.8519 -1.6278 -3.6614 45 1 2.1653 0.2773 -2.2713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444728831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = -128.529603 kcal Electronic energy + Delta-G solvation = -28495.432307 eV Core-core repulsion = 24669.794552 eV Total energy + Delta-G solvation = -3825.637755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06857 -40.24320 -39.22874 -37.52041 -37.01098 -35.52435 -33.89976 -32.11650 -31.58536 -30.95396 -28.78948 -28.38601 -26.24932 -24.92338 -23.84779 -22.83547 -22.16355 -21.74296 -20.52877 -19.24961 -18.73917 -17.95804 -17.65931 -17.57673 -17.10522 -16.57737 -16.21932 -16.10467 -15.64692 -15.48098 -15.24597 -14.91660 -14.54873 -14.34061 -14.22221 -14.01558 -13.84678 -13.42710 -13.29461 -13.23468 -13.02703 -12.82074 -12.77516 -12.57225 -12.52298 -12.28980 -12.13989 -11.76069 -11.73762 -11.59536 -11.54162 -11.29604 -11.17132 -11.03105 -10.71691 -9.41555 -9.33494 -9.17104 -8.63991 -6.37464 0.87805 1.09858 1.17057 1.37267 1.47116 1.52281 1.64761 2.19308 2.66019 2.98901 3.22646 3.67721 3.71302 3.78188 3.97706 4.07895 4.13413 4.23492 4.25553 4.27344 4.29370 4.43351 4.46410 4.50984 4.60060 4.62766 4.77234 4.84735 4.91917 4.93696 5.01292 5.06939 5.13953 5.18150 5.31615 5.33816 5.41867 5.47155 5.65841 5.86670 5.92809 6.06309 6.08090 6.24366 6.34825 6.67019 6.77809 6.91612 6.97657 6.99756 8.32065 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004370 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.849092 B = 6406.417533 C = 7210.775942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.474 3.526 4 O -0.510 6.510 5 C 0.100 3.900 6 H 0.074 0.926 7 C 0.120 3.880 8 H 0.076 0.924 9 O -0.560 6.560 10 C -0.146 4.146 11 C -0.107 4.107 12 C 0.051 3.949 13 N -0.500 5.500 14 C 0.108 3.892 15 C -0.242 4.242 16 C -0.070 4.070 17 C -0.238 4.238 18 C 0.083 3.917 19 C -0.497 4.497 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.829 5.829 23 Si 0.982 3.018 24 H -0.257 1.257 25 H -0.264 1.264 26 H -0.267 1.267 27 C -0.181 4.181 28 C -0.093 4.093 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.392 0.608 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 3.250 14.274 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.317 3.683 4 O -0.397 6.397 5 C -0.010 4.010 6 H 0.092 0.908 7 C 0.061 3.939 8 H 0.093 0.907 9 O -0.368 6.368 10 C -0.183 4.183 11 C -0.145 4.145 12 C -0.076 4.076 13 N -0.224 5.224 14 C -0.020 4.020 15 C -0.245 4.245 16 C -0.089 4.089 17 C -0.257 4.257 18 C 0.081 3.919 19 C -0.527 4.527 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.455 5.455 23 Si 0.803 3.197 24 H -0.180 1.180 25 H -0.189 1.189 26 H -0.192 1.192 27 C -0.200 4.200 28 C -0.112 4.112 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.820 3.995 13.945 14.620 hybrid contribution -0.023 -1.535 -0.892 1.775 sum 1.797 2.460 13.053 13.404 Atomic orbital electron populations 1.23495 0.75008 1.05502 1.02316 1.86530 1.24980 1.33347 1.84002 1.23593 0.92096 0.81147 0.71464 1.90583 1.67246 1.36949 1.44942 1.21319 0.87173 0.94798 0.97703 0.90818 1.21703 0.94005 0.90209 0.87999 0.90659 1.86706 1.72934 1.49193 1.27972 1.22281 0.93568 0.99115 1.03385 1.21516 1.00740 0.98309 0.93903 1.22264 0.85285 1.01448 0.98631 1.62300 1.10117 1.31442 1.18541 1.20964 0.98606 0.95888 0.86493 1.20009 0.99618 0.97600 1.07229 1.20631 0.95511 0.97313 0.95399 1.21191 1.03311 0.94702 1.06527 1.17967 0.91682 0.92248 0.90027 1.19884 0.95401 1.08589 1.28781 0.90532 1.26768 0.94185 1.02907 0.94176 1.69885 1.02953 1.36525 1.36133 0.85153 0.79835 0.76449 0.78252 1.17996 1.18885 1.19191 1.21216 1.00359 0.98700 0.99766 1.20661 0.97703 0.94280 0.98602 0.92988 0.85288 0.91101 0.75889 0.91120 0.87692 0.89332 0.90592 0.95010 0.89728 0.89645 0.92594 0.86462 0.88278 0.90235 0.88363 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -12.66 9.76 -51.38 -0.50 -13.17 16 3 C 0.47 17.34 4.17 71.24 0.30 17.63 16 4 O -0.51 -20.84 14.82 21.97 0.33 -20.52 16 5 C 0.10 3.32 1.50 44.19 0.07 3.39 16 6 H 0.07 2.76 6.47 -2.39 -0.02 2.74 16 7 C 0.12 2.96 3.23 30.65 0.10 3.05 16 8 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 9 O -0.56 -13.73 12.26 -148.98 -1.83 -15.56 16 10 C -0.15 -2.79 5.70 30.67 0.17 -2.61 16 11 C -0.11 -2.22 5.94 30.64 0.18 -2.04 16 12 C 0.05 1.42 4.78 86.33 0.41 1.83 16 13 N -0.50 -16.71 4.34 -880.01 -3.82 -20.52 16 14 C 0.11 4.07 5.10 85.56 0.44 4.51 16 15 C -0.24 -10.33 4.06 -19.68 -0.08 -10.41 16 16 C -0.07 -2.96 8.07 22.22 0.18 -2.78 16 17 C -0.24 -11.46 9.80 22.73 0.22 -11.24 16 18 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 19 C -0.50 -26.71 9.06 23.46 0.21 -26.50 16 20 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 21 C 0.03 1.72 5.19 85.26 0.44 2.16 16 22 N -0.83 -43.79 10.89 21.83 0.24 -43.55 16 23 Si 0.98 38.08 29.58 68.60 2.03 40.11 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 27 C -0.18 -9.64 8.68 22.73 0.20 -9.44 16 28 C -0.09 -4.45 7.90 22.22 0.18 -4.28 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.39 5.30 9.08 -74.05 -0.67 4.63 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.61 7.80 -2.39 -0.02 1.59 16 37 H 0.03 1.01 6.54 -2.39 -0.02 0.99 16 38 H 0.08 2.20 8.08 -2.38 -0.02 2.18 16 39 H 0.09 2.97 8.02 -2.39 -0.02 2.95 16 40 H 0.06 2.34 5.88 -2.39 -0.01 2.33 16 41 H 0.12 4.21 8.03 -2.91 -0.02 4.19 16 42 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 43 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 44 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 45 H 0.08 3.91 5.68 -2.91 -0.02 3.89 16 Total: -1.00 -67.97 355.24 0.88 -67.09 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.34 Total: 36.50 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.10 Total: -30.38 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -3.58 Total: -64.08 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.00 Total: -49.24 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -67.97 0.88 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444728831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.443 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds